Gvermi7945.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7945.t1
Unique NameGvermi7945.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:273919..275055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002613937.1
Preferred nameWRAP73
PFAMsANAPC4_WD40,WD40
Max annot lvl33208|Metazoa
GOsGO:0000226,GO:0000278,GO:0000280,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0010638,GO:0015630,GO:0016043,GO:0022402,GO:0022607,GO:0031344,GO:0031346,GO:0033043,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0045724,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051225,GO:0060491,GO:0065007,GO:0070925,GO:0071840,GO:0090307,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0140014,GO:1902017,GO:1902115,GO:1902117,GO:1902850,GO:1902855,GO:1902857,GO:1903047
Evalue1.14e-19
EggNOG OGsKOG4497@1|root,KOG4497@2759|Eukaryota,38DYS@33154|Opisthokonta,3BAPY@33208|Metazoa,3CZC7@33213|Bilateria,4816M@7711|Chordata
Descriptionpositive regulation of non-motile cilium assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7945Gvermi7945Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 273919..275055 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7945.t1.stop1Gvermi7945.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 273919..273921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7945.t1.CDS1Gvermi7945.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 273919..275055 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7945.t1.exon1Gvermi7945.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 273919..275055 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7945.t1.start1Gvermi7945.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 275053..275055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7945.t1Gvermi7945.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 273919..275055 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7945.t1 ID=Gvermi7945.t1|Name=Gvermi7945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=379bp
LATLHFPKVHRSSWVHHFSECGNLLVTVTRKNASDTLCIIACKTAQVLRS
IQLHHSVGITDIVGVKCLRNNAGIVVWGSPIDHVHSLALLSWSGRVLFHH
SPIQHVPSRITSLRNVTFNGAHSVMAVCAFDDVLTLLDIHRWSVIKQFAH
RSPNVSDAHPPVIYRERTKAMQHDENSSRRSNVSRIPRARSSVRSRNGSA
SKEKKKGARCSYFEIVNTENEVEITKRVRTFSAKRTAFGGVSMCEFSPDG
RYIATRTESASNVVFVWDVLNLCLATLLVLEQDVTSFKWNCASVSADGRK
SDGDDSQLAIVCGGDCLYLWKRGGAASLNVSDHIRWRSRFCARKVEWLYD
NSAVVVTDGVSAKAFLTVFVDTPSALAS*
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spliced messenger RNA

>Gvermi7945.t1 ID=Gvermi7945.t1|Name=Gvermi7945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_24226:273919..275055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCCACTTTGCACTTTCCCAAGGTGCACCGCTCGTCGTGGGTGCACCA
CTTCTCGGAGTGCGGCAACCTGCTCGTCACCGTCACGCGCAAAAATGCGT
CGGACACACTGTGTATCATAGCCTGTAAGACCGCGCAGGTGCTGCGCTCC
ATACAACTGCACCACAGCGTTGGCATCACGGACATCGTTGGCGTCAAATG
CCTCAGAAACAATGCGGGAATCGTGGTGTGGGGCTCGCCCATCGATCACG
TTCATTCGCTTGCGCTTCTTTCTTGGTCGGGGCGAGTTTTGTTTCACCAT
TCCCCGATTCAGCACGTCCCGAGCCGCATCACATCCCTGCGCAATGTCAC
CTTCAATGGCGCCCATTCCGTCATGGCTGTTTGCGCTTTCGACGATGTTC
TCACGTTGCTGGACATTCATCGATGGAGTGTCATAAAGCAGTTTGCGCAC
CGTTCCCCCAACGTCAGCGATGCGCACCCCCCGGTCATCTATCGTGAACG
AACCAAAGCAATGCAACACGACGAGAATTCCTCGCGCCGCTCCAATGTTT
CTCGCATCCCCCGAGCGCGCTCCAGCGTGCGCAGTCGAAATGGGAGTGCT
TCCAAGGAGAAGAAAAAGGGCGCGCGCTGCAGCTATTTCGAGATCGTCAA
CACTGAAAACGAAGTCGAAATTACAAAACGCGTGCGCACATTCAGCGCCA
AAAGAACGGCCTTTGGCGGCGTGTCCATGTGCGAGTTCTCTCCCGACGGC
CGCTACATTGCAACCCGGACAGAATCTGCCTCCAACGTCGTGTTCGTTTG
GGATGTGCTCAACCTCTGTCTGGCCACGCTCCTCGTCTTGGAGCAAGACG
TGACCAGTTTCAAGTGGAACTGCGCTTCTGTGTCCGCAGACGGCCGCAAG
TCTGATGGCGACGACAGTCAGTTGGCGATTGTGTGCGGCGGCGACTGTTT
GTACTTGTGGAAACGGGGCGGAGCCGCTTCGCTCAATGTCTCCGACCACA
TTCGCTGGCGCAGCCGGTTCTGCGCGAGGAAAGTTGAGTGGTTGTACGAC
AACTCGGCTGTTGTCGTCACCGACGGCGTCTCGGCGAAGGCGTTCTTGAC
CGTTTTCGTCGATACTCCGAGCGCCCTGGCGAGCTGA
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protein sequence of Gvermi7945.t1

>Gvermi7945.t1 ID=Gvermi7945.t1|Name=Gvermi7945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=379bp
LATLHFPKVHRSSWVHHFSECGNLLVTVTRKNASDTLCIIACKTAQVLRS
IQLHHSVGITDIVGVKCLRNNAGIVVWGSPIDHVHSLALLSWSGRVLFHH
SPIQHVPSRITSLRNVTFNGAHSVMAVCAFDDVLTLLDIHRWSVIKQFAH
RSPNVSDAHPPVIYRERTKAMQHDENSSRRSNVSRIPRARSSVRSRNGSA
SKEKKKGARCSYFEIVNTENEVEITKRVRTFSAKRTAFGGVSMCEFSPDG
RYIATRTESASNVVFVWDVLNLCLATLLVLEQDVTSFKWNCASVSADGRK
SDGDDSQLAIVCGGDCLYLWKRGGAASLNVSDHIRWRSRFCARKVEWLYD
NSAVVVTDGVSAKAFLTVFVDTPSALAS*
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mRNA from alignment at ScGOVlb_24226:273919..275055-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7945.t1 ID=Gvermi7945.t1|Name=Gvermi7945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at ScGOVlb_24226:273919..275055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCACTTTGCACTTTCCCAAGGTGCACCGCTCGTCGTGGGTGCACCA
CTTCTCGGAGTGCGGCAACCTGCTCGTCACCGTCACGCGCAAAAATGCGT
CGGACACACTGTGTATCATAGCCTGTAAGACCGCGCAGGTGCTGCGCTCC
ATACAACTGCACCACAGCGTTGGCATCACGGACATCGTTGGCGTCAAATG
CCTCAGAAACAATGCGGGAATCGTGGTGTGGGGCTCGCCCATCGATCACG
TTCATTCGCTTGCGCTTCTTTCTTGGTCGGGGCGAGTTTTGTTTCACCAT
TCCCCGATTCAGCACGTCCCGAGCCGCATCACATCCCTGCGCAATGTCAC
CTTCAATGGCGCCCATTCCGTCATGGCTGTTTGCGCTTTCGACGATGTTC
TCACGTTGCTGGACATTCATCGATGGAGTGTCATAAAGCAGTTTGCGCAC
CGTTCCCCCAACGTCAGCGATGCGCACCCCCCGGTCATCTATCGTGAACG
AACCAAAGCAATGCAACACGACGAGAATTCCTCGCGCCGCTCCAATGTTT
CTCGCATCCCCCGAGCGCGCTCCAGCGTGCGCAGTCGAAATGGGAGTGCT
TCCAAGGAGAAGAAAAAGGGCGCGCGCTGCAGCTATTTCGAGATCGTCAA
CACTGAAAACGAAGTCGAAATTACAAAACGCGTGCGCACATTCAGCGCCA
AAAGAACGGCCTTTGGCGGCGTGTCCATGTGCGAGTTCTCTCCCGACGGC
CGCTACATTGCAACCCGGACAGAATCTGCCTCCAACGTCGTGTTCGTTTG
GGATGTGCTCAACCTCTGTCTGGCCACGCTCCTCGTCTTGGAGCAAGACG
TGACCAGTTTCAAGTGGAACTGCGCTTCTGTGTCCGCAGACGGCCGCAAG
TCTGATGGCGACGACAGTCAGTTGGCGATTGTGTGCGGCGGCGACTGTTT
GTACTTGTGGAAACGGGGCGGAGCCGCTTCGCTCAATGTCTCCGACCACA
TTCGCTGGCGCAGCCGGTTCTGCGCGAGGAAAGTTGAGTGGTTGTACGAC
AACTCGGCTGTTGTCGTCACCGACGGCGTCTCGGCGAAGGCGTTCTTGAC
CGTTTTCGTCGATACTCCGAGCGCCCTGGCGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:273919..275055-

>Gvermi7945.t1 ID=Gvermi7945.t1|Name=Gvermi7945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1137bp|location=Sequence derived from alignment at ScGOVlb_24226:273919..275055- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCCACTTTGCACTTTCCCAAGGTGCACCGCTCGTCGTGGGTGCACCA
CTTCTCGGAGTGCGGCAACCTGCTCGTCACCGTCACGCGCAAAAATGCGT
CGGACACACTGTGTATCATAGCCTGTAAGACCGCGCAGGTGCTGCGCTCC
ATACAACTGCACCACAGCGTTGGCATCACGGACATCGTTGGCGTCAAATG
CCTCAGAAACAATGCGGGAATCGTGGTGTGGGGCTCGCCCATCGATCACG
TTCATTCGCTTGCGCTTCTTTCTTGGTCGGGGCGAGTTTTGTTTCACCAT
TCCCCGATTCAGCACGTCCCGAGCCGCATCACATCCCTGCGCAATGTCAC
CTTCAATGGCGCCCATTCCGTCATGGCTGTTTGCGCTTTCGACGATGTTC
TCACGTTGCTGGACATTCATCGATGGAGTGTCATAAAGCAGTTTGCGCAC
CGTTCCCCCAACGTCAGCGATGCGCACCCCCCGGTCATCTATCGTGAACG
AACCAAAGCAATGCAACACGACGAGAATTCCTCGCGCCGCTCCAATGTTT
CTCGCATCCCCCGAGCGCGCTCCAGCGTGCGCAGTCGAAATGGGAGTGCT
TCCAAGGAGAAGAAAAAGGGCGCGCGCTGCAGCTATTTCGAGATCGTCAA
CACTGAAAACGAAGTCGAAATTACAAAACGCGTGCGCACATTCAGCGCCA
AAAGAACGGCCTTTGGCGGCGTGTCCATGTGCGAGTTCTCTCCCGACGGC
CGCTACATTGCAACCCGGACAGAATCTGCCTCCAACGTCGTGTTCGTTTG
GGATGTGCTCAACCTCTGTCTGGCCACGCTCCTCGTCTTGGAGCAAGACG
TGACCAGTTTCAAGTGGAACTGCGCTTCTGTGTCCGCAGACGGCCGCAAG
TCTGATGGCGACGACAGTCAGTTGGCGATTGTGTGCGGCGGCGACTGTTT
GTACTTGTGGAAACGGGGCGGAGCCGCTTCGCTCAATGTCTCCGACCACA
TTCGCTGGCGCAGCCGGTTCTGCGCGAGGAAAGTTGAGTGGTTGTACGAC
AACTCGGCTGTTGTCGTCACCGACGGCGTCTCGGCGAAGGCGTTCTTGAC
CGTTTTCGTCGATACTCCGAGCGCCCTGGCGAGCTGA
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