Gvermi8029.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8029.t1
Unique Name	Gvermi8029.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	364

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:755663..756754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4098.XP_009622404.1
PFAMs	PfkB
Max annot lvl	35493\|Streptophyta
Evalue	1.21e-23
EggNOG OGs	COG0524@1\|root,KOG2855@2759\|Eukaryota,37M1C@33090\|Viridiplantae,3G7V5@35493\|Streptophyta,44IPN@71274\|asterids
Description	pfkB family carbohydrate kinase
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8029	Gvermi8029	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 755663..756754 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8029.t1.start1	Gvermi8029.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 755663..755665 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8029.t1.CDS1	Gvermi8029.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 755663..756754 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8029.t1.exon1	Gvermi8029.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 755663..756754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8029.t1.stop1	Gvermi8029.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 756752..756754 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8029.t1	Gvermi8029.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 755663..756754 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:755663..756754+
coding sequence from alignment at ScGOVlb_24226:755663..756754+

mRNA sequence

>Gvermi8029.t1 ID=Gvermi8029.t1|Name=Gvermi8029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=364bp
MSTTDRFTKVIDVVSVGNMCIDIMLPISKYPIAQGEHQRLRHGAFFEIGG
SLNALISATRLKARTAAIAYISTERKDLHPSEVFLSEYLRSAAQREGINV
QGLVPHFMGTVATCAALFDPSGSHTFLASNEDIQNLECFNQQLPKVMEDR
VIESRALIIDGYALHSDRELVRQCLQVAVRNECEIWFDPQAATKSLVQRN
DHLFSQILESAEGISLNLDEAKMLTGKDDVRDIIQALPCLSNAKTVLLKD
GPRGCQAFAKTKIGEEMCSAPGFDLANNYRDSIGAGDAFIGAFLAGKLVH
GLELRDCCLLANAMAAATCVQHGAGSSGIGSQDQMMQMLSRGSLNLSRIL
QTLELSRLSSTDR*

spliced messenger RNA

>Gvermi8029.t1 ID=Gvermi8029.t1|Name=Gvermi8029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:755663..756754+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACTACCGACAGATTTACGAAGGTGATAGATGTTGTTTCTGTTGG
TAATATGTGCATTGACATTATGCTACCAATCAGCAAGTACCCTATTGCTC
AAGGTGAACATCAAAGGCTGAGACATGGTGCTTTCTTCGAAATCGGTGGT
TCTCTAAATGCACTAATAAGTGCTACACGACTGAAAGCAAGAACGGCTGC
GATTGCTTATATAAGCACCGAAAGAAAAGATCTCCATCCCAGTGAAGTAT
TTCTGTCGGAGTACCTACGCAGTGCGGCTCAACGCGAAGGTATAAATGTA
CAGGGCTTAGTCCCGCATTTCATGGGAACCGTTGCGACATGTGCAGCTCT
CTTTGATCCATCTGGCTCGCACACTTTTCTCGCTTCAAATGAAGACATCC
AGAATCTAGAATGTTTCAATCAACAGCTACCAAAAGTTATGGAAGACCGG
GTCATCGAGTCGAGAGCTCTTATAATTGACGGATACGCGCTACATAGTGA
TCGAGAATTGGTACGGCAGTGCCTACAAGTTGCAGTACGGAACGAATGTG
AGATTTGGTTCGACCCTCAAGCAGCTACCAAATCGCTCGTGCAACGAAAC
GATCACCTTTTTTCTCAAATCCTTGAATCTGCGGAAGGCATTTCTCTGAA
CTTAGATGAAGCTAAGATGCTCACTGGCAAAGACGATGTTCGAGACATCA
TCCAAGCACTGCCGTGCCTTTCGAATGCAAAAACAGTACTCTTAAAAGAT
GGCCCTCGCGGATGTCAAGCATTTGCCAAGACTAAAATTGGAGAAGAAAT
GTGCAGTGCACCAGGTTTTGATCTTGCGAACAACTACCGAGACTCGATTG
GGGCAGGCGATGCCTTCATCGGTGCCTTTTTAGCCGGTAAATTGGTTCAT
GGGCTTGAGCTCCGAGATTGCTGCCTTCTAGCGAATGCAATGGCTGCCGC
AACTTGTGTACAACATGGCGCGGGATCTAGTGGAATAGGTTCTCAAGATC
AAATGATGCAGATGCTTTCGCGCGGCTCCTTGAATTTGTCTCGAATTTTG
CAGACTCTGGAGCTAAGCAGGCTTTCTAGTACGGATAGATGA

protein sequence of Gvermi8029.t1

>Gvermi8029.t1 ID=Gvermi8029.t1|Name=Gvermi8029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=364bp
MSTTDRFTKVIDVVSVGNMCIDIMLPISKYPIAQGEHQRLRHGAFFEIGG
SLNALISATRLKARTAAIAYISTERKDLHPSEVFLSEYLRSAAQREGINV
QGLVPHFMGTVATCAALFDPSGSHTFLASNEDIQNLECFNQQLPKVMEDR
VIESRALIIDGYALHSDRELVRQCLQVAVRNECEIWFDPQAATKSLVQRN
DHLFSQILESAEGISLNLDEAKMLTGKDDVRDIIQALPCLSNAKTVLLKD
GPRGCQAFAKTKIGEEMCSAPGFDLANNYRDSIGAGDAFIGAFLAGKLVH
GLELRDCCLLANAMAAATCVQHGAGSSGIGSQDQMMQMLSRGSLNLSRIL
QTLELSRLSSTDR*

mRNA from alignment at ScGOVlb_24226:755663..756754+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8029.t1 ID=Gvermi8029.t1|Name=Gvermi8029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:755663..756754+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTACTACCGACAGATTTACGAAGGTGATAGATGTTGTTTCTGTTGG
TAATATGTGCATTGACATTATGCTACCAATCAGCAAGTACCCTATTGCTC
AAGGTGAACATCAAAGGCTGAGACATGGTGCTTTCTTCGAAATCGGTGGT
TCTCTAAATGCACTAATAAGTGCTACACGACTGAAAGCAAGAACGGCTGC
GATTGCTTATATAAGCACCGAAAGAAAAGATCTCCATCCCAGTGAAGTAT
TTCTGTCGGAGTACCTACGCAGTGCGGCTCAACGCGAAGGTATAAATGTA
CAGGGCTTAGTCCCGCATTTCATGGGAACCGTTGCGACATGTGCAGCTCT
CTTTGATCCATCTGGCTCGCACACTTTTCTCGCTTCAAATGAAGACATCC
AGAATCTAGAATGTTTCAATCAACAGCTACCAAAAGTTATGGAAGACCGG
GTCATCGAGTCGAGAGCTCTTATAATTGACGGATACGCGCTACATAGTGA
TCGAGAATTGGTACGGCAGTGCCTACAAGTTGCAGTACGGAACGAATGTG
AGATTTGGTTCGACCCTCAAGCAGCTACCAAATCGCTCGTGCAACGAAAC
GATCACCTTTTTTCTCAAATCCTTGAATCTGCGGAAGGCATTTCTCTGAA
CTTAGATGAAGCTAAGATGCTCACTGGCAAAGACGATGTTCGAGACATCA
TCCAAGCACTGCCGTGCCTTTCGAATGCAAAAACAGTACTCTTAAAAGAT
GGCCCTCGCGGATGTCAAGCATTTGCCAAGACTAAAATTGGAGAAGAAAT
GTGCAGTGCACCAGGTTTTGATCTTGCGAACAACTACCGAGACTCGATTG
GGGCAGGCGATGCCTTCATCGGTGCCTTTTTAGCCGGTAAATTGGTTCAT
GGGCTTGAGCTCCGAGATTGCTGCCTTCTAGCGAATGCAATGGCTGCCGC
AACTTGTGTACAACATGGCGCGGGATCTAGTGGAATAGGTTCTCAAGATC
AAATGATGCAGATGCTTTCGCGCGGCTCCTTGAATTTGTCTCGAATTTTG
CAGACTCTGGAGCTAAGCAGGCTTTCTAGTACGGATAGATGA

Coding sequence (CDS) from alignment at ScGOVlb_24226:755663..756754+

>Gvermi8029.t1 ID=Gvermi8029.t1|Name=Gvermi8029.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1092bp|location=Sequence derived from alignment at ScGOVlb_24226:755663..756754+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTACTACCGACAGATTTACGAAGGTGATAGATGTTGTTTCTGTTGG
TAATATGTGCATTGACATTATGCTACCAATCAGCAAGTACCCTATTGCTC
AAGGTGAACATCAAAGGCTGAGACATGGTGCTTTCTTCGAAATCGGTGGT
TCTCTAAATGCACTAATAAGTGCTACACGACTGAAAGCAAGAACGGCTGC
GATTGCTTATATAAGCACCGAAAGAAAAGATCTCCATCCCAGTGAAGTAT
TTCTGTCGGAGTACCTACGCAGTGCGGCTCAACGCGAAGGTATAAATGTA
CAGGGCTTAGTCCCGCATTTCATGGGAACCGTTGCGACATGTGCAGCTCT
CTTTGATCCATCTGGCTCGCACACTTTTCTCGCTTCAAATGAAGACATCC
AGAATCTAGAATGTTTCAATCAACAGCTACCAAAAGTTATGGAAGACCGG
GTCATCGAGTCGAGAGCTCTTATAATTGACGGATACGCGCTACATAGTGA
TCGAGAATTGGTACGGCAGTGCCTACAAGTTGCAGTACGGAACGAATGTG
AGATTTGGTTCGACCCTCAAGCAGCTACCAAATCGCTCGTGCAACGAAAC
GATCACCTTTTTTCTCAAATCCTTGAATCTGCGGAAGGCATTTCTCTGAA
CTTAGATGAAGCTAAGATGCTCACTGGCAAAGACGATGTTCGAGACATCA
TCCAAGCACTGCCGTGCCTTTCGAATGCAAAAACAGTACTCTTAAAAGAT
GGCCCTCGCGGATGTCAAGCATTTGCCAAGACTAAAATTGGAGAAGAAAT
GTGCAGTGCACCAGGTTTTGATCTTGCGAACAACTACCGAGACTCGATTG
GGGCAGGCGATGCCTTCATCGGTGCCTTTTTAGCCGGTAAATTGGTTCAT
GGGCTTGAGCTCCGAGATTGCTGCCTTCTAGCGAATGCAATGGCTGCCGC
AACTTGTGTACAACATGGCGCGGGATCTAGTGGAATAGGTTCTCAAGATC
AAATGATGCAGATGCTTTCGCGCGGCTCCTTGAATTTGTCTCGAATTTTG
CAGACTCTGGAGCTAAGCAGGCTTTCTAGTACGGATAGATGA