Gvermi12635.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12635.t1
Unique NameGvermi12635.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length66
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_11969contigScGOVlb_11969:2..288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12635Gvermi12635Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_11969 2..288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12635.t1.CDS1Gvermi12635.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_11969 2..35 +
Gvermi12635.t1.CDS2Gvermi12635.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_11969 127..288 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12635.t1.exon1Gvermi12635.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_11969 2..35 +
Gvermi12635.t1.exon2Gvermi12635.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_11969 127..288 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12635.t1.intron1Gvermi12635.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_11969 36..126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12635.t1Gvermi12635.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_11969 2..288 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12635.t1 ID=Gvermi12635.t1|Name=Gvermi12635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=66bp
XAWFTKEENALWTAHMKMCINLGRGHTSYGLKKALVLDLMQICQKIAEQP
KQLSPNRVLLSASLAX
back to top

spliced messenger RNA

>Gvermi12635.t1 ID=Gvermi12635.t1|Name=Gvermi12635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=196bp|location=Sequence derived from alignment at ScGOVlb_11969:2..288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CCGCATGGTTCACTAAAGAGGAGAATGCATTATGGACTGCGCACATGAAA
ATGTGCATCAATCTCGGTCGAGGGCATACTTCGTACGGACTGAAGAAAGC
ATTGGTGCTGGATCTGATGCAAATTTGTCAGAAGATTGCTGAACAGCCAA
AGCAACTATCGCCCAACCGAGTTTTGTTGTCGGCCAGTCTTGCTTG
back to top

protein sequence of Gvermi12635.t1

>Gvermi12635.t1 ID=Gvermi12635.t1|Name=Gvermi12635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=66bp
XAWFTKEENALWTAHMKMCINLGRGHTSYGLKKALVLDLMQICQKIAEQP
KQLSPNRVLLSASLAX
back to top

mRNA from alignment at ScGOVlb_11969:2..288+

Legend: CDSpolypeptideexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12635.t1 ID=Gvermi12635.t1|Name=Gvermi12635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp|location=Sequence derived from alignment at ScGOVlb_11969:2..288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CCGCATGGTTCACTAAAGAGGAGAATGCATTATGGTACGTTCTAGATAGC
TTCTCGCGAGCGACTGCGTTTCCCGTGTCGCTGTGATTGACTCACTATAT
GTCGCTTGATTCTTTGCTTTGGAAGGACTGCGCACATGAAAATGTGCATC
AATCTCGGTCGAGGGCATACTTCGTACGGACTGAAGAAAGCATTGGTGCT
GGATCTGATGCAAATTTGTCAGAAGATTGCTGAACAGCCAAAGCAACTAT
CGCCCAACCGAGTTTTGTTGTCGGCCAGTCTTGCTTG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_11969:2..288+

>Gvermi12635.t1 ID=Gvermi12635.t1|Name=Gvermi12635.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=196bp|location=Sequence derived from alignment at ScGOVlb_11969:2..288+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CCGCATGGTTCACTAAAGAGGAGAATGCATTATGGACTGCGCACATGAAA
ATGTGCATCAATCTCGGTCGAGGGCATACTTCGTACGGACTGAAGAAAGC
ATTGGTGCTGGATCTGATGCAAATTTGTCAGAAGATTGCTGAACAGCCAA
AGCAACTATCGCCCAACCGAGTTTTGTTGTCGGCCAGTCTTGCTTG
back to top