Gvermi7985.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7985.t1
Unique NameGvermi7985.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length172
Homology
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A2V3IQ31_9FLOR (Tic20 family protein Ycf60 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ31_9FLOR)

HSP 1 Score: 238 bits (606), Expect = 8.770e-78
Identity = 121/171 (70.76%), Postives = 141/171 (82.46%), Query Frame = 0
Query:    1 MGWSGXXXXXXXXXXVPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGPY 171
            M WSG          +PP DR LS LPYLIPLLDSLTFG +VF++VP L+ +LL+PLLPLYN+YRG+P LAFGVFL LFVLVVRN+NVSRF+RFNTYQALILDIALI PQLFQ   L  A+P  V E+C+TAVFYA++MAVSYA VMN +GKLPDEIPA+S+SVKQQLGP+
Sbjct:    1 MRWSGNRGNGSS---IPPQDRILSILPYLIPLLDSLTFGKYVFQKVPLLSQILLVPLLPLYNIYRGIPFLAFGVFLLLFVLVVRNINVSRFIRFNTYQALILDIALIFPQLFQGVNLSAAIPASVTEICTTAVFYAIMMAVSYAAVMNAQGKLPDEIPALSDSVKQQLGPF 168          
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A5J4YN77_PORPP (Tic20 family protein Ycf60 n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN77_PORPP)

HSP 1 Score: 165 bits (417), Expect = 4.220e-48
Identity = 86/154 (55.84%), Postives = 112/154 (72.73%), Query Frame = 0
Query:   18 PADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGPY 171
            P DR L +LPYL+PLLDSL +G +VF +VP  + V+L PL+PL  VYRG P LAFG+FLALF+LVVRN NV RF+RFNT QA++LDI  I+P LF    LG+  P  +VE  +  VFY +V  V YA + N++G+ PD+IP +S SV QQ+GP+
Sbjct:   91 PIDRVLGTLPYLVPLLDSLVYGKYVFEKVPY-STVVLGPLVPLLEVYRGTPFLAFGIFLALFILVVRNQNVPRFIRFNTQQAILLDILTIIPNLFNG--LGSRAPAVIVEGVNNTVFYGLVACVIYATISNLQGEYPDKIPGISASVSQQIGPF 241          
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A1X6NJR3_PORUM (Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJR3_PORUM)

HSP 1 Score: 162 bits (409), Expect = 4.270e-48
Identity = 83/148 (56.08%), Postives = 108/148 (72.97%), Query Frame = 0
Query:   24 SSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGPY 171
            +S PYL+PLLD L FG FVF R PALA +++  + PL+ +YRG P  AFG+F AL+VL+VRN   SRFVRFNT QAL++D+ LILPQL   A     VP  ++E  S+ +FYAVV +V YAVV N+RG+ PD+IP VS +V+ Q+GPY
Sbjct:    2 ASAPYLLPLLDGLVFGRFVFERAPALAALVVPAVAPLFRLYRGTPFFAFGIFFALYVLIVRNTGFSRFVRFNTQQALLIDVVLILPQLLGGAVAAAGVPGWILEAGSSTIFYAVVASVVYAVVSNLRGETPDQIPGVSEAVEAQIGPY 149          
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A7S2ZG79_9RHOD (Tic20 family protein Ycf60 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZG79_9RHOD)

HSP 1 Score: 147 bits (371), Expect = 1.320e-41
Identity = 72/152 (47.37%), Postives = 105/152 (69.08%), Query Frame = 0
Query:   20 DRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGPY 171
            DR  S LPY +PLLDSL +GS++F++ P    ++L PL P Y +YRG+P L   +F  +F LVVRN N++RF+R+N  QA++LD+ LI+P LF  A     +P  + E  +  VFY+++ AV YAV+ N+RG+LP++IP VS SV  Q+GP+
Sbjct:   56 DRFFSILPYFLPLLDSLQYGSYLFQKFPVFKELVLYPLAPFYAIYRGIPFLDLAIFFGVFFLVVRNTNINRFIRYNAQQAIMLDLILIIPALFGGA--AAQMPRFIAETGANTVFYSILAAVGYAVIENIRGELPNKIPLVSESVDSQIGPF 205          
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A7J7IDD5_9RHOD (Tic20 family protein Ycf60 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IDD5_9RHOD)

HSP 1 Score: 138 bits (347), Expect = 1.850e-37
Identity = 81/157 (51.59%), Postives = 101/157 (64.33%), Query Frame = 0
Query:   16 VPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLP--VVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGP 170
            VP ADR  S LPYL+PLLDSL +G +VF R+P  + V+L PL PL  +YRG+P L   +F+ L VLVVRN   S FVRFNT QAL LDI LILPQLFQ   LGTA+P+    ++    AVFY ++  + Y V    RG +PD IP +S +   Q  P
Sbjct:   94 VPWADRIFSILPYLVPLLDSLVYGRYVFERLPIFSLVVLRPLWPLLGIYRGIPFLPLVIFVLLLVLVVRNPRASFFVRFNTMQALTLDIVLILPQLFQG--LGTALPISSAAIQGLEAAVFYGILGCILYVVQSCGRGLVPDRIPLISEAAYAQTTP 248          
BLAST of Gvermi7985.t1 vs. uniprot
Match: L1J8M5_GUITC (Uncharacterized protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J8M5_GUITC)

HSP 1 Score: 136 bits (342), Expect = 3.380e-37
Identity = 66/149 (44.30%), Postives = 100/149 (67.11%), Query Frame = 0
Query:   21 RALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLG 169
            R +S LPY++P++DSL++G F+F+++P LA + + PL P   + +  P+++F  FL LF+ VVRN  V RF+RFNT QAL+L+I LI PQ+  S  +G  +P    E  S   FYA+   V Y+ + N+RG+LP +IP +S +V QQ+G
Sbjct:   53 RVVSCLPYILPMMDSLSYGRFLFQKIPLLAFIFMKPLQPFVELAQAFPMISFVAFLGLFLFVVRNRKVPRFIRFNTMQALLLEILLIFPQILTSGNMGGLIPFVFTEFVSNMTFYAIAAIVGYSCISNLRGELPCKIPVISTAVFQQIG 201          
BLAST of Gvermi7985.t1 vs. uniprot
Match: A0A7S1GTJ9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1GTJ9_HEMAN)

HSP 1 Score: 133 bits (335), Expect = 9.490e-36
Identity = 66/149 (44.30%), Postives = 100/149 (67.11%), Query Frame = 0
Query:   21 RALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLG 169
            R  S +PY++P++DSL +G F+F++VP ++ + + PL P   + +  P+L+F  FL LF+ VVRN  + RFVRFNT QAL+L+I LI PQ+  S+ +G  +P    E  S   FY+VV  V Y+ + N+RG+LP +IP +S +V QQ+G
Sbjct:   87 RIGSCMPYILPMMDSLAYGRFIFQKVPLISMIFMTPLQPFVELAQAFPMLSFVAFLGLFLFVVRNKKIPRFVRFNTMQALLLEIILIFPQILTSSNMGGLIPFMFTEFISNMTFYSVVAIVVYSCLCNLRGELPCKIPVISTAVFQQIG 235          
BLAST of Gvermi7985.t1 vs. uniprot
Match: M1UWP3_CYAM1 (Tic20 family protein Ycf60 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1UWP3_CYAM1)

HSP 1 Score: 132 bits (332), Expect = 2.210e-34
Identity = 71/152 (46.71%), Postives = 97/152 (63.82%), Query Frame = 0
Query:   16 VPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQ 167
            +P ++R L  LPYL+PLLDSL +G +VF R P  +  +L PL PL ++YRG+P L   +F+ + VLVVRN  VS FVRFNT QAL LDIALILPQLFQ       V    +++   +VFY ++  + Y +    RG++PD IP +S +   Q
Sbjct:  177 IPWSERLLGILPYLVPLLDSLVYGKYVFERFPIFSMFVLQPLWPLLSIYRGIPFLPLIIFVLMLVLVVRNPRVSYFVRFNTMQALTLDIALILPQLFQGLSNALPVSAVAIQVLQASVFYGMLGCILYVIQSCGRGQVPDRIPLISEAAHTQ 328          
BLAST of Gvermi7985.t1 vs. uniprot
Match: L1ILE1_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ILE1_GUITC)

HSP 1 Score: 127 bits (318), Expect = 3.390e-34
Identity = 74/155 (47.74%), Postives = 100/155 (64.52%), Query Frame = 0
Query:   16 VPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYR--GVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQL 168
            VP  DR ++ LPY +PL DS  +G F+F + P LA    LP +PL+ V      P ++F VF+ALF  V RN ++ RFVR+NT QA+ LDIALI P LF+   L   VPL + E  S  VFYA++++V YA V N+ GKLP+EIP +S +V  Q+
Sbjct:    8 VPALDRFVACLPYALPLADSFEWGHFLFDKFPILA----LPFVPLFPVISLLNAPFVSFAVFIALFSFVTRNPSIPRFVRYNTLQAIYLDIALIFPSLFKG--LAGNVPLELAETGSNTVFYAILLSVIYAAVSNISGKLPNEIPLISETVDGQM 156          
BLAST of Gvermi7985.t1 vs. uniprot
Match: M2Y1M3_GALSU (Tic20 family protein Ycf60 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1M3_GALSU)

HSP 1 Score: 129 bits (324), Expect = 3.530e-34
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 0
Query:   18 PADRALSSLPYLIPLLDSLTFGSFVFRRVPALANVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQALILDIALILPQLFQSARLGT-AVPLPVVELCSTAVFYAVVMAVSYAVVMNVRGKLPDEIPAVSNSVKQQLGPY 171
            P +R L+ LPYL+PLLD + +G FVF + P ++  +  PL PL  VYRG+P LAF +F  LF  +VRN  V  F+RFNT QA+++D+ LI+PQ+F  A   + A+P  VVE   + VF A+V+   Y ++   RG  PD++P +S + + QL  +
Sbjct:   80 PKNRLLAFLPYLMPLLDGVVYGRFVFAKYPVISAFIFYPLQPLLIVYRGIPFLAFVLFAMLFYFIVRNETVDNFIRFNTMQAILIDLVLIIPQMFLHATSASGAIPPGVVESLCSLVFCAIVVITMYVIICVARGNKPDQVPLISEASRAQLNRF 234          
The following BLAST results are available for this feature:
BLAST of Gvermi7985.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ31_9FLOR8.770e-7870.76Tic20 family protein Ycf60 n=1 Tax=Gracilariopsis ... [more]
A0A5J4YN77_PORPP4.220e-4855.84Tic20 family protein Ycf60 n=2 Tax=Porphyridium pu... [more]
A0A1X6NJR3_PORUM4.270e-4856.08Tic20 family protein Ycf60 (Fragment) n=1 Tax=Porp... [more]
A0A7S2ZG79_9RHOD1.320e-4147.37Tic20 family protein Ycf60 n=2 Tax=Rhodosorus mari... [more]
A0A7J7IDD5_9RHOD1.850e-3751.59Tic20 family protein Ycf60 n=1 Tax=Cyanidiococcus ... [more]
L1J8M5_GUITC3.380e-3744.30Uncharacterized protein n=2 Tax=Geminigeraceae Tax... [more]
A0A7S1GTJ9_HEMAN9.490e-3644.30Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
M1UWP3_CYAM12.210e-3446.71Tic20 family protein Ycf60 n=1 Tax=Cyanidioschyzon... [more]
L1ILE1_GUITC3.390e-3447.74Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
M2Y1M3_GALSU3.530e-3443.23Tic20 family protein Ycf60 n=1 Tax=Galdieria sulph... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 21..163
e-value: 6.4E-18
score: 65.2
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 16..168
NoneNo IPR availablePANTHERPTHR33510:SF5PROTEIN TIC 20-II, CHLOROPLASTICcoord: 16..168
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 113..131
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 150..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..82
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 132..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 26..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 83..93
NoneNo IPR availableTMHMMTMhelixcoord: 123..145
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 62..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:484419..484934 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7985.t1Gvermi7985.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 484419..484934 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7985.t1 ID=Gvermi7985.t1|Name=Gvermi7985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=172bp
MGWSGGGGGGGGGGGVPPADRALSSLPYLIPLLDSLTFGSFVFRRVPALA
NVLLLPLLPLYNVYRGVPLLAFGVFLALFVLVVRNVNVSRFVRFNTYQAL
ILDIALILPQLFQSARLGTAVPLPVVELCSTAVFYAVVMAVSYAVVMNVR
GKLPDEIPAVSNSVKQQLGPY*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005691Tic20