Gvermi7999.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7999.t1
Unique NameGvermi7999.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:600663..601229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7999Gvermi7999Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 600663..601229 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1.start1Gvermi7999.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 600663..600665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1.CDS1Gvermi7999.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 600663..601229 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1.exon1Gvermi7999.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 600663..601229 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1.stop1Gvermi7999.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 601227..601229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7999.t1Gvermi7999.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 600663..601229 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=189bp
MNQGEAQARAADAELPLALYDAFLSANNLSDDLNGELLYQVFQDLLRIRR
WTNLRVCRSARRAYIAGSAARAFDSVFGSGADSEHADRTQVVVPLSACDS
LSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIVD
TRWKTKKVRTEEGGGTEEKDENDVEQRSDSSRSVDSDD*
back to top

spliced messenger RNA

>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_24226:600663..601229+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCAAGGCGAGGCGCAAGCGCGCGCGGCTGACGCCGAGCTCCCGCT
GGCGCTGTACGACGCGTTCCTCAGCGCAAACAATCTCAGCGACGACCTCA
ACGGCGAGCTGCTGTACCAGGTGTTCCAGGACCTGCTGCGCATCCGGCGG
TGGACCAACCTGCGCGTGTGCCGCAGCGCGCGGCGCGCCTACATCGCCGG
CTCGGCGGCGCGCGCCTTCGACTCCGTGTTCGGCAGCGGCGCCGACAGCG
AGCACGCGGACCGCACGCAGGTCGTGGTGCCGCTCAGCGCGTGCGACTCG
CTGTCGCCGCGCGAGATGTACGCGCTGTGTGACGAGTGCGTGCACCCCGA
ACACGGCCACAAACTGCGGTGCGTCACGCTGGCCATCGTGGACGACGACA
GCACGACGGCGTACTATCGCGTGATGAACGCCTGGGAGGAGATTGTGGAC
ACGCGGTGGAAGACGAAGAAAGTGAGGACGGAGGAGGGCGGCGGAACGGA
GGAGAAGGATGAAAACGACGTGGAGCAGCGAAGCGATTCGTCGCGCTCTG
TGGACTCGGATGACTAA
back to top

protein sequence of Gvermi7999.t1

>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=189bp
MNQGEAQARAADAELPLALYDAFLSANNLSDDLNGELLYQVFQDLLRIRR
WTNLRVCRSARRAYIAGSAARAFDSVFGSGADSEHADRTQVVVPLSACDS
LSPREMYALCDECVHPEHGHKLRCVTLAIVDDDSTTAYYRVMNAWEEIVD
TRWKTKKVRTEEGGGTEEKDENDVEQRSDSSRSVDSDD*
back to top

mRNA from alignment at ScGOVlb_24226:600663..601229+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=567bp|location=Sequence derived from alignment at ScGOVlb_24226:600663..601229+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCAAGGCGAGGCGCAAGCGCGCGCGGCTGACGCCGAGCTCCCGCT
GGCGCTGTACGACGCGTTCCTCAGCGCAAACAATCTCAGCGACGACCTCA
ACGGCGAGCTGCTGTACCAGGTGTTCCAGGACCTGCTGCGCATCCGGCGG
TGGACCAACCTGCGCGTGTGCCGCAGCGCGCGGCGCGCCTACATCGCCGG
CTCGGCGGCGCGCGCCTTCGACTCCGTGTTCGGCAGCGGCGCCGACAGCG
AGCACGCGGACCGCACGCAGGTCGTGGTGCCGCTCAGCGCGTGCGACTCG
CTGTCGCCGCGCGAGATGTACGCGCTGTGTGACGAGTGCGTGCACCCCGA
ACACGGCCACAAACTGCGGTGCGTCACGCTGGCCATCGTGGACGACGACA
GCACGACGGCGTACTATCGCGTGATGAACGCCTGGGAGGAGATTGTGGAC
ACGCGGTGGAAGACGAAGAAAGTGAGGACGGAGGAGGGCGGCGGAACGGA
GGAGAAGGATGAAAACGACGTGGAGCAGCGAAGCGATTCGTCGCGCTCTG
TGGACTCGGATGACTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_24226:600663..601229+

>Gvermi7999.t1 ID=Gvermi7999.t1|Name=Gvermi7999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=567bp|location=Sequence derived from alignment at ScGOVlb_24226:600663..601229+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCAAGGCGAGGCGCAAGCGCGCGCGGCTGACGCCGAGCTCCCGCT
GGCGCTGTACGACGCGTTCCTCAGCGCAAACAATCTCAGCGACGACCTCA
ACGGCGAGCTGCTGTACCAGGTGTTCCAGGACCTGCTGCGCATCCGGCGG
TGGACCAACCTGCGCGTGTGCCGCAGCGCGCGGCGCGCCTACATCGCCGG
CTCGGCGGCGCGCGCCTTCGACTCCGTGTTCGGCAGCGGCGCCGACAGCG
AGCACGCGGACCGCACGCAGGTCGTGGTGCCGCTCAGCGCGTGCGACTCG
CTGTCGCCGCGCGAGATGTACGCGCTGTGTGACGAGTGCGTGCACCCCGA
ACACGGCCACAAACTGCGGTGCGTCACGCTGGCCATCGTGGACGACGACA
GCACGACGGCGTACTATCGCGTGATGAACGCCTGGGAGGAGATTGTGGAC
ACGCGGTGGAAGACGAAGAAAGTGAGGACGGAGGAGGGCGGCGGAACGGA
GGAGAAGGATGAAAACGACGTGGAGCAGCGAAGCGATTCGTCGCGCTCTG
TGGACTCGGATGACTAA
back to top