Gvermi8203.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8203.t1
Unique NameGvermi8203.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length188
Homology
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BLAST of Gvermi8203.t1 vs. uniprot
Match: A0A2V3IH48_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH48_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 8.790e-68
Identity = 104/155 (67.10%), Postives = 124/155 (80.00%), Query Frame = 0 
Query:    1 MSDRHRSTTSRCLGHVATAFIAPDGGNPNLVAKTIATLWYFLILPDAKARFNRQVYRKRLPWYAPSRVFGLLLSAANIATIPLSWALLVAGKRNASRLACLSVLLNPPTISLTWILIKELSTTTARRTYRIGCASVDAVTNQFKPKKGPRSDATS 155
            MSD H STT RCLG VAT  IA DGG  N+VAKT+ATLWY LILPDA+ARF+RQVYRKRLPWYAP RVFGL+LSAANIAT+PLSW LL AG+RNASR+AC SVLLNPPTI+L+ ++++ELS+   R+ YRIG  S D +T  FK K+   +  +S
Sbjct:    1 MSD-HSSTTRRCLGEVATVLIAQDGGRANIVAKTLATLWYILILPDAQARFHRQVYRKRLPWYAPGRVFGLMLSAANIATMPLSWVLLFAGRRNASRVACFSVLLNPPTITLSSLIVRELSSALVRKAYRIGLTSADVITKPFKSKESSNTKTSS 154
The following BLAST results are available for this feature:
BLAST of Gvermi8203.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IH48_9FLOR8.790e-6867.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..187
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 68..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 48..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..187
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 30..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..117
NoneNo IPR availableTMHMMTMhelixcoord: 68..90
NoneNo IPR availableTMHMMTMhelixcoord: 95..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1560018..1560581 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1Gvermi8203.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 1560018..1560581 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=188bp
MSDRHRSTTSRCLGHVATAFIAPDGGNPNLVAKTIATLWYFLILPDAKAR
FNRQVYRKRLPWYAPSRVFGLLLSAANIATIPLSWALLVAGKRNASRLAC
LSVLLNPPTISLTWILIKELSTTTARRTYRIGCASVDAVTNQFKPKKGPR
SDATSAPASETTPTTASTSAPESTSSTSETTPAPKQT*
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