Gvermi8074.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8074.t1
Unique NameGvermi8074.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:933413..934734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708404.1
Preferred nameBIO2
PFAMsBATS,Radical_SAM
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00041,RC00441
KEGG koko:K01012,ko:K15400
KEGG ReactionR01078,R09106
KEGG Pathwayko00073,ko00780,ko01100,map00073,map00780,map01100
KEGG ModuleM00123,M00573,M00577
GOsGO:0003674,GO:0003824,GO:0004076,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009987,GO:0016053,GO:0016740,GO:0016782,GO:0016783,GO:0017144,GO:0018130,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0051186,GO:0051188,GO:0070283,GO:0071704,GO:0072330,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue7.11e-165
EggNOG OGsCOG0502@1|root,KOG2900@2759|Eukaryota
EC2.3.1.188,2.8.1.6
Descriptionbiotin synthase activity
COG categoryH
BiGG ReactioniMM904.YGR286C,iND750.YGR286C
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8074Gvermi8074Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 933413..934734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1Gvermi8074.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 933413..934734 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1.start1Gvermi8074.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 933413..933415 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1.CDS1Gvermi8074.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 933413..934588 +
Gvermi8074.t1.CDS2Gvermi8074.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 934723..934734 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1.exon1Gvermi8074.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 933413..934588 +
Gvermi8074.t1.exon2Gvermi8074.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 934723..934734 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1.intron1Gvermi8074.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 934589..934722 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8074.t1.stop1Gvermi8074.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 934732..934734 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8074.t1 ID=Gvermi8074.t1|Name=Gvermi8074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MSLRQVIRSPLSNIFRRWVSGGKVPSAQVSQTVAASGSMPLPSISSSYNS
VSQCERCDSRYPVRHDWSREEIRHIYHTPLLELIYHGATAHRIYFDPREV
QRCTLLSIKTGGCPEDCKYCSQSSRYETSVKAEKLMELDDVVEKARQAKE
AGSTRFCMGAAWRGVSQVGPRQFGRVLNMVKEIRGMGMEVCATLGLLNKE
QAVALKEAGLTAYNHNLDTSKEFYSQVITSRVYEDRLQTLENVREAGISV
CCGGIIGLGEKHEDRISLLHTLSTLTEHPESVPVNALVANAGTPLEKAKP
VGVWDLCRMIATARVVMPRSMVRLSAGRVSLSEVEQALCFMAGANSIFTG
EKLLTTPNPELDRDANMMETLGLVGKRPFFYEQPYEKRSERHSGS*
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spliced messenger RNA

>Gvermi8074.t1 ID=Gvermi8074.t1|Name=Gvermi8074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:933413..934734+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTCAGACAGGTAATAAGGTCCCCTTTATCTAACATATTTCGACG
CTGGGTATCCGGCGGAAAAGTACCATCAGCACAGGTGTCGCAGACAGTTG
CGGCTTCAGGTTCCATGCCCTTACCAAGCATCAGCTCTTCATACAACTCA
GTGTCACAATGTGAAAGATGTGATTCAAGGTACCCCGTTCGCCATGATTG
GTCTCGAGAAGAAATAAGACACATTTACCATACACCATTGCTTGAGTTAA
TCTACCACGGCGCAACAGCTCATCGCATCTACTTTGATCCACGGGAGGTA
CAGAGATGTACGTTATTATCGATAAAGACGGGGGGATGTCCGGAAGACTG
CAAATACTGTTCCCAAAGCTCGAGATACGAGACGAGTGTAAAGGCGGAGA
AGCTCATGGAGTTGGATGATGTGGTAGAGAAAGCCAGGCAAGCCAAAGAG
GCCGGCTCTACAAGGTTTTGTATGGGAGCAGCGTGGAGAGGTGTGTCTCA
AGTCGGGCCTAGGCAGTTTGGACGTGTGCTGAACATGGTGAAAGAAATCC
GAGGAATGGGTATGGAGGTTTGCGCAACGTTGGGTCTTTTGAACAAGGAA
CAAGCAGTAGCGCTAAAAGAAGCCGGTCTAACTGCATACAATCATAATTT
AGACACATCGAAGGAATTCTACTCCCAAGTGATTACTTCGAGGGTGTACG
AAGATCGTCTCCAAACTTTGGAGAATGTGCGTGAAGCGGGAATATCTGTT
TGCTGCGGAGGTATCATCGGTCTGGGCGAGAAGCATGAAGATCGAATTTC
TCTGCTGCATACGCTGTCGACATTGACAGAACACCCCGAAAGCGTGCCTG
TGAATGCGTTGGTGGCGAATGCTGGAACTCCTCTGGAAAAAGCCAAGCCA
GTAGGGGTGTGGGACCTGTGCCGAATGATTGCGACTGCACGTGTTGTGAT
GCCGCGCTCCATGGTGCGACTCAGTGCTGGAAGGGTGTCGCTTTCCGAAG
TAGAGCAAGCACTTTGCTTCATGGCTGGCGCAAATTCCATATTCACCGGG
GAGAAGCTTTTGACCACGCCAAATCCGGAGCTTGACAGGGACGCCAACAT
GATGGAGACGTTAGGTCTGGTTGGAAAGCGTCCTTTTTTCTATGAGCAGC
CGTACGAAAAAAGAAGCGAGCGCCATAGCGGGAGCTAG
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protein sequence of Gvermi8074.t1

>Gvermi8074.t1 ID=Gvermi8074.t1|Name=Gvermi8074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MSLRQVIRSPLSNIFRRWVSGGKVPSAQVSQTVAASGSMPLPSISSSYNS
VSQCERCDSRYPVRHDWSREEIRHIYHTPLLELIYHGATAHRIYFDPREV
QRCTLLSIKTGGCPEDCKYCSQSSRYETSVKAEKLMELDDVVEKARQAKE
AGSTRFCMGAAWRGVSQVGPRQFGRVLNMVKEIRGMGMEVCATLGLLNKE
QAVALKEAGLTAYNHNLDTSKEFYSQVITSRVYEDRLQTLENVREAGISV
CCGGIIGLGEKHEDRISLLHTLSTLTEHPESVPVNALVANAGTPLEKAKP
VGVWDLCRMIATARVVMPRSMVRLSAGRVSLSEVEQALCFMAGANSIFTG
EKLLTTPNPELDRDANMMETLGLVGKRPFFYEQPYEKRSERHSGS*
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mRNA from alignment at ScGOVlb_24226:933413..934734+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8074.t1 ID=Gvermi8074.t1|Name=Gvermi8074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1322bp|location=Sequence derived from alignment at ScGOVlb_24226:933413..934734+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTCAGACAGGTAATAAGGTCCCCTTTATCTAACATATTTCGACG
CTGGGTATCCGGCGGAAAAGTACCATCAGCACAGGTGTCGCAGACAGTTG
CGGCTTCAGGTTCCATGCCCTTACCAAGCATCAGCTCTTCATACAACTCA
GTGTCACAATGTGAAAGATGTGATTCAAGGTACCCCGTTCGCCATGATTG
GTCTCGAGAAGAAATAAGACACATTTACCATACACCATTGCTTGAGTTAA
TCTACCACGGCGCAACAGCTCATCGCATCTACTTTGATCCACGGGAGGTA
CAGAGATGTACGTTATTATCGATAAAGACGGGGGGATGTCCGGAAGACTG
CAAATACTGTTCCCAAAGCTCGAGATACGAGACGAGTGTAAAGGCGGAGA
AGCTCATGGAGTTGGATGATGTGGTAGAGAAAGCCAGGCAAGCCAAAGAG
GCCGGCTCTACAAGGTTTTGTATGGGAGCAGCGTGGAGAGGTGTGTCTCA
AGTCGGGCCTAGGCAGTTTGGACGTGTGCTGAACATGGTGAAAGAAATCC
GAGGAATGGGTATGGAGGTTTGCGCAACGTTGGGTCTTTTGAACAAGGAA
CAAGCAGTAGCGCTAAAAGAAGCCGGTCTAACTGCATACAATCATAATTT
AGACACATCGAAGGAATTCTACTCCCAAGTGATTACTTCGAGGGTGTACG
AAGATCGTCTCCAAACTTTGGAGAATGTGCGTGAAGCGGGAATATCTGTT
TGCTGCGGAGGTATCATCGGTCTGGGCGAGAAGCATGAAGATCGAATTTC
TCTGCTGCATACGCTGTCGACATTGACAGAACACCCCGAAAGCGTGCCTG
TGAATGCGTTGGTGGCGAATGCTGGAACTCCTCTGGAAAAAGCCAAGCCA
GTAGGGGTGTGGGACCTGTGCCGAATGATTGCGACTGCACGTGTTGTGAT
GCCGCGCTCCATGGTGCGACTCAGTGCTGGAAGGGTGTCGCTTTCCGAAG
TAGAGCAAGCACTTTGCTTCATGGCTGGCGCAAATTCCATATTCACCGGG
GAGAAGCTTTTGACCACGCCAAATCCGGAGCTTGACAGGGACGCCAACAT
GATGGAGACGTTAGGTCTGGTTGGAAAGCGTCCTTTTTTCTATGAGCAGC
CGTACGAAAAAAGAAGCGAGCGCCATGTTGTGCCACAAACAGCATGATTT
CGTTTAGTACGACATGGGGCTTTGACAAGTTAGAAATAGTTGTTGACCTC
TCTGGACCATGTGACCAAGTATTTTGGATGTTTTCGTTGATGCTTGAAAC
GCTGAACAAGAGCGGGAGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:933413..934734+

>Gvermi8074.t1 ID=Gvermi8074.t1|Name=Gvermi8074.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_24226:933413..934734+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCTCAGACAGGTAATAAGGTCCCCTTTATCTAACATATTTCGACG
CTGGGTATCCGGCGGAAAAGTACCATCAGCACAGGTGTCGCAGACAGTTG
CGGCTTCAGGTTCCATGCCCTTACCAAGCATCAGCTCTTCATACAACTCA
GTGTCACAATGTGAAAGATGTGATTCAAGGTACCCCGTTCGCCATGATTG
GTCTCGAGAAGAAATAAGACACATTTACCATACACCATTGCTTGAGTTAA
TCTACCACGGCGCAACAGCTCATCGCATCTACTTTGATCCACGGGAGGTA
CAGAGATGTACGTTATTATCGATAAAGACGGGGGGATGTCCGGAAGACTG
CAAATACTGTTCCCAAAGCTCGAGATACGAGACGAGTGTAAAGGCGGAGA
AGCTCATGGAGTTGGATGATGTGGTAGAGAAAGCCAGGCAAGCCAAAGAG
GCCGGCTCTACAAGGTTTTGTATGGGAGCAGCGTGGAGAGGTGTGTCTCA
AGTCGGGCCTAGGCAGTTTGGACGTGTGCTGAACATGGTGAAAGAAATCC
GAGGAATGGGTATGGAGGTTTGCGCAACGTTGGGTCTTTTGAACAAGGAA
CAAGCAGTAGCGCTAAAAGAAGCCGGTCTAACTGCATACAATCATAATTT
AGACACATCGAAGGAATTCTACTCCCAAGTGATTACTTCGAGGGTGTACG
AAGATCGTCTCCAAACTTTGGAGAATGTGCGTGAAGCGGGAATATCTGTT
TGCTGCGGAGGTATCATCGGTCTGGGCGAGAAGCATGAAGATCGAATTTC
TCTGCTGCATACGCTGTCGACATTGACAGAACACCCCGAAAGCGTGCCTG
TGAATGCGTTGGTGGCGAATGCTGGAACTCCTCTGGAAAAAGCCAAGCCA
GTAGGGGTGTGGGACCTGTGCCGAATGATTGCGACTGCACGTGTTGTGAT
GCCGCGCTCCATGGTGCGACTCAGTGCTGGAAGGGTGTCGCTTTCCGAAG
TAGAGCAAGCACTTTGCTTCATGGCTGGCGCAAATTCCATATTCACCGGG
GAGAAGCTTTTGACCACGCCAAATCCGGAGCTTGACAGGGACGCCAACAT
GATGGAGACGTTAGGTCTGGTTGGAAAGCGTCCTTTTTTCTATGAGCAGC
CGTACGAAAAAAGAAGCGAGCGCCATAGCGGGAGCTAG
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