Gvermi8084.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8084.t1
Unique NameGvermi8084.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:955771..956364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD07875
Max annot lvl2759|Eukaryota
Evalue8.11e-19
EggNOG OGs2CZ40@1|root,2S8A8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8084Gvermi8084Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 955771..956364 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8084.t1.start1Gvermi8084.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 955771..955773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8084.t1.CDS1Gvermi8084.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 955771..956364 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8084.t1.exon1Gvermi8084.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 955771..956364 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8084.t1.stop1Gvermi8084.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 956362..956364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8084.t1Gvermi8084.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 955771..956364 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8084.t1 ID=Gvermi8084.t1|Name=Gvermi8084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=198bp
MPPAFAAPIPLPPTRAFTALALSPLRPPRVHRVRPSCMSLTHDLLFKTLE
VAAASLLTGSVAAKHASAPTASEPAALTTLLRNFISHSERVAAAVDSGTP
SARRWQKLAICLAIDLAGAGSLSFPFVGDLLDLAYAPLCALMVHALFANP
LFSAVAFAEEILPGTDAFPTATIAWAVENYEFLSSLRSPPSPPPSQS*
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spliced messenger RNA

>Gvermi8084.t1 ID=Gvermi8084.t1|Name=Gvermi8084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp|location=Sequence derived from alignment at ScGOVlb_24226:955771..956364+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCCGCCTTCGCCGCTCCCATCCCGCTGCCGCCCACCCGGGCTTT
TACTGCCCTGGCTTTGTCCCCGCTCCGTCCTCCACGCGTGCATCGCGTGC
GTCCGTCATGCATGAGTCTGACGCACGACCTTCTGTTCAAGACTCTTGAA
GTCGCCGCCGCATCCCTTCTCACCGGCTCCGTTGCCGCCAAGCACGCCTC
CGCCCCTACCGCGTCGGAACCCGCCGCGCTTACCACGTTGCTGCGCAATT
TCATCTCCCACTCCGAGCGCGTCGCCGCCGCCGTTGACTCGGGCACCCCA
TCTGCCAGGCGCTGGCAGAAGCTTGCCATCTGTCTCGCCATCGATCTTGC
CGGTGCTGGCAGTCTTTCGTTCCCGTTTGTGGGCGATCTTCTGGATCTTG
CCTACGCCCCGCTCTGTGCGCTCATGGTTCACGCATTGTTTGCAAACCCG
CTTTTCTCGGCTGTGGCGTTTGCCGAAGAGATTTTGCCCGGCACTGACGC
CTTTCCGACTGCTACCATTGCTTGGGCGGTGGAAAACTATGAGTTCCTGT
CGTCATTGAGGTCGCCTCCCTCTCCCCCGCCCTCTCAGTCATGA
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protein sequence of Gvermi8084.t1

>Gvermi8084.t1 ID=Gvermi8084.t1|Name=Gvermi8084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=198bp
MPPAFAAPIPLPPTRAFTALALSPLRPPRVHRVRPSCMSLTHDLLFKTLE
VAAASLLTGSVAAKHASAPTASEPAALTTLLRNFISHSERVAAAVDSGTP
SARRWQKLAICLAIDLAGAGSLSFPFVGDLLDLAYAPLCALMVHALFANP
LFSAVAFAEEILPGTDAFPTATIAWAVENYEFLSSLRSPPSPPPSQS*
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mRNA from alignment at ScGOVlb_24226:955771..956364+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8084.t1 ID=Gvermi8084.t1|Name=Gvermi8084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp|location=Sequence derived from alignment at ScGOVlb_24226:955771..956364+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCGCCTTCGCCGCTCCCATCCCGCTGCCGCCCACCCGGGCTTT
TACTGCCCTGGCTTTGTCCCCGCTCCGTCCTCCACGCGTGCATCGCGTGC
GTCCGTCATGCATGAGTCTGACGCACGACCTTCTGTTCAAGACTCTTGAA
GTCGCCGCCGCATCCCTTCTCACCGGCTCCGTTGCCGCCAAGCACGCCTC
CGCCCCTACCGCGTCGGAACCCGCCGCGCTTACCACGTTGCTGCGCAATT
TCATCTCCCACTCCGAGCGCGTCGCCGCCGCCGTTGACTCGGGCACCCCA
TCTGCCAGGCGCTGGCAGAAGCTTGCCATCTGTCTCGCCATCGATCTTGC
CGGTGCTGGCAGTCTTTCGTTCCCGTTTGTGGGCGATCTTCTGGATCTTG
CCTACGCCCCGCTCTGTGCGCTCATGGTTCACGCATTGTTTGCAAACCCG
CTTTTCTCGGCTGTGGCGTTTGCCGAAGAGATTTTGCCCGGCACTGACGC
CTTTCCGACTGCTACCATTGCTTGGGCGGTGGAAAACTATGAGTTCCTGT
CGTCATTGAGGTCGCCTCCCTCTCCCCCGCCCTCTCAGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:955771..956364+

>Gvermi8084.t1 ID=Gvermi8084.t1|Name=Gvermi8084.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=594bp|location=Sequence derived from alignment at ScGOVlb_24226:955771..956364+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCCCGCCTTCGCCGCTCCCATCCCGCTGCCGCCCACCCGGGCTTT
TACTGCCCTGGCTTTGTCCCCGCTCCGTCCTCCACGCGTGCATCGCGTGC
GTCCGTCATGCATGAGTCTGACGCACGACCTTCTGTTCAAGACTCTTGAA
GTCGCCGCCGCATCCCTTCTCACCGGCTCCGTTGCCGCCAAGCACGCCTC
CGCCCCTACCGCGTCGGAACCCGCCGCGCTTACCACGTTGCTGCGCAATT
TCATCTCCCACTCCGAGCGCGTCGCCGCCGCCGTTGACTCGGGCACCCCA
TCTGCCAGGCGCTGGCAGAAGCTTGCCATCTGTCTCGCCATCGATCTTGC
CGGTGCTGGCAGTCTTTCGTTCCCGTTTGTGGGCGATCTTCTGGATCTTG
CCTACGCCCCGCTCTGTGCGCTCATGGTTCACGCATTGTTTGCAAACCCG
CTTTTCTCGGCTGTGGCGTTTGCCGAAGAGATTTTGCCCGGCACTGACGC
CTTTCCGACTGCTACCATTGCTTGGGCGGTGGAAAACTATGAGTTCCTGT
CGTCATTGAGGTCGCCTCCCTCTCCCCCGCCCTCTCAGTCATGA
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