Gvermi7999.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7999.t1
Unique NameGvermi7999.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length189
Homology
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BLAST of Gvermi7999.t1 vs. uniprot
Match: A0A2V3J6H0_9FLOR (Sen15 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6H0_9FLOR)

HSP 1 Score: 186 bits (471), Expect = 2.260e-56
Identity = 100/173 (57.80%), Postives = 125/173 (72.25%), Query Frame = 0 
Query:   16 PLALYDAFLSANNLSDDLNGELLYQVFQDLLRIRRWTNLRVCRSARRAYIAGSAARAFDSVFGSGADSEHADRTQVVVPLSACDSLSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIVDTRWKTKKVRTEEGG-GTEEKDENDVEQRSDSSRSVDSD 187
            P+  + +FL +N L D    ++LYQVFQDL  IR+WT LRV + A R Y+AGSAA AFDSV+      +  DRTQVVVP+SA + LS  ++ ALC ECVHPE G +LRC+TLAIVDDDSTTAYYR+ + WEEIV  +WK KK    EGG GTEE+D+NDV + S+SS + DSD
Sbjct:   39 PIQSFMSFLISNGLQDCDQAQVLYQVFQDLRLIRKWTGLRVSQRASRPYLAGSAAAAFDSVYKDKDMDKGEDRTQVVVPVSAWEELSALDLQALCRECVHPETGEQLRCMTLAIVDDDSTTAYYRIFSTWEEIVHPQWKMKKKHKTEGGIGTEERDQNDVVEESESSSNSDSD 211
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BLAST of Gvermi7999.t1 vs. uniprot
Match: R7QIT3_CHOCR (Sen15 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIT3_CHOCR)

HSP 1 Score: 90.5 bits (223), Expect = 2.240e-20
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 0 
Query:   93 VPLSACDSLSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIVDTRWKTKKVRTEE---GGGTEEK 169
            +P+S  + LSP ++  LC  C+HPE G KLRC+T+AIVDDDSTTAYYR+ +++ EIV  +WK KK RT+      GTEEK
Sbjct:    1 MPMSIQEKLSPFKLKELCRACIHPETGKKLRCMTVAIVDDDSTTAYYRIFDSFAEIVHPQWKQKKKRTKNEDVANGTEEK 80
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BLAST of Gvermi7999.t1 vs. uniprot
Match: M2WRZ3_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WRZ3_GALSU)

HSP 1 Score: 55.8 bits (133), Expect = 9.280e-6
Identity = 34/113 (30.09%), Postives = 62/113 (54.87%), Query Frame = 0 
Query:   39 YQVFQDLLRIRRWTNLRVCRSAR--RAYIAGSAARAFDSVFGSGADSEHADRTQVVVPLSACDSLSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIV 149
            +QV +DL  +R+W+ +RV    +  R  I GS      ++F S     ++     V+P+     LSP  M  L  E +  + GHK+     AI+++D+TT+YYR+ N++++++
Sbjct: 2069 FQVAKDLYLVRKWSFIRVVPLVKLQRYVIVGS-----PNLFHSQTPCLYS-----VIPVPTDSMLSPAIMNVLVHEGMKEKFGHKMTACIFAIIENDTTTSYYRITNSFDDLI 2171
The following BLAST results are available for this feature:
BLAST of Gvermi7999.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J6H0_9FLOR2.260e-5657.80Sen15 domain-containing protein n=1 Tax=Gracilario... [more]
R7QIT3_CHOCR2.240e-2055.00Sen15 domain-containing protein n=1 Tax=Chondrus c... [more]
M2WRZ3_GALSU9.280e-630.09Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018593tRNA-splicing endonuclease subunit Sen15PFAMPF09631Sen15coord: 40..143
e-value: 3.3E-13
score: 49.9
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 20..142
e-value: 1.9E-15
score: 58.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..188
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 24..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:600663..601229 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1Gvermi7999.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 600663..601229 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=189bp
MNQGEAQARAADAELPLALYDAFLSANNLSDDLNGELLYQVFQDLLRIRR
WTNLRVCRSARRAYIAGSAARAFDSVFGSGADSEHADRTQVVVPLSACDS
LSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIVD
TRWKTKKVRTEEGGGTEEKDENDVEQRSDSSRSVDSDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018593tRNA-endonuc_su_Sen15
IPR011856tRNA_endonuc-like_dom_sf
IPR036167tRNA_intron_Endo_cat-like_sf