Gvermi8083.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8083.t1
Unique Name	Gvermi8083.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	279

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24226	contig	ScGOVlb_24226:954532..955368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMB115CT
Max annot lvl	2759\|Eukaryota
Evalue	4.3e-11
EggNOG OGs	2CGEV@1\|root,2S9K2@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8083	Gvermi8083	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24226 954532..955368 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8083.t1.start1	Gvermi8083.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24226 954532..954534 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8083.t1.CDS1	Gvermi8083.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24226 954532..955368 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8083.t1.exon1	Gvermi8083.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24226 954532..955368 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8083.t1.stop1	Gvermi8083.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24226 955366..955368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8083.t1	Gvermi8083.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24226 954532..955368 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24226:954532..955368+
coding sequence from alignment at ScGOVlb_24226:954532..955368+

mRNA sequence

>Gvermi8083.t1 ID=Gvermi8083.t1|Name=Gvermi8083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=279bp
MLSEAISATQDALFRSQLQRVRRASNVAVSDEAQLSSRFRVHGWRWHHLG
IIRDLTRLETKAAKNRRQLCQVRNEAESGSLRRQMHDALQYIIHDNWALH
NFVEHTLFLPWIQSRDASGVHADAVHTISNQRRRLQRHACMLDERIAEWS
ETNNRKPAMTQQSCENELQTIISNLQRLRRNAALLFDVSEQVLVPHVKLH
FSEAEQLRFNSRVLREISPKQARVSLVIFRDALDLKHPVVAHSDDVLNFH
RDVPAPIRKVGVPLWRKRFVGDRIRFLD*

spliced messenger RNA

>Gvermi8083.t1 ID=Gvermi8083.t1|Name=Gvermi8083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=837bp|location=Sequence derived from alignment at ScGOVlb_24226:954532..955368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGTGAGGCGATATCGGCAACCCAGGACGCTCTCTTCCGCAGCCA
GCTGCAAAGAGTACGACGCGCAAGCAATGTGGCTGTCTCAGACGAGGCGC
AACTATCATCGCGCTTCCGCGTTCATGGGTGGCGATGGCATCATCTAGGA
ATCATTCGCGATCTGACGCGCCTCGAAACCAAAGCGGCCAAAAACAGACG
TCAGCTCTGTCAAGTGCGAAACGAGGCCGAATCTGGCTCATTGCGTCGTC
AGATGCACGATGCCTTACAGTACATCATCCATGACAACTGGGCGCTTCAC
AACTTTGTTGAACACACGCTGTTCTTGCCATGGATCCAGAGCCGGGATGC
GAGCGGGGTGCACGCTGATGCCGTGCATACCATCAGCAACCAGCGGAGAA
GGTTGCAGCGGCATGCGTGCATGCTGGACGAACGGATTGCAGAATGGAGT
GAGACCAATAACCGCAAACCGGCAATGACGCAACAGTCTTGTGAAAACGA
GCTGCAGACCATCATCAGCAACCTGCAGAGGTTGCGAAGAAATGCGGCGC
TTTTGTTTGACGTGTCCGAACAAGTTTTGGTGCCACATGTCAAGTTGCAC
TTCTCGGAGGCGGAGCAACTGCGGTTCAACTCGAGGGTGCTGCGGGAGAT
TTCGCCAAAGCAAGCCCGCGTATCGTTGGTTATTTTTCGAGATGCTTTGG
ATTTAAAACATCCAGTTGTGGCGCACAGCGATGATGTGCTCAACTTCCAT
CGAGATGTTCCTGCGCCCATACGGAAAGTGGGCGTTCCTTTATGGAGGAA
ACGTTTTGTAGGAGATAGAATACGCTTTTTAGACTAA

protein sequence of Gvermi8083.t1

>Gvermi8083.t1 ID=Gvermi8083.t1|Name=Gvermi8083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=279bp
MLSEAISATQDALFRSQLQRVRRASNVAVSDEAQLSSRFRVHGWRWHHLG
IIRDLTRLETKAAKNRRQLCQVRNEAESGSLRRQMHDALQYIIHDNWALH
NFVEHTLFLPWIQSRDASGVHADAVHTISNQRRRLQRHACMLDERIAEWS
ETNNRKPAMTQQSCENELQTIISNLQRLRRNAALLFDVSEQVLVPHVKLH
FSEAEQLRFNSRVLREISPKQARVSLVIFRDALDLKHPVVAHSDDVLNFH
RDVPAPIRKVGVPLWRKRFVGDRIRFLD*

mRNA from alignment at ScGOVlb_24226:954532..955368+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8083.t1 ID=Gvermi8083.t1|Name=Gvermi8083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=837bp|location=Sequence derived from alignment at ScGOVlb_24226:954532..955368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGTGAGGCGATATCGGCAACCCAGGACGCTCTCTTCCGCAGCCA
GCTGCAAAGAGTACGACGCGCAAGCAATGTGGCTGTCTCAGACGAGGCGC
AACTATCATCGCGCTTCCGCGTTCATGGGTGGCGATGGCATCATCTAGGA
ATCATTCGCGATCTGACGCGCCTCGAAACCAAAGCGGCCAAAAACAGACG
TCAGCTCTGTCAAGTGCGAAACGAGGCCGAATCTGGCTCATTGCGTCGTC
AGATGCACGATGCCTTACAGTACATCATCCATGACAACTGGGCGCTTCAC
AACTTTGTTGAACACACGCTGTTCTTGCCATGGATCCAGAGCCGGGATGC
GAGCGGGGTGCACGCTGATGCCGTGCATACCATCAGCAACCAGCGGAGAA
GGTTGCAGCGGCATGCGTGCATGCTGGACGAACGGATTGCAGAATGGAGT
GAGACCAATAACCGCAAACCGGCAATGACGCAACAGTCTTGTGAAAACGA
GCTGCAGACCATCATCAGCAACCTGCAGAGGTTGCGAAGAAATGCGGCGC
TTTTGTTTGACGTGTCCGAACAAGTTTTGGTGCCACATGTCAAGTTGCAC
TTCTCGGAGGCGGAGCAACTGCGGTTCAACTCGAGGGTGCTGCGGGAGAT
TTCGCCAAAGCAAGCCCGCGTATCGTTGGTTATTTTTCGAGATGCTTTGG
ATTTAAAACATCCAGTTGTGGCGCACAGCGATGATGTGCTCAACTTCCAT
CGAGATGTTCCTGCGCCCATACGGAAAGTGGGCGTTCCTTTATGGAGGAA
ACGTTTTGTAGGAGATAGAATACGCTTTTTAGACTAA

Coding sequence (CDS) from alignment at ScGOVlb_24226:954532..955368+

>Gvermi8083.t1 ID=Gvermi8083.t1|Name=Gvermi8083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=837bp|location=Sequence derived from alignment at ScGOVlb_24226:954532..955368+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGTGAGGCGATATCGGCAACCCAGGACGCTCTCTTCCGCAGCCA
GCTGCAAAGAGTACGACGCGCAAGCAATGTGGCTGTCTCAGACGAGGCGC
AACTATCATCGCGCTTCCGCGTTCATGGGTGGCGATGGCATCATCTAGGA
ATCATTCGCGATCTGACGCGCCTCGAAACCAAAGCGGCCAAAAACAGACG
TCAGCTCTGTCAAGTGCGAAACGAGGCCGAATCTGGCTCATTGCGTCGTC
AGATGCACGATGCCTTACAGTACATCATCCATGACAACTGGGCGCTTCAC
AACTTTGTTGAACACACGCTGTTCTTGCCATGGATCCAGAGCCGGGATGC
GAGCGGGGTGCACGCTGATGCCGTGCATACCATCAGCAACCAGCGGAGAA
GGTTGCAGCGGCATGCGTGCATGCTGGACGAACGGATTGCAGAATGGAGT
GAGACCAATAACCGCAAACCGGCAATGACGCAACAGTCTTGTGAAAACGA
GCTGCAGACCATCATCAGCAACCTGCAGAGGTTGCGAAGAAATGCGGCGC
TTTTGTTTGACGTGTCCGAACAAGTTTTGGTGCCACATGTCAAGTTGCAC
TTCTCGGAGGCGGAGCAACTGCGGTTCAACTCGAGGGTGCTGCGGGAGAT
TTCGCCAAAGCAAGCCCGCGTATCGTTGGTTATTTTTCGAGATGCTTTGG
ATTTAAAACATCCAGTTGTGGCGCACAGCGATGATGTGCTCAACTTCCAT
CGAGATGTTCCTGCGCCCATACGGAAAGTGGGCGTTCCTTTATGGAGGAA
ACGTTTTGTAGGAGATAGAATACGCTTTTTAGACTAA