Gvermi8003.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8003.t1
Unique NameGvermi8003.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length608
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:606921..609180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX33144
PFAMsABC_tran,ABC_tran_Xtn
Max annot lvl2759|Eukaryota
Evalue2.44e-214
EggNOG OGsCOG0488@1|root,KOG0927@2759|Eukaryota
DescriptionATPase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8003Gvermi8003Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 606921..609180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1Gvermi8003.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 606921..609180 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1.stop1Gvermi8003.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 606921..606923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1.CDS1Gvermi8003.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 606921..607189 -
Gvermi8003.t1.CDS2Gvermi8003.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 607294..607537 -
Gvermi8003.t1.CDS3Gvermi8003.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 607664..607731 -
Gvermi8003.t1.CDS4Gvermi8003.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 607817..607823 -
Gvermi8003.t1.CDS5Gvermi8003.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 607945..609180 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1.exon1Gvermi8003.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 606921..607189 -
Gvermi8003.t1.exon2Gvermi8003.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 607294..607537 -
Gvermi8003.t1.exon3Gvermi8003.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 607664..607731 -
Gvermi8003.t1.exon4Gvermi8003.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 607817..607823 -
Gvermi8003.t1.exon5Gvermi8003.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 607945..609180 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1.intron1Gvermi8003.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 607190..607293 -
Gvermi8003.t1.intron2Gvermi8003.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 607538..607663 -
Gvermi8003.t1.intron3Gvermi8003.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 607732..607816 -
Gvermi8003.t1.intron4Gvermi8003.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 607824..607944 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8003.t1.start1Gvermi8003.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 609178..609180 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8003.t1 ID=Gvermi8003.t1|Name=Gvermi8003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=608bp
MGLNAKNMAKNKKKSGKKKGGSRNANTSQAQNGTPARAKANTIDTNRREY
IYQMVDVNKTLSNGKHILKNITLAYFPGVKIGVVGSNGSGKSSLLKIMAG
LDTEYDGIAAPQTGIKVGYLAQEPVLEEDTVEENIAKAVSESRGWLQRYE
QLGKMIGEKGLTDTEREKITGEWESLQNKIEASNAWELDRNIDRAREALR
CPPGDARIETLSGGEKRRVALCALLLTRPELLILDEPTNHLDALSILWLE
RFLETYKGTVICVTHDRFFLEALTDWILEIDEGKAFPYEGNYSTYLEKKA
KRMEEGEKVASSRQKLIRQELEWIRSSPKGQQAKSKARISRYEGLIEEDA
KTSKQRALDRIYIPPGPKLGDVVVEAEGVRKGFGENVLFENMSFSLPPGG
IIGVIGPNGAGKTTLLRMIMGEETPDAGVFKVGETVIPMYADQSRASVER
EKSVFETVSDGNDELQLGTRSVKSRAYLSWFNFKGGDQQKPVAALSGGEL
NRLALAQVVKGGGNVLLGDELTNDADAFLIRSLEEALLSFVGCAVIVSHD
IAFLNRVATHILAFEGDLVPGQVTFFEGNFSAYLEDKRRRFGETTPSRMK
FAKLPAL*
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spliced messenger RNA

>Gvermi8003.t1 ID=Gvermi8003.t1|Name=Gvermi8003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1824bp|location=Sequence derived from alignment at ScGOVlb_24226:606921..609180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTGAATGCCAAGAACATGGCCAAAAACAAAAAGAAAAGCGGCAA
GAAGAAGGGGGGCTCCCGAAATGCTAACACGTCCCAGGCTCAAAATGGCA
CCCCCGCGAGAGCAAAGGCGAACACAATTGACACCAATCGTCGAGAATAT
ATTTATCAAATGGTCGACGTTAACAAAACTCTAAGCAATGGAAAACACAT
TCTGAAGAACATTACGCTTGCGTATTTTCCTGGTGTCAAAATCGGAGTCG
TCGGCAGTAATGGTTCTGGAAAGAGTTCGTTGCTGAAAATCATGGCCGGT
CTCGATACAGAATACGACGGAATAGCCGCACCTCAAACTGGTATTAAGGT
TGGCTATCTCGCCCAAGAACCAGTTCTAGAGGAAGATACTGTAGAAGAAA
ACATAGCAAAGGCCGTTAGTGAGTCCAGAGGCTGGCTGCAGCGTTATGAA
CAGCTTGGAAAAATGATTGGTGAGAAGGGTTTAACTGATACCGAACGAGA
AAAGATTACCGGTGAGTGGGAATCATTGCAAAACAAGATTGAAGCCTCAA
ACGCCTGGGAACTTGATCGAAATATTGACAGAGCGCGAGAGGCATTGAGA
TGCCCTCCCGGTGATGCTCGCATCGAAACTCTGAGCGGCGGAGAAAAACG
TCGCGTTGCCTTGTGTGCACTTCTGCTAACGAGGCCAGAACTGTTGATAC
TTGATGAACCTACGAATCATTTGGATGCTCTTTCTATTCTATGGCTTGAG
AGATTTTTGGAAACCTATAAGGGGACTGTGATTTGCGTAACGCATGACCG
CTTTTTCCTTGAGGCTCTGACAGATTGGATATTAGAAATCGACGAAGGCA
AAGCCTTCCCATACGAAGGTAATTATTCGACTTACTTGGAAAAGAAGGCC
AAGAGAATGGAAGAAGGAGAGAAGGTGGCGTCAAGCCGACAGAAACTTAT
TCGACAAGAGCTTGAATGGATTCGGTCCAGTCCGAAGGGTCAGCAAGCCA
AGTCAAAGGCCCGAATATCTCGATACGAGGGTCTTATTGAAGAAGATGCC
AAAACAAGCAAGCAAAGAGCGCTTGATCGCATTTACATACCGCCAGGTCC
CAAGTTGGGCGATGTTGTTGTTGAAGCAGAAGGTGTTCGAAAGGGCTTTG
GGGAGAATGTTCTATTTGAAAATATGTCTTTCAGCTTGCCTCCAGGAGGC
ATTATTGGCGTCATAGGGCCCAACGGAGCTGGAAAGACTACACTGTTGCG
AATGATCATGGGTGAGGAAACTCCTGATGCTGGGGTATTTAAGGTCGGAG
AAACAGTTATCCCAATGTATGCAGATCAAAGCCGAGCTTCTGTAGAAAGA
GAAAAATCAGTCTTTGAGACGGTATCTGATGGGAATGATGAACTTCAACT
TGGAACTAGATCCGTGAAATCACGAGCATATCTGTCCTGGTTTAATTTCA
AAGGAGGTGATCAGCAAAAGCCCGTTGCTGCGCTCAGCGGTGGAGAACTT
AACCGATTGGCGTTGGCTCAGGTTGTGAAAGGCGGGGGTAATGTGCTGCT
TGGGGATGAGTTGACGAACGATGCCGACGCGTTCCTCATTCGAAGTTTGG
AAGAGGCATTGTTGTCGTTTGTTGGATGTGCCGTCATTGTGTCACATGAC
ATAGCGTTTCTAAACCGAGTAGCGACCCATATTCTCGCATTTGAAGGAGA
TCTTGTCCCTGGACAAGTGACTTTCTTTGAAGGCAACTTCTCAGCATATC
TTGAGGACAAACGTCGCCGGTTCGGAGAGACTACACCCTCGCGAATGAAG
TTTGCAAAGCTACCAGCTCTTTGA
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protein sequence of Gvermi8003.t1

>Gvermi8003.t1 ID=Gvermi8003.t1|Name=Gvermi8003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=608bp
MGLNAKNMAKNKKKSGKKKGGSRNANTSQAQNGTPARAKANTIDTNRREY
IYQMVDVNKTLSNGKHILKNITLAYFPGVKIGVVGSNGSGKSSLLKIMAG
LDTEYDGIAAPQTGIKVGYLAQEPVLEEDTVEENIAKAVSESRGWLQRYE
QLGKMIGEKGLTDTEREKITGEWESLQNKIEASNAWELDRNIDRAREALR
CPPGDARIETLSGGEKRRVALCALLLTRPELLILDEPTNHLDALSILWLE
RFLETYKGTVICVTHDRFFLEALTDWILEIDEGKAFPYEGNYSTYLEKKA
KRMEEGEKVASSRQKLIRQELEWIRSSPKGQQAKSKARISRYEGLIEEDA
KTSKQRALDRIYIPPGPKLGDVVVEAEGVRKGFGENVLFENMSFSLPPGG
IIGVIGPNGAGKTTLLRMIMGEETPDAGVFKVGETVIPMYADQSRASVER
EKSVFETVSDGNDELQLGTRSVKSRAYLSWFNFKGGDQQKPVAALSGGEL
NRLALAQVVKGGGNVLLGDELTNDADAFLIRSLEEALLSFVGCAVIVSHD
IAFLNRVATHILAFEGDLVPGQVTFFEGNFSAYLEDKRRRFGETTPSRMK
FAKLPAL*
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mRNA from alignment at ScGOVlb_24226:606921..609180-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8003.t1 ID=Gvermi8003.t1|Name=Gvermi8003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2260bp|location=Sequence derived from alignment at ScGOVlb_24226:606921..609180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACTGAATGCCAAGAACATGGCCAAAAACAAAAAGAAAAGCGGCAA
GAAGAAGGGGGGCTCCCGAAATGCTAACACGTCCCAGGCTCAAAATGGCA
CCCCCGCGAGAGCAAAGGCGAACACAATTGACACCAATCGTCGAGAATAT
ATTTATCAAATGGTCGACGTTAACAAAACTCTAAGCAATGGAAAACACAT
TCTGAAGAACATTACGCTTGCGTATTTTCCTGGTGTCAAAATCGGAGTCG
TCGGCAGTAATGGTTCTGGAAAGAGTTCGTTGCTGAAAATCATGGCCGGT
CTCGATACAGAATACGACGGAATAGCCGCACCTCAAACTGGTATTAAGGT
TGGCTATCTCGCCCAAGAACCAGTTCTAGAGGAAGATACTGTAGAAGAAA
ACATAGCAAAGGCCGTTAGTGAGTCCAGAGGCTGGCTGCAGCGTTATGAA
CAGCTTGGAAAAATGATTGGTGAGAAGGGTTTAACTGATACCGAACGAGA
AAAGATTACCGGTGAGTGGGAATCATTGCAAAACAAGATTGAAGCCTCAA
ACGCCTGGGAACTTGATCGAAATATTGACAGAGCGCGAGAGGCATTGAGA
TGCCCTCCCGGTGATGCTCGCATCGAAACTCTGAGCGGCGGAGAAAAACG
TCGCGTTGCCTTGTGTGCACTTCTGCTAACGAGGCCAGAACTGTTGATAC
TTGATGAACCTACGAATCATTTGGATGCTCTTTCTATTCTATGGCTTGAG
AGATTTTTGGAAACCTATAAGGGGACTGTGATTTGCGTAACGCATGACCG
CTTTTTCCTTGAGGCTCTGACAGATTGGATATTAGAAATCGACGAAGGCA
AAGCCTTCCCATACGAAGGTAATTATTCGACTTACTTGGAAAAGAAGGCC
AAGAGAATGGAAGAAGGAGAGAAGGTGGCGTCAAGCCGACAGAAACTTAT
TCGACAAGAGCTTGAATGGATTCGGTCCAGTCCGAAGGGTCAGCAAGCCA
AGTCAAAGGCCCGAATATCTCGATACGAGGGTCTTATTGAAGAAGATGCC
AAAACAAGCAAGCAAAGAGCGCTTGATCGCATTTACATACCGCCAGGTCC
CAAGTTGGGCGATGTTGTTGTTGAAGCAGAAGGTGTTCGAAAGGGCTTTG
GGGAGAATGTTCTATTTGAAAATATGTCTTTCAGCTTGCCTCCAGGAGGC
ATTATTGGCGTCATAGGGCCCAACGGAGCTGGAAAGGTAAGGTCAATTAT
TCGTCATTTGCTGTGTCTTGAGGTGCACGAAGAAATCCTGAAGTTGCTGA
CTGTGTTCCCATTGCTTTCTTTCCCTTTGCTTTTGTTCATCATCGTTCAA
AACAAAGACTACACGTAAGTTGAATGTTTGCATGCTACGAATATCATTGC
CGCGAAAATGGACGAAGTGTGGCAAAATTACTAACAGGTCAACGAACAGT
GTTGCGAATGATCATGGGTGAGGAAACTCCTGATGCTGGGGTATTTAAGG
TCGGAGAAACAGTTATCGTAAGTTCCCACAGGCCAGAAACTTTTATCTAC
ATTGATTCATGAAAACTTCTTTCAACCAACTGATTTTTATATGAAAACAC
TTGACTTTCTACGGAACTTTTGCATCTCCTTTCGCTTTTGAAGCCAATGT
ATGCAGATCAAAGCCGAGCTTCTGTAGAAAGAGAAAAATCAGTCTTTGAG
ACGGTATCTGATGGGAATGATGAACTTCAACTTGGAACTAGATCCGTGAA
ATCACGAGCATATCTGTCCTGGTTTAATTTCAAAGGAGGTGATCAGCAAA
AGCCCGTTGCTGCGCTCAGCGGTGGAGAACTTAACCGATTGGCGTTGGCT
CAGGTTGTGAAAGGCGGGGGTAATGTGCTGCTTGGGGGTACGTAGAGCCC
TCATTTTGGAGTTTCCGAGTAACAGCCAAGCCGCGATTCAAGAAGCGAAA
CTAACTTACTGTGGTTCACCTGATATCTATGTGTATCTCAGATGAGTTGA
CGAACGATGCCGACGCGTTCCTCATTCGAAGTTTGGAAGAGGCATTGTTG
TCGTTTGTTGGATGTGCCGTCATTGTGTCACATGACATAGCGTTTCTAAA
CCGAGTAGCGACCCATATTCTCGCATTTGAAGGAGATCTTGTCCCTGGAC
AAGTGACTTTCTTTGAAGGCAACTTCTCAGCATATCTTGAGGACAAACGT
CGCCGGTTCGGAGAGACTACACCCTCGCGAATGAAGTTTGCAAAGCTACC
AGCTCTTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:606921..609180-

>Gvermi8003.t1 ID=Gvermi8003.t1|Name=Gvermi8003.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1824bp|location=Sequence derived from alignment at ScGOVlb_24226:606921..609180- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGACTGAATGCCAAGAACATGGCCAAAAACAAAAAGAAAAGCGGCAA
GAAGAAGGGGGGCTCCCGAAATGCTAACACGTCCCAGGCTCAAAATGGCA
CCCCCGCGAGAGCAAAGGCGAACACAATTGACACCAATCGTCGAGAATAT
ATTTATCAAATGGTCGACGTTAACAAAACTCTAAGCAATGGAAAACACAT
TCTGAAGAACATTACGCTTGCGTATTTTCCTGGTGTCAAAATCGGAGTCG
TCGGCAGTAATGGTTCTGGAAAGAGTTCGTTGCTGAAAATCATGGCCGGT
CTCGATACAGAATACGACGGAATAGCCGCACCTCAAACTGGTATTAAGGT
TGGCTATCTCGCCCAAGAACCAGTTCTAGAGGAAGATACTGTAGAAGAAA
ACATAGCAAAGGCCGTTAGTGAGTCCAGAGGCTGGCTGCAGCGTTATGAA
CAGCTTGGAAAAATGATTGGTGAGAAGGGTTTAACTGATACCGAACGAGA
AAAGATTACCGGTGAGTGGGAATCATTGCAAAACAAGATTGAAGCCTCAA
ACGCCTGGGAACTTGATCGAAATATTGACAGAGCGCGAGAGGCATTGAGA
TGCCCTCCCGGTGATGCTCGCATCGAAACTCTGAGCGGCGGAGAAAAACG
TCGCGTTGCCTTGTGTGCACTTCTGCTAACGAGGCCAGAACTGTTGATAC
TTGATGAACCTACGAATCATTTGGATGCTCTTTCTATTCTATGGCTTGAG
AGATTTTTGGAAACCTATAAGGGGACTGTGATTTGCGTAACGCATGACCG
CTTTTTCCTTGAGGCTCTGACAGATTGGATATTAGAAATCGACGAAGGCA
AAGCCTTCCCATACGAAGGTAATTATTCGACTTACTTGGAAAAGAAGGCC
AAGAGAATGGAAGAAGGAGAGAAGGTGGCGTCAAGCCGACAGAAACTTAT
TCGACAAGAGCTTGAATGGATTCGGTCCAGTCCGAAGGGTCAGCAAGCCA
AGTCAAAGGCCCGAATATCTCGATACGAGGGTCTTATTGAAGAAGATGCC
AAAACAAGCAAGCAAAGAGCGCTTGATCGCATTTACATACCGCCAGGTCC
CAAGTTGGGCGATGTTGTTGTTGAAGCAGAAGGTGTTCGAAAGGGCTTTG
GGGAGAATGTTCTATTTGAAAATATGTCTTTCAGCTTGCCTCCAGGAGGC
ATTATTGGCGTCATAGGGCCCAACGGAGCTGGAAAGACTACACTGTTGCG
AATGATCATGGGTGAGGAAACTCCTGATGCTGGGGTATTTAAGGTCGGAG
AAACAGTTATCCCAATGTATGCAGATCAAAGCCGAGCTTCTGTAGAAAGA
GAAAAATCAGTCTTTGAGACGGTATCTGATGGGAATGATGAACTTCAACT
TGGAACTAGATCCGTGAAATCACGAGCATATCTGTCCTGGTTTAATTTCA
AAGGAGGTGATCAGCAAAAGCCCGTTGCTGCGCTCAGCGGTGGAGAACTT
AACCGATTGGCGTTGGCTCAGGTTGTGAAAGGCGGGGGTAATGTGCTGCT
TGGGGATGAGTTGACGAACGATGCCGACGCGTTCCTCATTCGAAGTTTGG
AAGAGGCATTGTTGTCGTTTGTTGGATGTGCCGTCATTGTGTCACATGAC
ATAGCGTTTCTAAACCGAGTAGCGACCCATATTCTCGCATTTGAAGGAGA
TCTTGTCCCTGGACAAGTGACTTTCTTTGAAGGCAACTTCTCAGCATATC
TTGAGGACAAACGTCGCCGGTTCGGAGAGACTACACCCTCGCGAATGAAG
TTTGCAAAGCTACCAGCTCTTTGA
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