Gvermi8008.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8008.t1
Unique Name	Gvermi8008.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:655170..656267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9365.XP_007536609.1
Preferred name	CHID1
PFAMs	Glyco_hydro_18
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K17525
GOs	GO:0000323,GO:0001817,GO:0001818,GO:0002576,GO:0003674,GO:0003824,GO:0004553,GO:0004568,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005775,GO:0005794,GO:0005802,GO:0006022,GO:0006026,GO:0006030,GO:0006032,GO:0006040,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006954,GO:0008061,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0016192,GO:0016787,GO:0016798,GO:0017144,GO:0030246,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031982,GO:0031984,GO:0032101,GO:0032102,GO:0032940,GO:0042737,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044421,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046348,GO:0046903,GO:0048519,GO:0048583,GO:0048585,GO:0050727,GO:0050728,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0065007,GO:0070013,GO:0070492,GO:0071704,GO:0080134,GO:0097367,GO:0097708,GO:0098791,GO:1900015,GO:1900016,GO:1901071,GO:1901072,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Evalue	3.39e-44
EggNOG OGs	KOG2091@1\|root,KOG2091@2759\|Eukaryota,38HBY@33154\|Opisthokonta,3BGA0@33208\|Metazoa,3CRXI@33213\|Bilateria,481IA@7711\|Chordata,48Z8N@7742\|Vertebrata,3J6X7@40674\|Mammalia
Description	chitin binding
COG category	G
CAZy	GH18
BRITE	ko00000,ko04091

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8008	Gvermi8008	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 655170..656267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8008.t1.start1	Gvermi8008.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 655170..655172 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8008.t1.CDS1	Gvermi8008.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 655170..656267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8008.t1.exon1	Gvermi8008.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 655170..656267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8008.t1.stop1	Gvermi8008.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 656265..656267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8008.t1	Gvermi8008.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 655170..656267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:655170..656267+
coding sequence from alignment at ScGOVlb_24226:655170..656267+

mRNA sequence

>Gvermi8008.t1 ID=Gvermi8008.t1|Name=Gvermi8008.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp
METSSGLVFALFTIVICVGSFGVAEVVTPIISSLKYSDIVGTHALTEAAP
TRKFPHLQVFGFVTPWNGEGKVVSLSESRKGRLDVAVPVSWQMHPDGLSG
GGDFGVEYYRNLSEHGTRVFPRILFEKWDREQFKSLCRDPSRAVEAIVDL
CTSYKFEGVVIEVFQALLGTGMLVYHNRDALKLTRDIGDRLRKAQLKTVL
VILPYDKEVRQHGISCATLQDLGTGYSYVMAMTYDYSTPGSAAGPIAPIG
WVRRVAKYLSQECELWGKVLIGVNLYGVDFCNGGEDRHVIGREVVELLEQ
HKPEMMWWEEFGEHAFGYRDAHDHMVVYPTRESIRLRMEVADAMGCGGVA
AWELGQGLRHFFEEM*

spliced messenger RNA

>Gvermi8008.t1 ID=Gvermi8008.t1|Name=Gvermi8008.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_24226:655170..656267+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGACATCCAGCGGTCTTGTTTTTGCGCTGTTTACGATCGTCATATG
TGTGGGCAGTTTTGGGGTGGCAGAGGTAGTGACGCCCATCATATCGTCCC
TGAAGTACAGCGACATCGTGGGAACTCATGCTCTGACAGAAGCGGCACCG
ACGCGCAAGTTTCCTCATCTGCAAGTTTTCGGGTTTGTAACTCCTTGGAA
TGGGGAGGGAAAGGTGGTGTCGCTGTCTGAGTCACGAAAAGGGCGGCTGG
ATGTGGCTGTGCCGGTGTCGTGGCAAATGCATCCCGATGGGTTATCTGGC
GGGGGTGATTTTGGGGTGGAGTACTATCGGAATCTGTCGGAGCATGGCAC
GCGCGTGTTTCCTCGCATTCTGTTCGAAAAGTGGGACAGAGAGCAGTTTA
AATCGCTGTGCCGCGATCCGAGTAGGGCTGTGGAGGCCATCGTCGACTTG
TGCACGTCTTACAAATTTGAAGGGGTAGTGATAGAGGTATTTCAAGCTCT
GCTTGGCACCGGTATGTTGGTTTACCACAATCGGGACGCGCTCAAACTGA
CGAGAGATATTGGGGACAGGTTGCGGAAAGCGCAGCTCAAGACGGTGCTT
GTGATATTGCCGTATGATAAAGAGGTGCGGCAGCATGGCATAAGCTGCGC
AACGTTACAAGATTTGGGCACGGGATATTCGTACGTGATGGCGATGACGT
ACGACTACAGCACGCCGGGGTCCGCAGCGGGCCCGATTGCTCCTATTGGG
TGGGTACGACGAGTTGCCAAGTATCTGTCTCAGGAGTGCGAACTGTGGGG
CAAGGTGTTGATAGGCGTGAACTTGTACGGCGTGGACTTTTGCAACGGTG
GGGAAGACCGGCACGTGATAGGGCGCGAGGTAGTGGAGCTGCTGGAGCAA
CACAAGCCGGAGATGATGTGGTGGGAGGAGTTTGGAGAGCATGCGTTTGG
CTACCGCGACGCGCACGACCACATGGTCGTGTACCCCACGCGCGAGAGCA
TCCGACTGCGGATGGAGGTGGCGGACGCGATGGGGTGCGGGGGGGTGGCG
GCGTGGGAGCTGGGGCAGGGCCTGCGTCACTTTTTCGAGGAGATGTGA

protein sequence of Gvermi8008.t1

>Gvermi8008.t1 ID=Gvermi8008.t1|Name=Gvermi8008.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=366bp
METSSGLVFALFTIVICVGSFGVAEVVTPIISSLKYSDIVGTHALTEAAP
TRKFPHLQVFGFVTPWNGEGKVVSLSESRKGRLDVAVPVSWQMHPDGLSG
GGDFGVEYYRNLSEHGTRVFPRILFEKWDREQFKSLCRDPSRAVEAIVDL
CTSYKFEGVVIEVFQALLGTGMLVYHNRDALKLTRDIGDRLRKAQLKTVL
VILPYDKEVRQHGISCATLQDLGTGYSYVMAMTYDYSTPGSAAGPIAPIG
WVRRVAKYLSQECELWGKVLIGVNLYGVDFCNGGEDRHVIGREVVELLEQ
HKPEMMWWEEFGEHAFGYRDAHDHMVVYPTRESIRLRMEVADAMGCGGVA
AWELGQGLRHFFEEM*

mRNA from alignment at ScGOVlb_24226:655170..656267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8008.t1 ID=Gvermi8008.t1|Name=Gvermi8008.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at ScGOVlb_24226:655170..656267+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGACATCCAGCGGTCTTGTTTTTGCGCTGTTTACGATCGTCATATG
TGTGGGCAGTTTTGGGGTGGCAGAGGTAGTGACGCCCATCATATCGTCCC
TGAAGTACAGCGACATCGTGGGAACTCATGCTCTGACAGAAGCGGCACCG
ACGCGCAAGTTTCCTCATCTGCAAGTTTTCGGGTTTGTAACTCCTTGGAA
TGGGGAGGGAAAGGTGGTGTCGCTGTCTGAGTCACGAAAAGGGCGGCTGG
ATGTGGCTGTGCCGGTGTCGTGGCAAATGCATCCCGATGGGTTATCTGGC
GGGGGTGATTTTGGGGTGGAGTACTATCGGAATCTGTCGGAGCATGGCAC
GCGCGTGTTTCCTCGCATTCTGTTCGAAAAGTGGGACAGAGAGCAGTTTA
AATCGCTGTGCCGCGATCCGAGTAGGGCTGTGGAGGCCATCGTCGACTTG
TGCACGTCTTACAAATTTGAAGGGGTAGTGATAGAGGTATTTCAAGCTCT
GCTTGGCACCGGTATGTTGGTTTACCACAATCGGGACGCGCTCAAACTGA
CGAGAGATATTGGGGACAGGTTGCGGAAAGCGCAGCTCAAGACGGTGCTT
GTGATATTGCCGTATGATAAAGAGGTGCGGCAGCATGGCATAAGCTGCGC
AACGTTACAAGATTTGGGCACGGGATATTCGTACGTGATGGCGATGACGT
ACGACTACAGCACGCCGGGGTCCGCAGCGGGCCCGATTGCTCCTATTGGG
TGGGTACGACGAGTTGCCAAGTATCTGTCTCAGGAGTGCGAACTGTGGGG
CAAGGTGTTGATAGGCGTGAACTTGTACGGCGTGGACTTTTGCAACGGTG
GGGAAGACCGGCACGTGATAGGGCGCGAGGTAGTGGAGCTGCTGGAGCAA
CACAAGCCGGAGATGATGTGGTGGGAGGAGTTTGGAGAGCATGCGTTTGG
CTACCGCGACGCGCACGACCACATGGTCGTGTACCCCACGCGCGAGAGCA
TCCGACTGCGGATGGAGGTGGCGGACGCGATGGGGTGCGGGGGGGTGGCG
GCGTGGGAGCTGGGGCAGGGCCTGCGTCACTTTTTCGAGGAGATGTGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:655170..656267+

>Gvermi8008.t1 ID=Gvermi8008.t1|Name=Gvermi8008.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1098bp|location=Sequence derived from alignment at ScGOVlb_24226:655170..656267+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGACATCCAGCGGTCTTGTTTTTGCGCTGTTTACGATCGTCATATG
TGTGGGCAGTTTTGGGGTGGCAGAGGTAGTGACGCCCATCATATCGTCCC
TGAAGTACAGCGACATCGTGGGAACTCATGCTCTGACAGAAGCGGCACCG
ACGCGCAAGTTTCCTCATCTGCAAGTTTTCGGGTTTGTAACTCCTTGGAA
TGGGGAGGGAAAGGTGGTGTCGCTGTCTGAGTCACGAAAAGGGCGGCTGG
ATGTGGCTGTGCCGGTGTCGTGGCAAATGCATCCCGATGGGTTATCTGGC
GGGGGTGATTTTGGGGTGGAGTACTATCGGAATCTGTCGGAGCATGGCAC
GCGCGTGTTTCCTCGCATTCTGTTCGAAAAGTGGGACAGAGAGCAGTTTA
AATCGCTGTGCCGCGATCCGAGTAGGGCTGTGGAGGCCATCGTCGACTTG
TGCACGTCTTACAAATTTGAAGGGGTAGTGATAGAGGTATTTCAAGCTCT
GCTTGGCACCGGTATGTTGGTTTACCACAATCGGGACGCGCTCAAACTGA
CGAGAGATATTGGGGACAGGTTGCGGAAAGCGCAGCTCAAGACGGTGCTT
GTGATATTGCCGTATGATAAAGAGGTGCGGCAGCATGGCATAAGCTGCGC
AACGTTACAAGATTTGGGCACGGGATATTCGTACGTGATGGCGATGACGT
ACGACTACAGCACGCCGGGGTCCGCAGCGGGCCCGATTGCTCCTATTGGG
TGGGTACGACGAGTTGCCAAGTATCTGTCTCAGGAGTGCGAACTGTGGGG
CAAGGTGTTGATAGGCGTGAACTTGTACGGCGTGGACTTTTGCAACGGTG
GGGAAGACCGGCACGTGATAGGGCGCGAGGTAGTGGAGCTGCTGGAGCAA
CACAAGCCGGAGATGATGTGGTGGGAGGAGTTTGGAGAGCATGCGTTTGG
CTACCGCGACGCGCACGACCACATGGTCGTGTACCCCACGCGCGAGAGCA
TCCGACTGCGGATGGAGGTGGCGGACGCGATGGGGTGCGGGGGGGTGGCG
GCGTGGGAGCTGGGGCAGGGCCTGCGTCACTTTTTCGAGGAGATGTGA