Gvermi7996.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7996.t2
Unique NameGvermi7996.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:589558..590154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G0Y5
PFAMsCreatinase_N,Creatinase_N_2,Peptidase_M24,Peptidase_M24_C,Pro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K01262,ko:K03768
Evalue4.89e-29
EggNOG OGsCOG0652@1|root,KOG0880@2759|Eukaryota
EC3.4.11.9,5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko01002,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7996Gvermi7996Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 589558..590154 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t2.stop1Gvermi7996.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 589558..589560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t2.CDS1Gvermi7996.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 589558..590154 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t2.exon1Gvermi7996.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 589558..590154 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t2.start1Gvermi7996.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 590152..590154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t2Gvermi7996.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 589558..590154 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7996.t2 ID=Gvermi7996.t2|Name=Gvermi7996.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=199bp
LSTAPLHRAAAARAQPQQAPIDAQADEPPFTHQVFLDFELSDARPARVQI
ALYGTVVPQTVHNFLSLVDSHQYDGTSVYRIVPGLTVQLGDVLRNKGKSG
RASTSSGSLPAENFNISHSAPGIVSMVVKDGMVDSRFFITTRPGDSRYLD
GKYVAFARVVDGMDVLYRMEKLYARPGAIIQKPLSVRILRCARVEPQQ*
back to top

spliced messenger RNA

>Gvermi7996.t2 ID=Gvermi7996.t2|Name=Gvermi7996.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..590154- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCAACCGCGCCGCTTCACCGCGCCGCTGCCGCGCGGGCCCAGCCGCA
ACAAGCACCCATCGATGCCCAAGCCGACGAGCCGCCGTTCACGCACCAAG
TCTTCCTCGACTTTGAGCTCTCCGACGCGCGCCCCGCGCGCGTCCAAATC
GCGCTGTATGGCACCGTCGTGCCGCAAACCGTGCACAACTTCCTCAGCCT
CGTCGACAGCCACCAATACGACGGCACCAGCGTGTACCGAATCGTGCCCG
GCCTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGG
CGCGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATC
GCACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGG
ACAGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGAC
GGCAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTA
CCGCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGC
TTTCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
back to top

protein sequence of Gvermi7996.t2

>Gvermi7996.t2 ID=Gvermi7996.t2|Name=Gvermi7996.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=199bp
LSTAPLHRAAAARAQPQQAPIDAQADEPPFTHQVFLDFELSDARPARVQI
ALYGTVVPQTVHNFLSLVDSHQYDGTSVYRIVPGLTVQLGDVLRNKGKSG
RASTSSGSLPAENFNISHSAPGIVSMVVKDGMVDSRFFITTRPGDSRYLD
GKYVAFARVVDGMDVLYRMEKLYARPGAIIQKPLSVRILRCARVEPQQ*
back to top

mRNA from alignment at ScGOVlb_24226:589558..590154-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7996.t2 ID=Gvermi7996.t2|Name=Gvermi7996.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=597bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..590154- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCAACCGCGCCGCTTCACCGCGCCGCTGCCGCGCGGGCCCAGCCGCA
ACAAGCACCCATCGATGCCCAAGCCGACGAGCCGCCGTTCACGCACCAAG
TCTTCCTCGACTTTGAGCTCTCCGACGCGCGCCCCGCGCGCGTCCAAATC
GCGCTGTATGGCACCGTCGTGCCGCAAACCGTGCACAACTTCCTCAGCCT
CGTCGACAGCCACCAATACGACGGCACCAGCGTGTACCGAATCGTGCCCG
GCCTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGG
CGCGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATC
GCACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGG
ACAGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGAC
GGCAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTA
CCGCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGC
TTTCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:589558..590154-

>Gvermi7996.t2 ID=Gvermi7996.t2|Name=Gvermi7996.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=597bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..590154- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCAACCGCGCCGCTTCACCGCGCCGCTGCCGCGCGGGCCCAGCCGCA
ACAAGCACCCATCGATGCCCAAGCCGACGAGCCGCCGTTCACGCACCAAG
TCTTCCTCGACTTTGAGCTCTCCGACGCGCGCCCCGCGCGCGTCCAAATC
GCGCTGTATGGCACCGTCGTGCCGCAAACCGTGCACAACTTCCTCAGCCT
CGTCGACAGCCACCAATACGACGGCACCAGCGTGTACCGAATCGTGCCCG
GCCTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGG
CGCGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATC
GCACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGG
ACAGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGAC
GGCAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTA
CCGCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGC
TTTCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
back to top