Gvermi7984.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7984.t1
Unique NameGvermi7984.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:484065..484328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1527444.ucyna2_00338
Preferred nameaccB
PFAMsBiotin_lipoyl
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00040,RC00367
KEGG koko:K02160
KEGG ReactionR00742
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
Evalue2.56e-11
EggNOG OGsCOG0511@1|root,COG0511@2|Bacteria,1G6MY@1117|Cyanobacteria
Descriptionfirst, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
COG categoryI
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7984Gvermi7984Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 484065..484328 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7984.t1.start1Gvermi7984.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 484065..484067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7984.t1.CDS1Gvermi7984.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 484065..484328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7984.t1.exon1Gvermi7984.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 484065..484328 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7984.t1.stop1Gvermi7984.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 484326..484328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7984.t1Gvermi7984.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 484065..484328 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7984.t1 ID=Gvermi7984.t1|Name=Gvermi7984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=88bp
LDKHTVYDSDFVVKSERVGFFFSGAKNKPPLVNAGDHVDFNQPVCIIEQL
GQQYVYRSEASGTVLKMFVEDGDAVEYGQHIMVIRPD*
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spliced messenger RNA

>Gvermi7984.t1 ID=Gvermi7984.t1|Name=Gvermi7984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp|location=Sequence derived from alignment at ScGOVlb_24226:484065..484328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACAAGCACACCGTGTACGATTCGGACTTTGTGGTCAAGTCCGAGCG
CGTGGGCTTCTTCTTCTCGGGCGCCAAGAACAAGCCGCCGCTGGTCAACG
CCGGCGACCACGTCGACTTCAACCAGCCCGTGTGCATCATTGAGCAGCTG
GGCCAGCAGTACGTGTACCGGTCGGAGGCGTCCGGCACCGTGCTCAAGAT
GTTTGTGGAGGACGGCGACGCGGTGGAGTACGGCCAGCACATCATGGTCA
TTCGACCCGACTAG
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protein sequence of Gvermi7984.t1

>Gvermi7984.t1 ID=Gvermi7984.t1|Name=Gvermi7984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=88bp
LDKHTVYDSDFVVKSERVGFFFSGAKNKPPLVNAGDHVDFNQPVCIIEQL
GQQYVYRSEASGTVLKMFVEDGDAVEYGQHIMVIRPD*
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mRNA from alignment at ScGOVlb_24226:484065..484328+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7984.t1 ID=Gvermi7984.t1|Name=Gvermi7984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp|location=Sequence derived from alignment at ScGOVlb_24226:484065..484328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGACAAGCACACCGTGTACGATTCGGACTTTGTGGTCAAGTCCGAGCG
CGTGGGCTTCTTCTTCTCGGGCGCCAAGAACAAGCCGCCGCTGGTCAACG
CCGGCGACCACGTCGACTTCAACCAGCCCGTGTGCATCATTGAGCAGCTG
GGCCAGCAGTACGTGTACCGGTCGGAGGCGTCCGGCACCGTGCTCAAGAT
GTTTGTGGAGGACGGCGACGCGGTGGAGTACGGCCAGCACATCATGGTCA
TTCGACCCGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:484065..484328+

>Gvermi7984.t1 ID=Gvermi7984.t1|Name=Gvermi7984.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=264bp|location=Sequence derived from alignment at ScGOVlb_24226:484065..484328+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGACAAGCACACCGTGTACGATTCGGACTTTGTGGTCAAGTCCGAGCG
CGTGGGCTTCTTCTTCTCGGGCGCCAAGAACAAGCCGCCGCTGGTCAACG
CCGGCGACCACGTCGACTTCAACCAGCCCGTGTGCATCATTGAGCAGCTG
GGCCAGCAGTACGTGTACCGGTCGGAGGCGTCCGGCACCGTGCTCAAGAT
GTTTGTGGAGGACGGCGACGCGGTGGAGTACGGCCAGCACATCATGGTCA
TTCGACCCGACTAG
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