Gvermi8203.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8203.t1
Unique NameGvermi8203.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1560018..1560581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8203Gvermi8203Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1560018..1560581 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1.stop1Gvermi8203.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1560018..1560020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1.CDS1Gvermi8203.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1560018..1560581 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1.exon1Gvermi8203.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1560018..1560581 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1.start1Gvermi8203.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1560579..1560581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8203.t1Gvermi8203.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1560018..1560581 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=188bp
MSDRHRSTTSRCLGHVATAFIAPDGGNPNLVAKTIATLWYFLILPDAKAR
FNRQVYRKRLPWYAPSRVFGLLLSAANIATIPLSWALLVAGKRNASRLAC
LSVLLNPPTISLTWILIKELSTTTARRTYRIGCASVDAVTNQFKPKKGPR
SDATSAPASETTPTTASTSAPESTSSTSETTPAPKQT*
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spliced messenger RNA

>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_24226:1560018..1560581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATCGTCATCGCTCCACAACCAGCCGCTGTCTCGGTCATGTGGC
CACCGCGTTCATCGCACCAGACGGAGGCAACCCCAACTTGGTCGCCAAGA
CCATTGCCACTCTATGGTACTTTCTGATTCTGCCTGACGCCAAAGCCCGT
TTCAACCGTCAGGTGTACCGTAAGCGATTACCGTGGTATGCACCAAGTAG
AGTTTTCGGTCTCTTGCTCTCCGCCGCTAACATCGCCACCATTCCTCTGT
CATGGGCACTTCTCGTCGCGGGTAAGCGAAACGCTTCTCGACTCGCCTGC
CTAAGTGTATTGCTCAATCCACCAACCATATCACTTACGTGGATTCTCAT
TAAGGAGTTGTCCACAACGACGGCCCGGAGAACGTATCGCATCGGATGCG
CATCGGTGGATGCCGTGACCAACCAGTTCAAACCGAAGAAAGGCCCTCGA
TCTGACGCCACTTCCGCCCCTGCATCGGAGACAACACCAACAACTGCCTC
TACCAGTGCCCCGGAGAGCACGTCCTCCACATCTGAGACCACACCTGCAC
CTAAACAAACTTAA
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protein sequence of Gvermi8203.t1

>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=188bp
MSDRHRSTTSRCLGHVATAFIAPDGGNPNLVAKTIATLWYFLILPDAKAR
FNRQVYRKRLPWYAPSRVFGLLLSAANIATIPLSWALLVAGKRNASRLAC
LSVLLNPPTISLTWILIKELSTTTARRTYRIGCASVDAVTNQFKPKKGPR
SDATSAPASETTPTTASTSAPESTSSTSETTPAPKQT*
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mRNA from alignment at ScGOVlb_24226:1560018..1560581-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=564bp|location=Sequence derived from alignment at ScGOVlb_24226:1560018..1560581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATCGTCATCGCTCCACAACCAGCCGCTGTCTCGGTCATGTGGC
CACCGCGTTCATCGCACCAGACGGAGGCAACCCCAACTTGGTCGCCAAGA
CCATTGCCACTCTATGGTACTTTCTGATTCTGCCTGACGCCAAAGCCCGT
TTCAACCGTCAGGTGTACCGTAAGCGATTACCGTGGTATGCACCAAGTAG
AGTTTTCGGTCTCTTGCTCTCCGCCGCTAACATCGCCACCATTCCTCTGT
CATGGGCACTTCTCGTCGCGGGTAAGCGAAACGCTTCTCGACTCGCCTGC
CTAAGTGTATTGCTCAATCCACCAACCATATCACTTACGTGGATTCTCAT
TAAGGAGTTGTCCACAACGACGGCCCGGAGAACGTATCGCATCGGATGCG
CATCGGTGGATGCCGTGACCAACCAGTTCAAACCGAAGAAAGGCCCTCGA
TCTGACGCCACTTCCGCCCCTGCATCGGAGACAACACCAACAACTGCCTC
TACCAGTGCCCCGGAGAGCACGTCCTCCACATCTGAGACCACACCTGCAC
CTAAACAAACTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1560018..1560581-

>Gvermi8203.t1 ID=Gvermi8203.t1|Name=Gvermi8203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=564bp|location=Sequence derived from alignment at ScGOVlb_24226:1560018..1560581- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGGATCGTCATCGCTCCACAACCAGCCGCTGTCTCGGTCATGTGGC
CACCGCGTTCATCGCACCAGACGGAGGCAACCCCAACTTGGTCGCCAAGA
CCATTGCCACTCTATGGTACTTTCTGATTCTGCCTGACGCCAAAGCCCGT
TTCAACCGTCAGGTGTACCGTAAGCGATTACCGTGGTATGCACCAAGTAG
AGTTTTCGGTCTCTTGCTCTCCGCCGCTAACATCGCCACCATTCCTCTGT
CATGGGCACTTCTCGTCGCGGGTAAGCGAAACGCTTCTCGACTCGCCTGC
CTAAGTGTATTGCTCAATCCACCAACCATATCACTTACGTGGATTCTCAT
TAAGGAGTTGTCCACAACGACGGCCCGGAGAACGTATCGCATCGGATGCG
CATCGGTGGATGCCGTGACCAACCAGTTCAAACCGAAGAAAGGCCCTCGA
TCTGACGCCACTTCCGCCCCTGCATCGGAGACAACACCAACAACTGCCTC
TACCAGTGCCCCGGAGAGCACGTCCTCCACATCTGAGACCACACCTGCAC
CTAAACAAACTTAA
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