Gvermi7926.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7926.t1
Unique NameGvermi7926.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length386
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:84614..85771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708044.1
PFAMsGlyco_transf_8,Mannosyl_trans3
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00171
KEGG koko:K00750
KEGG ReactionR00292,R03681
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000271,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0005977,GO:0005978,GO:0006073,GO:0006091,GO:0006112,GO:0008150,GO:0008152,GO:0008194,GO:0008466,GO:0009058,GO:0009059,GO:0009250,GO:0009987,GO:0015980,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0033692,GO:0034637,GO:0034645,GO:0035251,GO:0043170,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044424,GO:0044444,GO:0044464,GO:0046527,GO:0055114,GO:0071704,GO:1901576
Evalue6.9e-10
EggNOG OGsCOG5597@1|root,KOG1950@2759|Eukaryota
EC2.4.1.186
Descriptionglycogenin glucosyltransferase activity
COG categoryM
CAZyGT8
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7926Gvermi7926Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 84614..85771 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7926.t1.stop1Gvermi7926.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 84614..84616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7926.t1.CDS1Gvermi7926.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 84614..85771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7926.t1.exon1Gvermi7926.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 84614..85771 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7926.t1.start1Gvermi7926.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 85769..85771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7926.t1Gvermi7926.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 84614..85771 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7926.t1 ID=Gvermi7926.t1|Name=Gvermi7926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=386bp
LRAPSRLIPLFALNYDRLIYITPYSLVVSTLAPILSCQFCAAVNKPCAFS
TNLLVLTPDPALHQQLLHSSRSSSSNISRLCDDHPEAEACILNFHIPLDD
APLFPSSSQPPPPAMRLAPAIITPHYLYYPRMRWELPSDQCGIQAIIDFS
SPSFTRPTNIITLILLRLNRQWYHYRSQLHHVDTDSIFVEAAIVFAFLSA
TVAVYVRSLQTLPPSTAKHRRSLSIPPIVPHDLLIFFWLATCSTLNALTW
LLSVHVSQSCSSVPLAVLILLLNKILCSSAAYTALGAFFMRFATADDADG
ALLHTGITHRAPVVTAMLNVLEAAVVGTLVYVINVLPAETGFRRLVWLFL
AVAVYFLFWLYVAIVLFCMWLSAAATSPKMDRTRS*
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spliced messenger RNA

>Gvermi7926.t1 ID=Gvermi7926.t1|Name=Gvermi7926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:84614..85771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGTGCCCCGTCACGTCTCATCCCGCTCTTTGCTCTCAACTACGACAG
GCTCATCTACATCACCCCGTACTCACTCGTCGTGTCCACCCTCGCCCCGA
TTCTGAGCTGTCAGTTTTGTGCCGCTGTCAACAAACCCTGCGCCTTTTCC
ACCAACTTGCTCGTGCTCACCCCCGACCCCGCACTCCATCAGCAACTGCT
GCATTCCTCGCGCAGCTCATCATCCAACATCTCTCGCCTTTGCGACGACC
ATCCCGAAGCGGAGGCATGCATCCTCAATTTCCACATCCCATTGGACGAC
GCCCCATTGTTCCCTTCGTCATCTCAGCCCCCGCCCCCCGCCATGCGCTT
AGCACCCGCCATCATCACCCCCCATTACCTGTACTACCCGCGCATGCGAT
GGGAGCTGCCCTCTGATCAATGCGGCATACAAGCCATCATTGATTTTTCA
TCCCCGTCGTTCACTCGTCCGACCAACATCATCACTCTCATCTTGCTGCG
TCTCAATCGACAGTGGTACCACTACCGATCGCAGTTGCACCACGTCGACA
CCGACAGCATCTTTGTTGAAGCAGCTATCGTCTTCGCCTTTTTGTCTGCC
ACCGTTGCCGTGTACGTGCGCTCTCTGCAGACGCTCCCACCCTCAACAGC
AAAGCACCGTCGATCCCTTAGCATTCCCCCCATCGTACCCCACGATCTGC
TCATATTCTTCTGGCTTGCCACCTGTTCCACCCTTAACGCTCTCACATGG
CTGCTTTCCGTCCACGTCAGCCAGTCGTGTTCGTCTGTCCCGCTCGCCGT
TCTCATATTGCTGCTCAACAAGATTCTGTGCTCCTCCGCCGCGTACACCG
CTCTGGGCGCGTTTTTCATGCGCTTTGCTACTGCGGATGATGCCGATGGC
GCCCTTTTACATACCGGCATTACGCACCGTGCCCCCGTCGTCACTGCAAT
GCTTAATGTTCTGGAGGCCGCCGTGGTGGGCACCCTGGTTTATGTGATCA
ATGTGTTGCCTGCTGAGACTGGCTTTCGTCGACTGGTGTGGTTGTTCCTT
GCTGTGGCCGTCTACTTTTTGTTTTGGTTGTACGTTGCGATTGTACTATT
TTGCATGTGGTTGTCGGCCGCCGCTACCTCTCCAAAAATGGACAGGACAA
GATCTTAA
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protein sequence of Gvermi7926.t1

>Gvermi7926.t1 ID=Gvermi7926.t1|Name=Gvermi7926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=386bp
LRAPSRLIPLFALNYDRLIYITPYSLVVSTLAPILSCQFCAAVNKPCAFS
TNLLVLTPDPALHQQLLHSSRSSSSNISRLCDDHPEAEACILNFHIPLDD
APLFPSSSQPPPPAMRLAPAIITPHYLYYPRMRWELPSDQCGIQAIIDFS
SPSFTRPTNIITLILLRLNRQWYHYRSQLHHVDTDSIFVEAAIVFAFLSA
TVAVYVRSLQTLPPSTAKHRRSLSIPPIVPHDLLIFFWLATCSTLNALTW
LLSVHVSQSCSSVPLAVLILLLNKILCSSAAYTALGAFFMRFATADDADG
ALLHTGITHRAPVVTAMLNVLEAAVVGTLVYVINVLPAETGFRRLVWLFL
AVAVYFLFWLYVAIVLFCMWLSAAATSPKMDRTRS*
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mRNA from alignment at ScGOVlb_24226:84614..85771-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7926.t1 ID=Gvermi7926.t1|Name=Gvermi7926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:84614..85771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGTGCCCCGTCACGTCTCATCCCGCTCTTTGCTCTCAACTACGACAG
GCTCATCTACATCACCCCGTACTCACTCGTCGTGTCCACCCTCGCCCCGA
TTCTGAGCTGTCAGTTTTGTGCCGCTGTCAACAAACCCTGCGCCTTTTCC
ACCAACTTGCTCGTGCTCACCCCCGACCCCGCACTCCATCAGCAACTGCT
GCATTCCTCGCGCAGCTCATCATCCAACATCTCTCGCCTTTGCGACGACC
ATCCCGAAGCGGAGGCATGCATCCTCAATTTCCACATCCCATTGGACGAC
GCCCCATTGTTCCCTTCGTCATCTCAGCCCCCGCCCCCCGCCATGCGCTT
AGCACCCGCCATCATCACCCCCCATTACCTGTACTACCCGCGCATGCGAT
GGGAGCTGCCCTCTGATCAATGCGGCATACAAGCCATCATTGATTTTTCA
TCCCCGTCGTTCACTCGTCCGACCAACATCATCACTCTCATCTTGCTGCG
TCTCAATCGACAGTGGTACCACTACCGATCGCAGTTGCACCACGTCGACA
CCGACAGCATCTTTGTTGAAGCAGCTATCGTCTTCGCCTTTTTGTCTGCC
ACCGTTGCCGTGTACGTGCGCTCTCTGCAGACGCTCCCACCCTCAACAGC
AAAGCACCGTCGATCCCTTAGCATTCCCCCCATCGTACCCCACGATCTGC
TCATATTCTTCTGGCTTGCCACCTGTTCCACCCTTAACGCTCTCACATGG
CTGCTTTCCGTCCACGTCAGCCAGTCGTGTTCGTCTGTCCCGCTCGCCGT
TCTCATATTGCTGCTCAACAAGATTCTGTGCTCCTCCGCCGCGTACACCG
CTCTGGGCGCGTTTTTCATGCGCTTTGCTACTGCGGATGATGCCGATGGC
GCCCTTTTACATACCGGCATTACGCACCGTGCCCCCGTCGTCACTGCAAT
GCTTAATGTTCTGGAGGCCGCCGTGGTGGGCACCCTGGTTTATGTGATCA
ATGTGTTGCCTGCTGAGACTGGCTTTCGTCGACTGGTGTGGTTGTTCCTT
GCTGTGGCCGTCTACTTTTTGTTTTGGTTGTACGTTGCGATTGTACTATT
TTGCATGTGGTTGTCGGCCGCCGCTACCTCTCCAAAAATGGACAGGACAA
GATCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:84614..85771-

>Gvermi7926.t1 ID=Gvermi7926.t1|Name=Gvermi7926.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1158bp|location=Sequence derived from alignment at ScGOVlb_24226:84614..85771- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGTGCCCCGTCACGTCTCATCCCGCTCTTTGCTCTCAACTACGACAG
GCTCATCTACATCACCCCGTACTCACTCGTCGTGTCCACCCTCGCCCCGA
TTCTGAGCTGTCAGTTTTGTGCCGCTGTCAACAAACCCTGCGCCTTTTCC
ACCAACTTGCTCGTGCTCACCCCCGACCCCGCACTCCATCAGCAACTGCT
GCATTCCTCGCGCAGCTCATCATCCAACATCTCTCGCCTTTGCGACGACC
ATCCCGAAGCGGAGGCATGCATCCTCAATTTCCACATCCCATTGGACGAC
GCCCCATTGTTCCCTTCGTCATCTCAGCCCCCGCCCCCCGCCATGCGCTT
AGCACCCGCCATCATCACCCCCCATTACCTGTACTACCCGCGCATGCGAT
GGGAGCTGCCCTCTGATCAATGCGGCATACAAGCCATCATTGATTTTTCA
TCCCCGTCGTTCACTCGTCCGACCAACATCATCACTCTCATCTTGCTGCG
TCTCAATCGACAGTGGTACCACTACCGATCGCAGTTGCACCACGTCGACA
CCGACAGCATCTTTGTTGAAGCAGCTATCGTCTTCGCCTTTTTGTCTGCC
ACCGTTGCCGTGTACGTGCGCTCTCTGCAGACGCTCCCACCCTCAACAGC
AAAGCACCGTCGATCCCTTAGCATTCCCCCCATCGTACCCCACGATCTGC
TCATATTCTTCTGGCTTGCCACCTGTTCCACCCTTAACGCTCTCACATGG
CTGCTTTCCGTCCACGTCAGCCAGTCGTGTTCGTCTGTCCCGCTCGCCGT
TCTCATATTGCTGCTCAACAAGATTCTGTGCTCCTCCGCCGCGTACACCG
CTCTGGGCGCGTTTTTCATGCGCTTTGCTACTGCGGATGATGCCGATGGC
GCCCTTTTACATACCGGCATTACGCACCGTGCCCCCGTCGTCACTGCAAT
GCTTAATGTTCTGGAGGCCGCCGTGGTGGGCACCCTGGTTTATGTGATCA
ATGTGTTGCCTGCTGAGACTGGCTTTCGTCGACTGGTGTGGTTGTTCCTT
GCTGTGGCCGTCTACTTTTTGTTTTGGTTGTACGTTGCGATTGTACTATT
TTGCATGTGGTTGTCGGCCGCCGCTACCTCTCCAAAAATGGACAGGACAA
GATCTTAA
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