Gvermi7996.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7996.t1
Unique NameGvermi7996.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:589558..589902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002674871.1
Preferred nameCWC27
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
KEGG koko:K12737
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031974,GO:0031981,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0071012,GO:0071013,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990904
Evalue3.66e-14
EggNOG OGsCOG0652@1|root,KOG0865@2759|Eukaryota
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7996Gvermi7996Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 589558..590154 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t1.stop1Gvermi7996.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 589558..589560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t1.CDS1Gvermi7996.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 589558..589902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t1.exon1Gvermi7996.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 589558..589902 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t1.start1Gvermi7996.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 589900..589902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7996.t1Gvermi7996.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 589558..589902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7996.t1 ID=Gvermi7996.t1|Name=Gvermi7996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
LTVQLGDVLRNKGKSGRASTSSGSLPAENFNISHSAPGIVSMVVKDGMVD
SRFFITTRPGDSRYLDGKYVAFARVVDGMDVLYRMEKLYARPGAIIQKPL
SVRILRCARVEPQQ*
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spliced messenger RNA

>Gvermi7996.t1 ID=Gvermi7996.t1|Name=Gvermi7996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..589902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGGCG
CGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATCGC
ACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGGAC
AGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGACGG
CAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTACC
GCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGCTT
TCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
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protein sequence of Gvermi7996.t1

>Gvermi7996.t1 ID=Gvermi7996.t1|Name=Gvermi7996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
LTVQLGDVLRNKGKSGRASTSSGSLPAENFNISHSAPGIVSMVVKDGMVD
SRFFITTRPGDSRYLDGKYVAFARVVDGMDVLYRMEKLYARPGAIIQKPL
SVRILRCARVEPQQ*
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mRNA from alignment at ScGOVlb_24226:589558..589902-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7996.t1 ID=Gvermi7996.t1|Name=Gvermi7996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..589902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGGCG
CGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATCGC
ACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGGAC
AGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGACGG
CAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTACC
GCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGCTT
TCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:589558..589902-

>Gvermi7996.t1 ID=Gvermi7996.t1|Name=Gvermi7996.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_24226:589558..589902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGACCGTTCAGCTCGGCGACGTGCTGCGCAACAAGGGCAAGTCCGGGCG
CGCGTCCACGTCCTCTGGCTCGCTGCCGGCCGAGAACTTCAATATATCGC
ACTCCGCCCCAGGCATCGTGTCCATGGTCGTCAAGGACGGCATGGTGGAC
AGCCGCTTCTTCATCACCACCCGCCCCGGCGACAGCCGCTACCTAGACGG
CAAGTACGTCGCCTTCGCCCGCGTCGTGGACGGCATGGACGTGCTGTACC
GCATGGAGAAGCTTTACGCTCGCCCCGGCGCCATCATCCAGAAGCCGCTT
TCCGTGCGCATCCTGCGCTGCGCCCGCGTTGAACCGCAACAATGA
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