Gvermi8147.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8147.t1
Unique NameGvermi8147.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Homology
BLAST of Gvermi8147.t1 vs. uniprot
Match: A0A2V3IVZ6_9FLOR (Two-component response regulator-like APRR1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVZ6_9FLOR)

HSP 1 Score: 209 bits (532), Expect = 4.350e-66
Identity = 122/175 (69.71%), Postives = 136/175 (77.71%), Query Frame = 0
Query:    1 MSRISSETNLAVQLLLAVSDTRHSRLPSKSSRPNSSSATSSDLPADSSDDSESSNCVVTPNQSPSLRQKSVSQPNASPRGVPPTFGRGDATFFKYTFEERQEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGPPAKPKSSKNSDVSQRKDKAA 175
            +SRISSETNLAVQLLLAVSD RH R  ++  RP+SSSATSSD+PAD SDDS+S +   T  QSP+LRQK  + P+ SPRGVPPTF RGDATFFKYT EERQEALKRFREKKRRRQF+          LAETRPRYKGRFSKPPPGE YDDGTPGPP K +S+K +  S  KD  A
Sbjct:   12 LSRISSETNLAVQLLLAVSDARHCRPSTQHGRPHSSSATSSDMPADLSDDSDSIDSTPTSAQSPALRQKITTPPSTSPRGVPPTFARGDATFFKYTREERQEALKRFREKKRRRQFRXXXXXXXXXXLAETRPRYKGRFSKPPPGETYDDGTPGPPPKSQSTKQT-TSSAKDHTA 185          
BLAST of Gvermi8147.t1 vs. uniprot
Match: R7Q474_CHOCR (CCT domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q474_CHOCR)

HSP 1 Score: 144 bits (363), Expect = 1.180e-40
Identity = 97/170 (57.06%), Postives = 116/170 (68.24%), Query Frame = 0
Query:    1 MSRISSETNLAVQLLLAVSDTR--------HSRLPSKSSRPNSSSATSSDLPADSSDDSESSNCVVTPNQSPSLRQKSVSQPNASPRGVPPTFGRG-DATFFKYTFEERQEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGPPAKPKS 161
            M RI+SETNLAVQLLLAVS  R           LP+ S     SS +S   P ++  DS+++    +   SP++  K+ S P A  +      GRG D+T F+YT EER +ALKRFR+KKRRRQFQK+VRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGP A  K+
Sbjct:    1 MQRINSETNLAVQLLLAVSGDRPIVKRTPKRFALPAASPHIYRSSPSSCSEPGETCSDSDATEPATSAVASPAI-MKATSSPVALSKSH---HGRGADSTLFRYTREERLQALKRFRDKKRRRQFQKKVRYMVRKRLAETRPRYKGRFSKPPPGENYDDGTPGPQAPTKA 166          
BLAST of Gvermi8147.t1 vs. uniprot
Match: A0A7S1TEN3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TEN3_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 2.640e-7
Identity = 29/53 (54.72%), Postives = 44/53 (83.02%), Query Frame = 0
Query:   94 KYTFEERQEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGE 146
            +Y+ +ER+  ++R+REK+R+R F+K +RY +RK+LA+TRPR +GRFSKP P E
Sbjct:   72 RYSPQERRLRVERYREKRRQRSFKKTIRYDIRKKLADTRPRIRGRFSKPAPPE 124          
BLAST of Gvermi8147.t1 vs. uniprot
Match: A0A7S3BRR1_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BRR1_9VIRI)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-6
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   83 PTFGRGDATFFKYTFEERQEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSK 141
            P+   G      YT EERQE +K++R+K+ RR F+K+++Y+ RK LA++RPR +GRF++
Sbjct:  228 PSSSLGPRRIGAYTIEERQERIKKYRDKRHRRNFEKKIKYVCRKTLADSRPRVRGRFAR 286          
The following BLAST results are available for this feature:
BLAST of Gvermi8147.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IVZ6_9FLOR4.350e-6669.71Two-component response regulator-like APRR1 n=1 Ta... [more]
R7Q474_CHOCR1.180e-4057.06CCT domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S1TEN3_9RHOD2.640e-754.72Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S3BRR1_9VIRI4.480e-645.76Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010402CCT domainPFAMPF06203CCTcoord: 100..141
e-value: 8.8E-15
score: 54.5
IPR010402CCT domainPROSITEPS51017CCTcoord: 100..142
score: 14.76298
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..175
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
IPR045281Zinc finger protein CONSTANS-likePANTHERPTHR31319ZINC FINGER PROTEIN CONSTANS-LIKE 4coord: 42..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1240326..1240853 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8147.t1Gvermi8147.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 1240326..1240853 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8147.t1 ID=Gvermi8147.t1|Name=Gvermi8147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MSRISSETNLAVQLLLAVSDTRHSRLPSKSSRPNSSSATSSDLPADSSDD
SESSNCVVTPNQSPSLRQKSVSQPNASPRGVPPTFGRGDATFFKYTFEER
QEALKRFREKKRRRQFQKRVRYMVRKRLAETRPRYKGRFSKPPPGENYDD
GTPGPPAKPKSSKNSDVSQRKDKAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010402CCT_domain
IPR045281CONSTANS-like