Gvermi7949.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7949.t1
Unique NameGvermi7949.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:284942..285986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7949Gvermi7949Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 284942..285986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1Gvermi7949.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 284942..285986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1.start1Gvermi7949.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 284942..284944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1.CDS1Gvermi7949.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 284942..285508 +
Gvermi7949.t1.CDS2Gvermi7949.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 285600..285986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1.exon1Gvermi7949.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 284942..285508 +
Gvermi7949.t1.exon2Gvermi7949.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 285600..285986 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1.intron1Gvermi7949.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 285509..285599 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7949.t1.stop1Gvermi7949.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 285984..285986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7949.t1 ID=Gvermi7949.t1|Name=Gvermi7949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp
MRCHLTLFMLINVACLSLAIKGVEYLISDDFAGHSLVCQGQCHKAQSSSV
HLAAPFGSDANSFYDNLRMVLPLSAPKENVHPSVSRKSADKDEDSKNEAA
DETPSEDTCKKADCALLKEKLNCSTAGTYSRIAFVPLLSIKGGGYLFASV
SSGITGLRDRYFSMEDEGGPAGYTVFVGSPKGMPTTVFAILQPTRAGSTT
NGPLKFSIEQALISSPSRARIPLRSKLVRVGKFENLACTFDEDSPFRPLP
RGLVREIESDSLLSANGYFKIAFKAQTNITSVALTLGRKQCAAVVLSTAP
PCCVVRADIPVSYGSGC*
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spliced messenger RNA

>Gvermi7949.t1 ID=Gvermi7949.t1|Name=Gvermi7949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=954bp|location=Sequence derived from alignment at ScGOVlb_24226:284942..285986+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTGTCACTTAACTCTCTTCATGCTAATCAACGTGGCTTGCTTGTC
GCTTGCCATAAAGGGGGTAGAGTACTTGATTTCTGATGACTTTGCTGGCC
ATTCGCTTGTCTGCCAGGGTCAGTGTCACAAGGCGCAATCATCATCTGTT
CATCTCGCGGCCCCATTCGGCTCAGATGCCAACTCGTTCTATGACAATCT
GAGAATGGTTTTACCGCTTAGCGCGCCCAAAGAAAACGTACATCCGTCTG
TCTCTCGCAAGTCAGCGGACAAGGATGAGGATTCTAAGAACGAGGCTGCA
GATGAAACACCGTCGGAGGACACTTGTAAGAAGGCTGACTGTGCGCTGCT
CAAGGAAAAGTTGAACTGCTCTACCGCAGGCACGTATTCCAGGATTGCAT
TCGTCCCACTCCTGAGCATCAAAGGTGGCGGTTATTTGTTTGCGAGTGTC
TCATCCGGCATTACTGGATTGCGAGACAGGTATTTCTCAATGGAAGACGA
AGGCGGGCCTGCAGGGTACACCGTTTTTGTCGGGTCTCCAAAGGGGATGC
CTACGACGGTATTTGCGATCCTCCAACCGACGCGCGCTGGCTCGACAACG
AACGGACCATTGAAATTCTCGATTGAGCAAGCGCTTATTTCGTCGCCGTC
ACGGGCGCGAATTCCTCTGAGGTCCAAGCTCGTGCGAGTTGGAAAGTTCG
AGAATCTGGCGTGCACGTTCGACGAAGACAGTCCTTTCCGCCCTCTGCCC
CGGGGCTTGGTGCGAGAAATCGAAAGCGATAGCCTGTTGTCTGCGAATGG
TTATTTCAAAATCGCCTTCAAGGCGCAAACGAATATCACCTCAGTTGCGC
TTACCCTGGGGCGCAAGCAATGCGCGGCAGTTGTGCTGAGCACGGCGCCT
CCATGCTGCGTCGTGAGAGCTGATATTCCGGTTTCTTACGGAAGTGGTTG
CTGA
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protein sequence of Gvermi7949.t1

>Gvermi7949.t1 ID=Gvermi7949.t1|Name=Gvermi7949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=318bp
MRCHLTLFMLINVACLSLAIKGVEYLISDDFAGHSLVCQGQCHKAQSSSV
HLAAPFGSDANSFYDNLRMVLPLSAPKENVHPSVSRKSADKDEDSKNEAA
DETPSEDTCKKADCALLKEKLNCSTAGTYSRIAFVPLLSIKGGGYLFASV
SSGITGLRDRYFSMEDEGGPAGYTVFVGSPKGMPTTVFAILQPTRAGSTT
NGPLKFSIEQALISSPSRARIPLRSKLVRVGKFENLACTFDEDSPFRPLP
RGLVREIESDSLLSANGYFKIAFKAQTNITSVALTLGRKQCAAVVLSTAP
PCCVVRADIPVSYGSGC*
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mRNA from alignment at ScGOVlb_24226:284942..285986+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7949.t1 ID=Gvermi7949.t1|Name=Gvermi7949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1045bp|location=Sequence derived from alignment at ScGOVlb_24226:284942..285986+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTGTCACTTAACTCTCTTCATGCTAATCAACGTGGCTTGCTTGTC
GCTTGCCATAAAGGGGGTAGAGTACTTGATTTCTGATGACTTTGCTGGCC
ATTCGCTTGTCTGCCAGGGTCAGTGTCACAAGGCGCAATCATCATCTGTT
CATCTCGCGGCCCCATTCGGCTCAGATGCCAACTCGTTCTATGACAATCT
GAGAATGGTTTTACCGCTTAGCGCGCCCAAAGAAAACGTACATCCGTCTG
TCTCTCGCAAGTCAGCGGACAAGGATGAGGATTCTAAGAACGAGGCTGCA
GATGAAACACCGTCGGAGGACACTTGTAAGAAGGCTGACTGTGCGCTGCT
CAAGGAAAAGTTGAACTGCTCTACCGCAGGCACGTATTCCAGGATTGCAT
TCGTCCCACTCCTGAGCATCAAAGGTGGCGGTTATTTGTTTGCGAGTGTC
TCATCCGGCATTACTGGATTGCGAGACAGGTATTTCTCAATGGAAGACGA
AGGCGGGCCTGCAGGGTACACCGTTTTTGTCGGGTCTCCAAAGGGGATGC
CTACGACGGTATTTGCGGTACGGCCCTTCACCTTGTACGAGAAATTCGGT
TTGACCGACCAAGTTTGTAATGACTAACGTGTGAGCGCTCTTTGTTCCTG
CGATGCAGATCCTCCAACCGACGCGCGCTGGCTCGACAACGAACGGACCA
TTGAAATTCTCGATTGAGCAAGCGCTTATTTCGTCGCCGTCACGGGCGCG
AATTCCTCTGAGGTCCAAGCTCGTGCGAGTTGGAAAGTTCGAGAATCTGG
CGTGCACGTTCGACGAAGACAGTCCTTTCCGCCCTCTGCCCCGGGGCTTG
GTGCGAGAAATCGAAAGCGATAGCCTGTTGTCTGCGAATGGTTATTTCAA
AATCGCCTTCAAGGCGCAAACGAATATCACCTCAGTTGCGCTTACCCTGG
GGCGCAAGCAATGCGCGGCAGTTGTGCTGAGCACGGCGCCTCCATGCTGC
GTCGTGAGAGCTGATATTCCGGTTTCTTACGGAAGTGGTTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:284942..285986+

>Gvermi7949.t1 ID=Gvermi7949.t1|Name=Gvermi7949.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=954bp|location=Sequence derived from alignment at ScGOVlb_24226:284942..285986+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGTGTCACTTAACTCTCTTCATGCTAATCAACGTGGCTTGCTTGTC
GCTTGCCATAAAGGGGGTAGAGTACTTGATTTCTGATGACTTTGCTGGCC
ATTCGCTTGTCTGCCAGGGTCAGTGTCACAAGGCGCAATCATCATCTGTT
CATCTCGCGGCCCCATTCGGCTCAGATGCCAACTCGTTCTATGACAATCT
GAGAATGGTTTTACCGCTTAGCGCGCCCAAAGAAAACGTACATCCGTCTG
TCTCTCGCAAGTCAGCGGACAAGGATGAGGATTCTAAGAACGAGGCTGCA
GATGAAACACCGTCGGAGGACACTTGTAAGAAGGCTGACTGTGCGCTGCT
CAAGGAAAAGTTGAACTGCTCTACCGCAGGCACGTATTCCAGGATTGCAT
TCGTCCCACTCCTGAGCATCAAAGGTGGCGGTTATTTGTTTGCGAGTGTC
TCATCCGGCATTACTGGATTGCGAGACAGGTATTTCTCAATGGAAGACGA
AGGCGGGCCTGCAGGGTACACCGTTTTTGTCGGGTCTCCAAAGGGGATGC
CTACGACGGTATTTGCGATCCTCCAACCGACGCGCGCTGGCTCGACAACG
AACGGACCATTGAAATTCTCGATTGAGCAAGCGCTTATTTCGTCGCCGTC
ACGGGCGCGAATTCCTCTGAGGTCCAAGCTCGTGCGAGTTGGAAAGTTCG
AGAATCTGGCGTGCACGTTCGACGAAGACAGTCCTTTCCGCCCTCTGCCC
CGGGGCTTGGTGCGAGAAATCGAAAGCGATAGCCTGTTGTCTGCGAATGG
TTATTTCAAAATCGCCTTCAAGGCGCAAACGAATATCACCTCAGTTGCGC
TTACCCTGGGGCGCAAGCAATGCGCGGCAGTTGTGCTGAGCACGGCGCCT
CCATGCTGCGTCGTGAGAGCTGATATTCCGGTTTCTTACGGAAGTGGTTG
CTGA
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