Gvermi8021.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8021.t1
Unique NameGvermi8021.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length596
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:677266..679265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703465.1
Preferred namePPP1R42
PFAMsDUF1115,LRR_4,LRR_9,PRP3
Max annot lvl2759|Eukaryota
KEGG koko:K12843,ko:K17579
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0002177,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008092,GO:0008150,GO:0008152,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0010921,GO:0015630,GO:0015631,GO:0016070,GO:0016071,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0030532,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035303,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044030,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046540,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051171,GO:0051174,GO:0051336,GO:0060255,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070840,GO:0071704,GO:0080090,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
Evalue9.69e-47
EggNOG OGsKOG2769@1|root,KOG2769@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryS
BRITEko00000,ko00001,ko00002,ko01009,ko03041,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8021Gvermi8021Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 677266..679265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1Gvermi8021.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 677266..679265 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1.stop1Gvermi8021.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 677266..677268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1.CDS1Gvermi8021.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 677266..678988 -
Gvermi8021.t1.CDS2Gvermi8021.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 679107..679125 -
Gvermi8021.t1.CDS3Gvermi8021.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 679220..679265 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1.exon1Gvermi8021.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 677266..678988 -
Gvermi8021.t1.exon2Gvermi8021.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 679107..679125 -
Gvermi8021.t1.exon3Gvermi8021.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 679220..679265 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1.intron1Gvermi8021.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 678989..679106 -
Gvermi8021.t1.intron2Gvermi8021.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 679126..679219 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8021.t1.start1Gvermi8021.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 679263..679265 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8021.t1 ID=Gvermi8021.t1|Name=Gvermi8021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=596bp
MPLRSWLDSDPSYSPRPERDFRRRGRSRFTALDEVTGTVDTVLPNPERNK
QSSANGTQTVLSNPAVAALRAANASFQHAQGHRTETVEHKELNNVPKSSL
GNATQPKKRRRGPRFATAEPSIAEKPKQTFATNPPIAPIFPHFSASQNGP
ASGKIDLSAIPIAPVSTLRINRTVQKKRKLDAVLKLSENDLLDKDPTRNP
YYDPTIKNTISRSRPPREIKFKAPGEIADRAERKRETVLIQARREEYRKR
LAEGEGELPVLPPLSKDLRVKDASIPEWEWWDQPFIAEVSRVSVPADKDG
DVDMSNCFNVREDRITHYIHHPPPIIPAVPQKPPPVLPLMLTKKETKKLR
RQRRQEVQKEKQEMVALGLIPPPPPKVKLSNMRRVLLSEVTADPTKVEQQ
VRQQMEERKRKHELANEERKKSQEERREAAREKLINDKNAGLFAAVYRLG
AVHGGQKFKVSVNARQLSLNGALVLYDTFNVVVVEGGSKALRKFKKLMLR
RINWNESEKKNDSEISENNSGTLDREEGEHEKKGCVLLWEGRVAKPSFEQ
FQTMSLPKEVECRGMFRKRGVEHYWNLCAQASPAGNDGLGIKEIG*
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spliced messenger RNA

>Gvermi8021.t1 ID=Gvermi8021.t1|Name=Gvermi8021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at ScGOVlb_24226:677266..679265- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTTACGAAGCTGGCTCGATTCTGATCCATCTTACAGCCCTCGCCC
CGAGAGAGATTTTCGACGGCGAGGCCGCTCTCGTTTTACCGCTCTAGACG
AAGTAACCGGAACAGTTGATACGGTACTGCCTAACCCTGAACGCAACAAA
CAAAGCTCTGCAAATGGGACTCAAACAGTGTTGTCCAACCCAGCTGTTGC
CGCGCTGCGAGCAGCCAATGCTTCTTTCCAGCACGCCCAAGGTCATAGGA
CAGAGACAGTGGAGCACAAGGAACTGAATAATGTTCCAAAATCGTCTTTG
GGGAACGCCACTCAGCCCAAAAAGCGACGCAGGGGCCCGCGTTTTGCAAC
CGCAGAACCGTCCATTGCCGAGAAACCAAAACAAACATTCGCAACAAACC
CTCCAATAGCACCGATTTTTCCCCACTTCTCTGCCTCGCAAAATGGTCCC
GCTTCTGGCAAAATTGATCTTTCAGCAATCCCAATAGCTCCTGTTTCCAC
ATTACGCATTAACAGAACTGTGCAAAAGAAGCGCAAGTTGGATGCTGTCT
TGAAATTGTCTGAGAATGACCTGCTTGATAAGGATCCAACTCGAAATCCG
TATTATGATCCTACTATTAAGAATACTATATCTCGATCTCGACCTCCACG
AGAAATCAAATTTAAAGCACCGGGAGAAATTGCGGACCGAGCAGAACGAA
AAAGAGAAACGGTCTTGATCCAAGCCCGGCGAGAAGAGTATCGCAAGCGT
CTTGCGGAAGGAGAAGGGGAACTTCCTGTACTTCCACCGTTATCGAAGGA
TTTACGCGTAAAAGATGCATCAATACCCGAATGGGAATGGTGGGATCAAC
CGTTCATTGCCGAAGTTTCCAGAGTTTCTGTTCCAGCCGATAAGGACGGC
GATGTTGACATGAGCAATTGCTTTAATGTACGAGAAGATCGCATAACTCA
TTACATACACCACCCACCTCCGATTATTCCAGCTGTTCCGCAGAAGCCGC
CACCTGTGCTCCCCCTCATGCTTACAAAGAAAGAGACCAAGAAACTCAGA
AGGCAAAGGCGTCAAGAGGTTCAAAAAGAGAAACAAGAAATGGTTGCTCT
CGGGCTCATCCCTCCGCCACCCCCAAAAGTTAAGTTAAGCAATATGAGGC
GCGTGCTATTGTCAGAAGTTACCGCAGATCCAACAAAAGTGGAGCAACAA
GTCCGGCAGCAGATGGAAGAGAGGAAGCGAAAACATGAATTAGCAAATGA
AGAAAGGAAAAAAAGTCAAGAGGAACGGCGAGAGGCTGCTCGTGAAAAGC
TGATTAACGATAAAAATGCAGGATTGTTTGCTGCCGTGTATAGATTAGGC
GCCGTACATGGAGGGCAGAAGTTCAAAGTGAGTGTGAATGCACGACAGCT
CAGTTTAAACGGTGCTCTTGTCCTATACGATACTTTTAATGTTGTTGTGG
TTGAGGGAGGAAGTAAGGCGCTTCGTAAGTTCAAAAAGCTCATGTTAAGG
CGTATAAACTGGAACGAAAGCGAGAAGAAGAATGATTCCGAGATATCCGA
GAACAATTCTGGCACTCTAGACCGCGAGGAAGGAGAGCATGAAAAGAAAG
GCTGCGTTCTCCTGTGGGAGGGCCGAGTAGCGAAGCCAAGTTTTGAGCAA
TTTCAGACAATGTCTCTTCCAAAGGAAGTGGAATGTCGGGGTATGTTTCG
GAAGCGAGGTGTTGAACACTACTGGAACTTGTGCGCTCAGGCTAGTCCTG
CTGGGAATGATGGCCTCGGTATTAAAGAAATTGGGTAA
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protein sequence of Gvermi8021.t1

>Gvermi8021.t1 ID=Gvermi8021.t1|Name=Gvermi8021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=596bp
MPLRSWLDSDPSYSPRPERDFRRRGRSRFTALDEVTGTVDTVLPNPERNK
QSSANGTQTVLSNPAVAALRAANASFQHAQGHRTETVEHKELNNVPKSSL
GNATQPKKRRRGPRFATAEPSIAEKPKQTFATNPPIAPIFPHFSASQNGP
ASGKIDLSAIPIAPVSTLRINRTVQKKRKLDAVLKLSENDLLDKDPTRNP
YYDPTIKNTISRSRPPREIKFKAPGEIADRAERKRETVLIQARREEYRKR
LAEGEGELPVLPPLSKDLRVKDASIPEWEWWDQPFIAEVSRVSVPADKDG
DVDMSNCFNVREDRITHYIHHPPPIIPAVPQKPPPVLPLMLTKKETKKLR
RQRRQEVQKEKQEMVALGLIPPPPPKVKLSNMRRVLLSEVTADPTKVEQQ
VRQQMEERKRKHELANEERKKSQEERREAAREKLINDKNAGLFAAVYRLG
AVHGGQKFKVSVNARQLSLNGALVLYDTFNVVVVEGGSKALRKFKKLMLR
RINWNESEKKNDSEISENNSGTLDREEGEHEKKGCVLLWEGRVAKPSFEQ
FQTMSLPKEVECRGMFRKRGVEHYWNLCAQASPAGNDGLGIKEIG*
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mRNA from alignment at ScGOVlb_24226:677266..679265-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8021.t1 ID=Gvermi8021.t1|Name=Gvermi8021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2000bp|location=Sequence derived from alignment at ScGOVlb_24226:677266..679265- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTTACGAAGCTGGCTCGATTCTGATCCATCTTACAGCCCTCGTTT
CAGTCGCCCTCTACACAGGGCATAGACGCTCGCTGCTGCACTCGTGATAT
CACATTATGCACAAACATTTTTCTCGCTAAAGCAATCAAGGCCCCGAGAG
AGATTTTCGGTAAGTCAGAAGCGAATATCTCGACGTCCCCGTCTCAGTGA
CTGCTCTTCTCCAGAGCTCTTCATATCGACACATAGTTAACTATGAGTGA
AACCACACGAAAACCGGCACAAAGAAGACGGCGAGGCCGCTCTCGTTTTA
CCGCTCTAGACGAAGTAACCGGAACAGTTGATACGGTACTGCCTAACCCT
GAACGCAACAAACAAAGCTCTGCAAATGGGACTCAAACAGTGTTGTCCAA
CCCAGCTGTTGCCGCGCTGCGAGCAGCCAATGCTTCTTTCCAGCACGCCC
AAGGTCATAGGACAGAGACAGTGGAGCACAAGGAACTGAATAATGTTCCA
AAATCGTCTTTGGGGAACGCCACTCAGCCCAAAAAGCGACGCAGGGGCCC
GCGTTTTGCAACCGCAGAACCGTCCATTGCCGAGAAACCAAAACAAACAT
TCGCAACAAACCCTCCAATAGCACCGATTTTTCCCCACTTCTCTGCCTCG
CAAAATGGTCCCGCTTCTGGCAAAATTGATCTTTCAGCAATCCCAATAGC
TCCTGTTTCCACATTACGCATTAACAGAACTGTGCAAAAGAAGCGCAAGT
TGGATGCTGTCTTGAAATTGTCTGAGAATGACCTGCTTGATAAGGATCCA
ACTCGAAATCCGTATTATGATCCTACTATTAAGAATACTATATCTCGATC
TCGACCTCCACGAGAAATCAAATTTAAAGCACCGGGAGAAATTGCGGACC
GAGCAGAACGAAAAAGAGAAACGGTCTTGATCCAAGCCCGGCGAGAAGAG
TATCGCAAGCGTCTTGCGGAAGGAGAAGGGGAACTTCCTGTACTTCCACC
GTTATCGAAGGATTTACGCGTAAAAGATGCATCAATACCCGAATGGGAAT
GGTGGGATCAACCGTTCATTGCCGAAGTTTCCAGAGTTTCTGTTCCAGCC
GATAAGGACGGCGATGTTGACATGAGCAATTGCTTTAATGTACGAGAAGA
TCGCATAACTCATTACATACACCACCCACCTCCGATTATTCCAGCTGTTC
CGCAGAAGCCGCCACCTGTGCTCCCCCTCATGCTTACAAAGAAAGAGACC
AAGAAACTCAGAAGGCAAAGGCGTCAAGAGGTTCAAAAAGAGAAACAAGA
AATGGTTGCTCTCGGGCTCATCCCTCCGCCACCCCCAAAAGTTAAGTTAA
GCAATATGAGGCGCGTGCTATTGTCAGAAGTTACCGCAGATCCAACAAAA
GTGGAGCAACAAGTCCGGCAGCAGATGGAAGAGAGGAAGCGAAAACATGA
ATTAGCAAATGAAGAAAGGAAAAAAAGTCAAGAGGAACGGCGAGAGGCTG
CTCGTGAAAAGCTGATTAACGATAAAAATGCAGGATTGTTTGCTGCCGTG
TATAGATTAGGCGCCGTACATGGAGGGCAGAAGTTCAAAGTGAGTGTGAA
TGCACGACAGCTCAGTTTAAACGGTGCTCTTGTCCTATACGATACTTTTA
ATGTTGTTGTGGTTGAGGGAGGAAGTAAGGCGCTTCGTAAGTTCAAAAAG
CTCATGTTAAGGCGTATAAACTGGAACGAAAGCGAGAAGAAGAATGATTC
CGAGATATCCGAGAACAATTCTGGCACTCTAGACCGCGAGGAAGGAGAGC
ATGAAAAGAAAGGCTGCGTTCTCCTGTGGGAGGGCCGAGTAGCGAAGCCA
AGTTTTGAGCAATTTCAGACAATGTCTCTTCCAAAGGAAGTGGAATGTCG
GGGTATGTTTCGGAAGCGAGGTGTTGAACACTACTGGAACTTGTGCGCTC
AGGCTAGTCCTGCTGGGAATGATGGCCTCGGTATTAAAGAAATTGGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:677266..679265-

>Gvermi8021.t1 ID=Gvermi8021.t1|Name=Gvermi8021.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1788bp|location=Sequence derived from alignment at ScGOVlb_24226:677266..679265- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCTTACGAAGCTGGCTCGATTCTGATCCATCTTACAGCCCTCGCCC
CGAGAGAGATTTTCGACGGCGAGGCCGCTCTCGTTTTACCGCTCTAGACG
AAGTAACCGGAACAGTTGATACGGTACTGCCTAACCCTGAACGCAACAAA
CAAAGCTCTGCAAATGGGACTCAAACAGTGTTGTCCAACCCAGCTGTTGC
CGCGCTGCGAGCAGCCAATGCTTCTTTCCAGCACGCCCAAGGTCATAGGA
CAGAGACAGTGGAGCACAAGGAACTGAATAATGTTCCAAAATCGTCTTTG
GGGAACGCCACTCAGCCCAAAAAGCGACGCAGGGGCCCGCGTTTTGCAAC
CGCAGAACCGTCCATTGCCGAGAAACCAAAACAAACATTCGCAACAAACC
CTCCAATAGCACCGATTTTTCCCCACTTCTCTGCCTCGCAAAATGGTCCC
GCTTCTGGCAAAATTGATCTTTCAGCAATCCCAATAGCTCCTGTTTCCAC
ATTACGCATTAACAGAACTGTGCAAAAGAAGCGCAAGTTGGATGCTGTCT
TGAAATTGTCTGAGAATGACCTGCTTGATAAGGATCCAACTCGAAATCCG
TATTATGATCCTACTATTAAGAATACTATATCTCGATCTCGACCTCCACG
AGAAATCAAATTTAAAGCACCGGGAGAAATTGCGGACCGAGCAGAACGAA
AAAGAGAAACGGTCTTGATCCAAGCCCGGCGAGAAGAGTATCGCAAGCGT
CTTGCGGAAGGAGAAGGGGAACTTCCTGTACTTCCACCGTTATCGAAGGA
TTTACGCGTAAAAGATGCATCAATACCCGAATGGGAATGGTGGGATCAAC
CGTTCATTGCCGAAGTTTCCAGAGTTTCTGTTCCAGCCGATAAGGACGGC
GATGTTGACATGAGCAATTGCTTTAATGTACGAGAAGATCGCATAACTCA
TTACATACACCACCCACCTCCGATTATTCCAGCTGTTCCGCAGAAGCCGC
CACCTGTGCTCCCCCTCATGCTTACAAAGAAAGAGACCAAGAAACTCAGA
AGGCAAAGGCGTCAAGAGGTTCAAAAAGAGAAACAAGAAATGGTTGCTCT
CGGGCTCATCCCTCCGCCACCCCCAAAAGTTAAGTTAAGCAATATGAGGC
GCGTGCTATTGTCAGAAGTTACCGCAGATCCAACAAAAGTGGAGCAACAA
GTCCGGCAGCAGATGGAAGAGAGGAAGCGAAAACATGAATTAGCAAATGA
AGAAAGGAAAAAAAGTCAAGAGGAACGGCGAGAGGCTGCTCGTGAAAAGC
TGATTAACGATAAAAATGCAGGATTGTTTGCTGCCGTGTATAGATTAGGC
GCCGTACATGGAGGGCAGAAGTTCAAAGTGAGTGTGAATGCACGACAGCT
CAGTTTAAACGGTGCTCTTGTCCTATACGATACTTTTAATGTTGTTGTGG
TTGAGGGAGGAAGTAAGGCGCTTCGTAAGTTCAAAAAGCTCATGTTAAGG
CGTATAAACTGGAACGAAAGCGAGAAGAAGAATGATTCCGAGATATCCGA
GAACAATTCTGGCACTCTAGACCGCGAGGAAGGAGAGCATGAAAAGAAAG
GCTGCGTTCTCCTGTGGGAGGGCCGAGTAGCGAAGCCAAGTTTTGAGCAA
TTTCAGACAATGTCTCTTCCAAAGGAAGTGGAATGTCGGGGTATGTTTCG
GAAGCGAGGTGTTGAACACTACTGGAACTTGTGCGCTCAGGCTAGTCCTG
CTGGGAATGATGGCCTCGGTATTAAAGAAATTGGGTAA
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