Gvermi8025.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8025.t1
Unique Name	Gvermi8025.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	652

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:686039..687994 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703747.1
Preferred name	SUCO
PFAMs	Sad1_UNC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01528
KEGG Pathway	ko04072,ko04144,ko04721,ko04961,ko05100,map04072,map04144,map04721,map04961,map05100
GOs	GO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005791,GO:0005886,GO:0006457,GO:0006996,GO:0006997,GO:0007049,GO:0007154,GO:0007267,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010712,GO:0010714,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0019222,GO:0022402,GO:0023052,GO:0030154,GO:0030176,GO:0030278,GO:0030587,GO:0031154,GO:0031224,GO:0031225,GO:0031226,GO:0031227,GO:0031967,GO:0031975,GO:0031984,GO:0032502,GO:0032965,GO:0032967,GO:0034103,GO:0034975,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043621,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045168,GO:0045595,GO:0045597,GO:0045667,GO:0045669,GO:0045778,GO:0046331,GO:0046658,GO:0046850,GO:0048518,GO:0048522,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0051301,GO:0051703,GO:0051704,GO:0061640,GO:0065007,GO:0071840,GO:0071944,GO:0090702,GO:0098827,GO:0099120,GO:1903047
Evalue	3.99e-84
EggNOG OGs	KOG1396@1\|root,KOG1396@2759\|Eukaryota
EC	3.6.5.5
Description	positive regulation of collagen biosynthetic process
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8025	Gvermi8025	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 686039..687994 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8025.t1.start1	Gvermi8025.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 686039..686041 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8025.t1.CDS1	Gvermi8025.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 686039..687994 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8025.t1.exon1	Gvermi8025.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 686039..687994 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8025.t1.stop1	Gvermi8025.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 687992..687994 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8025.t1	Gvermi8025.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 686039..687994 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:686039..687994+
coding sequence from alignment at ScGOVlb_24226:686039..687994+

mRNA sequence

>Gvermi8025.t1 ID=Gvermi8025.t1|Name=Gvermi8025.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=652bp
MNAIQSASFFFTPTTLMPLIISDFAIPLSLSTVPIAVGKIAYVLLLIPGG
IVVDRHGPRICVMLAIAGLALVMTVYATLISNFSSLLLAHVVMAIFASVS
GVPIYSIFIAQWFHAGIGLAMGLVLAGYSAAGTIAPLVLGPIAAEMGWRV
AMGCVCAMLWFVGLPITFFFLKEPHHVQSARHFVPHDQSPAFSQPAPPMP
LLLPDRPLVSQFSSTFAGFALSYILLQYCFGCFGENIMFYLTIDRSLSLS
FASLFFSALNLASFSAKLVGGHLGDRFDRFHVAAVASALAAVGITFLFNL
GAGLDHHYLPHLTESVFPVLIFAVLFGFGYGATFNSLYALTPIVFGKQNL
GRTQSTLFGLGLCGNAVGSVLTGVLRSKYGSYQLPFFLTALVCVVNFFVF
NFTRLSLGGSVSAMKILAEQRSAVMCDSEEPEPSTSPSYQSSFLTSSASF
SRIPPVNSSAPIAKGSPFSAADRFDERIMPPTMYDSIEMLPAARGTIPRS
YSRHEGTGMLPERGFPIVRDWSSLSLRSQLQGALAASPFQGSVPYGANLH
RSSTFEAMIDSGILSASMEAVGFLGANEATLRIASSTNRSPAPTPPIRST
PGLSPNTRQLPFASPPSVSSGSSAKQAALLSLPPLSATTRPTPPDKSSEP
P*

spliced messenger RNA

>Gvermi8025.t1 ID=Gvermi8025.t1|Name=Gvermi8025.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at ScGOVlb_24226:686039..687994+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaacgccatccagtccgccagcttcttcttcacccccaccacgcTCAT
GCCGCTCATCATTTCCGACTTTGCCATCCCCCTCTCGCTCTCTACCGTCC
CTATCGCCGTCGGCAAGATTGCCTACGTCTTGCTCCTTATCCCCGGCGGA
ATCGTCGTCGACCGCCACGGCCCGCGCATTTGCGTGATGCTCGCCATCGC
CGGCCTGGCGCTCGTCATGACCGTGTACGCCACTCTCATCTCAAACTTTT
CGTCCCTCTTGCTCGCCCACGTCGTCATGGCCATCTTCGCCAGCGTCAGC
GGCGTGCCTATCTACTCCATTTTCATCGCCCAGTGGTTCCACGCCGGCAT
CGGCTTGGCCATGGGGCTCGTGCTCGCGGGCTACTCGGCCGCCGGCACCA
TTGCCCCGCTCGTTCTGGGTCCCATCGCCGCCGAGATGGGCTGGCGCGTC
GCCATGGGCTGCGTATGCGCCATGCTTTGGTTCGTCGGGCTCCCCATCAC
CTTCTTCTTTCTCAAGGAGCCCCACCACGTGCAATCCGCCCGTCACTTTG
TTCCTCACGACCAGTCTCCTGCATTTTCTCAGCCCGCCCCACCCATGCCC
TTGCTCCTTCCCGACCGCCCGCTCGTCAGTCAATTCTCGTCTACCTTTGC
CGGCTTTGCTCTCTCGTACATCCTACTGCAGTACTGCTTTGGTTGCTTCG
GCGAGAACATCATGTTTTATCTAACCATTGACCGCTCCTTGTCGCTCTCT
TTTGCCTCCCTGTTCTTCAGCGCCCTCAACCTTGCCTCCTTCTCCGCCAA
GTTGGTCGGCGGCCACCTCGGCGATCGCTTTGATCGCTTCCACGTTGCCG
CTGTCGCCAGTGCGCTCGCCGCCGTAGGCATCACCTTTCTTTTCAACCTG
GGTGCGGGCCTGGATCACCACTACTTGCCCCACCTTACAGAATCCGTTTT
TCCTGTCTTGATCTTTGCTGTTTTATTTGGCTTTGGATACGGTGCCACTT
TCAACAGCCTCTACGCGCTCACGCCCATCGTTTTCGGAAAACAGAACCTC
GGTCGAACTCAGAGCACTTTGTTCGGACTTGGCCTCTGTGGAAATGCTGT
CGGGTCTGTCCTCACCGGCGTCTTGCGCTCCAAGTATGGCTCGTATCAGC
TCCCGTTCTTCCTCACTGCGCTTGTGTGCGTTGTCAACTTTTTTGTCTTC
AACTTTACTCGCTTGTCTCTGGGCGGAAGCGTGTCTGCTATGAAAATATT
GGCGGAACAGCGTTCTGCCGTTATGTGCGATAGTGAGGAACCTGAACCAT
CTACATCTCCATCGTACCAGTCATCATTCCTCACTTCGTCAGCCAGCTTC
TCAAGAATACCTCCTGTGAATAGCAGTGCCCCGATTGCCAAGGGCAGTCC
ATTCTCTGCCGCGGACCGTTTCGATGAGCGAATAATGCCGCCTACCATGT
ACGATTCTATTGAAATGCTCCCTGCCGCGCGTGGCACGATTCCTCGCAGT
TATAGTCGCCATGAAGGCACCGGGATGCTCCCCGAGCGTGGGTTCCCCAT
TGTGCGAGACTGGTCTAGTTTATCCCTACGGTCGCAATTGCAAGGTGCGC
TTGCCGCTTCACCTTTCCAGGGCTCTGTACCATATGGCGCCAATCTTCAC
AGATCCTCTACATTCGAAGCCATGATTGACTCCGGGATTCTTTCGGCCAG
TATGGAAGCCGTCGGTTTCCTGGGTGCGAATGAGGCGACACTACGAATCG
CCTCCTCCACCAACAGAAGCCCAGCTCCAACTCCACCAATACGAAGCACA
CCTGGTCTGTCCCCGAACACTAGACAATTACCTTTTGCTTCACCGCCCTC
GGTTTCTAGCGGATCTTCTGCAAAACAAGCTGCGCTGCTTTCTCTGCCCC
CGCTCTCTGCCACTACACGTCCGACTCCGCCAGATAAGTCATCTGAACCC
CCATGA

protein sequence of Gvermi8025.t1

>Gvermi8025.t1 ID=Gvermi8025.t1|Name=Gvermi8025.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=652bp
MNAIQSASFFFTPTTLMPLIISDFAIPLSLSTVPIAVGKIAYVLLLIPGG
IVVDRHGPRICVMLAIAGLALVMTVYATLISNFSSLLLAHVVMAIFASVS
GVPIYSIFIAQWFHAGIGLAMGLVLAGYSAAGTIAPLVLGPIAAEMGWRV
AMGCVCAMLWFVGLPITFFFLKEPHHVQSARHFVPHDQSPAFSQPAPPMP
LLLPDRPLVSQFSSTFAGFALSYILLQYCFGCFGENIMFYLTIDRSLSLS
FASLFFSALNLASFSAKLVGGHLGDRFDRFHVAAVASALAAVGITFLFNL
GAGLDHHYLPHLTESVFPVLIFAVLFGFGYGATFNSLYALTPIVFGKQNL
GRTQSTLFGLGLCGNAVGSVLTGVLRSKYGSYQLPFFLTALVCVVNFFVF
NFTRLSLGGSVSAMKILAEQRSAVMCDSEEPEPSTSPSYQSSFLTSSASF
SRIPPVNSSAPIAKGSPFSAADRFDERIMPPTMYDSIEMLPAARGTIPRS
YSRHEGTGMLPERGFPIVRDWSSLSLRSQLQGALAASPFQGSVPYGANLH
RSSTFEAMIDSGILSASMEAVGFLGANEATLRIASSTNRSPAPTPPIRST
PGLSPNTRQLPFASPPSVSSGSSAKQAALLSLPPLSATTRPTPPDKSSEP
P*

mRNA from alignment at ScGOVlb_24226:686039..687994+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8025.t1 ID=Gvermi8025.t1|Name=Gvermi8025.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at ScGOVlb_24226:686039..687994+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaacgccatccagtccgccagcttcttcttcacccccaccacgcTCAT
GCCGCTCATCATTTCCGACTTTGCCATCCCCCTCTCGCTCTCTACCGTCC
CTATCGCCGTCGGCAAGATTGCCTACGTCTTGCTCCTTATCCCCGGCGGA
ATCGTCGTCGACCGCCACGGCCCGCGCATTTGCGTGATGCTCGCCATCGC
CGGCCTGGCGCTCGTCATGACCGTGTACGCCACTCTCATCTCAAACTTTT
CGTCCCTCTTGCTCGCCCACGTCGTCATGGCCATCTTCGCCAGCGTCAGC
GGCGTGCCTATCTACTCCATTTTCATCGCCCAGTGGTTCCACGCCGGCAT
CGGCTTGGCCATGGGGCTCGTGCTCGCGGGCTACTCGGCCGCCGGCACCA
TTGCCCCGCTCGTTCTGGGTCCCATCGCCGCCGAGATGGGCTGGCGCGTC
GCCATGGGCTGCGTATGCGCCATGCTTTGGTTCGTCGGGCTCCCCATCAC
CTTCTTCTTTCTCAAGGAGCCCCACCACGTGCAATCCGCCCGTCACTTTG
TTCCTCACGACCAGTCTCCTGCATTTTCTCAGCCCGCCCCACCCATGCCC
TTGCTCCTTCCCGACCGCCCGCTCGTCAGTCAATTCTCGTCTACCTTTGC
CGGCTTTGCTCTCTCGTACATCCTACTGCAGTACTGCTTTGGTTGCTTCG
GCGAGAACATCATGTTTTATCTAACCATTGACCGCTCCTTGTCGCTCTCT
TTTGCCTCCCTGTTCTTCAGCGCCCTCAACCTTGCCTCCTTCTCCGCCAA
GTTGGTCGGCGGCCACCTCGGCGATCGCTTTGATCGCTTCCACGTTGCCG
CTGTCGCCAGTGCGCTCGCCGCCGTAGGCATCACCTTTCTTTTCAACCTG
GGTGCGGGCCTGGATCACCACTACTTGCCCCACCTTACAGAATCCGTTTT
TCCTGTCTTGATCTTTGCTGTTTTATTTGGCTTTGGATACGGTGCCACTT
TCAACAGCCTCTACGCGCTCACGCCCATCGTTTTCGGAAAACAGAACCTC
GGTCGAACTCAGAGCACTTTGTTCGGACTTGGCCTCTGTGGAAATGCTGT
CGGGTCTGTCCTCACCGGCGTCTTGCGCTCCAAGTATGGCTCGTATCAGC
TCCCGTTCTTCCTCACTGCGCTTGTGTGCGTTGTCAACTTTTTTGTCTTC
AACTTTACTCGCTTGTCTCTGGGCGGAAGCGTGTCTGCTATGAAAATATT
GGCGGAACAGCGTTCTGCCGTTATGTGCGATAGTGAGGAACCTGAACCAT
CTACATCTCCATCGTACCAGTCATCATTCCTCACTTCGTCAGCCAGCTTC
TCAAGAATACCTCCTGTGAATAGCAGTGCCCCGATTGCCAAGGGCAGTCC
ATTCTCTGCCGCGGACCGTTTCGATGAGCGAATAATGCCGCCTACCATGT
ACGATTCTATTGAAATGCTCCCTGCCGCGCGTGGCACGATTCCTCGCAGT
TATAGTCGCCATGAAGGCACCGGGATGCTCCCCGAGCGTGGGTTCCCCAT
TGTGCGAGACTGGTCTAGTTTATCCCTACGGTCGCAATTGCAAGGTGCGC
TTGCCGCTTCACCTTTCCAGGGCTCTGTACCATATGGCGCCAATCTTCAC
AGATCCTCTACATTCGAAGCCATGATTGACTCCGGGATTCTTTCGGCCAG
TATGGAAGCCGTCGGTTTCCTGGGTGCGAATGAGGCGACACTACGAATCG
CCTCCTCCACCAACAGAAGCCCAGCTCCAACTCCACCAATACGAAGCACA
CCTGGTCTGTCCCCGAACACTAGACAATTACCTTTTGCTTCACCGCCCTC
GGTTTCTAGCGGATCTTCTGCAAAACAAGCTGCGCTGCTTTCTCTGCCCC
CGCTCTCTGCCACTACACGTCCGACTCCGCCAGATAAGTCATCTGAACCC
CCATGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:686039..687994+

>Gvermi8025.t1 ID=Gvermi8025.t1|Name=Gvermi8025.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1956bp|location=Sequence derived from alignment at ScGOVlb_24226:686039..687994+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaacgccatccagtccgccagcttcttcttcacccccaccacgcTCAT
GCCGCTCATCATTTCCGACTTTGCCATCCCCCTCTCGCTCTCTACCGTCC
CTATCGCCGTCGGCAAGATTGCCTACGTCTTGCTCCTTATCCCCGGCGGA
ATCGTCGTCGACCGCCACGGCCCGCGCATTTGCGTGATGCTCGCCATCGC
CGGCCTGGCGCTCGTCATGACCGTGTACGCCACTCTCATCTCAAACTTTT
CGTCCCTCTTGCTCGCCCACGTCGTCATGGCCATCTTCGCCAGCGTCAGC
GGCGTGCCTATCTACTCCATTTTCATCGCCCAGTGGTTCCACGCCGGCAT
CGGCTTGGCCATGGGGCTCGTGCTCGCGGGCTACTCGGCCGCCGGCACCA
TTGCCCCGCTCGTTCTGGGTCCCATCGCCGCCGAGATGGGCTGGCGCGTC
GCCATGGGCTGCGTATGCGCCATGCTTTGGTTCGTCGGGCTCCCCATCAC
CTTCTTCTTTCTCAAGGAGCCCCACCACGTGCAATCCGCCCGTCACTTTG
TTCCTCACGACCAGTCTCCTGCATTTTCTCAGCCCGCCCCACCCATGCCC
TTGCTCCTTCCCGACCGCCCGCTCGTCAGTCAATTCTCGTCTACCTTTGC
CGGCTTTGCTCTCTCGTACATCCTACTGCAGTACTGCTTTGGTTGCTTCG
GCGAGAACATCATGTTTTATCTAACCATTGACCGCTCCTTGTCGCTCTCT
TTTGCCTCCCTGTTCTTCAGCGCCCTCAACCTTGCCTCCTTCTCCGCCAA
GTTGGTCGGCGGCCACCTCGGCGATCGCTTTGATCGCTTCCACGTTGCCG
CTGTCGCCAGTGCGCTCGCCGCCGTAGGCATCACCTTTCTTTTCAACCTG
GGTGCGGGCCTGGATCACCACTACTTGCCCCACCTTACAGAATCCGTTTT
TCCTGTCTTGATCTTTGCTGTTTTATTTGGCTTTGGATACGGTGCCACTT
TCAACAGCCTCTACGCGCTCACGCCCATCGTTTTCGGAAAACAGAACCTC
GGTCGAACTCAGAGCACTTTGTTCGGACTTGGCCTCTGTGGAAATGCTGT
CGGGTCTGTCCTCACCGGCGTCTTGCGCTCCAAGTATGGCTCGTATCAGC
TCCCGTTCTTCCTCACTGCGCTTGTGTGCGTTGTCAACTTTTTTGTCTTC
AACTTTACTCGCTTGTCTCTGGGCGGAAGCGTGTCTGCTATGAAAATATT
GGCGGAACAGCGTTCTGCCGTTATGTGCGATAGTGAGGAACCTGAACCAT
CTACATCTCCATCGTACCAGTCATCATTCCTCACTTCGTCAGCCAGCTTC
TCAAGAATACCTCCTGTGAATAGCAGTGCCCCGATTGCCAAGGGCAGTCC
ATTCTCTGCCGCGGACCGTTTCGATGAGCGAATAATGCCGCCTACCATGT
ACGATTCTATTGAAATGCTCCCTGCCGCGCGTGGCACGATTCCTCGCAGT
TATAGTCGCCATGAAGGCACCGGGATGCTCCCCGAGCGTGGGTTCCCCAT
TGTGCGAGACTGGTCTAGTTTATCCCTACGGTCGCAATTGCAAGGTGCGC
TTGCCGCTTCACCTTTCCAGGGCTCTGTACCATATGGCGCCAATCTTCAC
AGATCCTCTACATTCGAAGCCATGATTGACTCCGGGATTCTTTCGGCCAG
TATGGAAGCCGTCGGTTTCCTGGGTGCGAATGAGGCGACACTACGAATCG
CCTCCTCCACCAACAGAAGCCCAGCTCCAACTCCACCAATACGAAGCACA
CCTGGTCTGTCCCCGAACACTAGACAATTACCTTTTGCTTCACCGCCCTC
GGTTTCTAGCGGATCTTCTGCAAAACAAGCTGCGCTGCTTTCTCTGCCCC
CGCTCTCTGCCACTACACGTCCGACTCCGCCAGATAAGTCATCTGAACCC
CCATGA