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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1121921.KB898708_gene1531 |
| Preferred name | ligA |
| PFAMs | BRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5 |
| Max annot lvl | 1236|Gammaproteobacteria |
| KEGG rclass | RC00005 |
| KEGG ko | ko:K01972 |
| KEGG Reaction | R00382 |
| KEGG Pathway | ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 |
| GOs | GO:0000166,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003911,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006266,GO:0006281,GO:0006284,GO:0006288,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016874,GO:0016886,GO:0033554,GO:0034641,GO:0034645,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050662,GO:0050896,GO:0051103,GO:0051287,GO:0051716,GO:0070403,GO:0071704,GO:0090304,GO:0097159,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901576 |
| Evalue | 5.77e-13 |
| EggNOG OGs | COG0272@1|root,COG0272@2|Bacteria,1MV3R@1224|Proteobacteria,1RPAV@1236|Gammaproteobacteria,2PMTW@256005|Alteromonadales genera incertae sedis |
| EC | 6.5.1.2 |
| Description | breast cancer carboxy-terminal domain |
| COG category | L |
| BiGG Reaction | iEC55989_1330.EC55989_2701,iECABU_c1320.ECABU_c27320,iECIAI1_1343.ECIAI1_2469,iECO103_1326.ECO103_2930,iECO111_1330.ECO111_3141,iECO26_1355.ECO26_3464,iECSE_1348.ECSE_2702,iECW_1372.ECW_m2640,iEKO11_1354.EKO11_1317,iEcE24377_1341.EcE24377A_2698,iEcSMS35_1347.EcSMS35_2566,iWFL_1372.ECW_m2640,iYL1228.KPN_02758,ic_1306.c2945 |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=504bp MLRWSKSLKWKGYIEVAKKFGGEGQFGSKAGDKPKTEYLQSILDSQFVFT PCGNAMETQRVLDEEYLYDLVDDILISNPIMGSREHEGCINKLMRKVKED SSRGKHLYWPFANARIEIPASNVLKRLLGKRTTRRADLLVLRSDAYSRSS SRTRTRATDTNVLVRLNDRKPKLVLEVTSRSSSRHADLNAKVNEYQRRRI DTYVIVDRATSSPSVIVYRRLNSHRSRYTKRVYRGSQRVRCHIFDGMSTE DMLTPLEEDAEKRDLSQRFETESRLVDENRRQSEEIERLRAAIHPYGSVE RTDAQREARAKYIGGKPRTSEALFRYTSFLSGGEFDMIIDRLRAQWLERV QYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDEL LSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRAL TRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKEDT SMK* back to topspliced messenger RNA >Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24226:3914..8809+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTACGTTGGTCCAAGTCGCTCAAGTGGAAGGGCTACATTGAGGTGGC GAAGAAATTCGGCGGTGAAGGGCAGTTTGGCAGCAAGGCGGGCGATAAGC CGAAGACCGAATACCTGCAGAGCATTCTCGACAGCCAGTTTGTGTTCACG CCGTGCGGAAATGCAATGGAGACACAGCGAGTGCTCGACGAAGAATACTT GTACGATCTTGTGGACGATATATTGATATCAAACCCAATCATGGGCTCGC GCGAACATGAAGGCTGCATAAACAAACTGATGCGCAAAGTCAAGGAAGAC AGTTCAAGAGGCAAACACTTGTACTGGCCATTTGCAAACGCTAGAATTGA AATCCCCGCAAGCAATGTGCTCAAGCGTTTGCTTGGAAAGCGAACCACAA GGCGCGCCGACTTACTCGTCTTGCGCTCTGACGCTTACTCGCGCTCTTCC AGTCGTACTCGCACCCGCGCTACTGACACAAATGTTCTTGTGCGACTGAA CGACAGAAAACCCAAGCTCGTGCTTGAAGTAACTAGCCGCTCCTCATCGC GACATGCTGACCTTAACGCTAAAGTGAACGAGTACCAGCGACGCCGCATC GACACGTACGTTATCGTCGACAGAGCAACCTCTAGCCCATCTGTGATAGT ATATCGGCGTTTGAATTCTCATCGTTCAAGATACACGAAGCGTGTCTATC GCGGTTCACAGCGTGTTCGCTGTCACATTTTTGACGGCATGAGCACGGAA GACATGCTCACCCCACTTGAAGAGGATGCTGAAAAACGAGATTTGTCTCA AAGATTTGAGACTGAAAGCAGACTGGTGGACGAAAACAGGCGGCAGAGTG AAGAGATTGAACGTCTCCGAGCAGCAATTCATCCATATGGTTCAGTCGAA CGTACGGATGCGCAGCGTGAAGCAAGAGCGAAATATATTGGCGGCAAACC GAGAACGAGTGAAGCTCTCTTCCGATATACCAGCTTTCTTTCCGGGGGAG AGTTTGACATGATAATTGATAGATTGCGCGCTCAGTGGCTTGAACGAGTT CAATATGAGGCTCTTGGCAAAGCGGTGAGACCGAACCAAGATATGAGGTT CTTATATAACAAGCTTATCGACGAGATAAAGTTCTGTGACGAAATGTACT ACGCGGACGACCCAAAACCTCGCATTTCTGACGAAGAGTATGATGAACTT CTTTCTTTGGACAATGAATACTCCCATGCAGACCTAACGGTCTTTGTGAA CCGAGCGTTGGCTGTTCAATCCGAGATATCTGCTGAGCCTAAGATTGAGG GAGTCGCACTATCGCTGGAATACCACGATCGCAAGCTTTGTCGAGCATTG ACGAGGGGGACTGGATGGGTTGGTGATGATATAACTGAGAACGTTCGAGA ATCTCTTATGGGAAGAGGAGTTGTGAACAACATTCCTGACGCTAGCGCCC CGGACTCTCTAATTGTTCGCGGTGAAGTGTATATAACAAAAGAAGACACT TCGATGAAGTGA back to topprotein sequence of Gvermi7923.t1 >Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=504bp
MLRWSKSLKWKGYIEVAKKFGGEGQFGSKAGDKPKTEYLQSILDSQFVFT PCGNAMETQRVLDEEYLYDLVDDILISNPIMGSREHEGCINKLMRKVKED SSRGKHLYWPFANARIEIPASNVLKRLLGKRTTRRADLLVLRSDAYSRSS SRTRTRATDTNVLVRLNDRKPKLVLEVTSRSSSRHADLNAKVNEYQRRRI DTYVIVDRATSSPSVIVYRRLNSHRSRYTKRVYRGSQRVRCHIFDGMSTE DMLTPLEEDAEKRDLSQRFETESRLVDENRRQSEEIERLRAAIHPYGSVE RTDAQREARAKYIGGKPRTSEALFRYTSFLSGGEFDMIIDRLRAQWLERV QYEALGKAVRPNQDMRFLYNKLIDEIKFCDEMYYADDPKPRISDEEYDEL LSLDNEYSHADLTVFVNRALAVQSEISAEPKIEGVALSLEYHDRKLCRAL TRGTGWVGDDITENVRESLMGRGVVNNIPDASAPDSLIVRGEVYITKEDT SMK* back to topmRNA from alignment at ScGOVlb_24226:3914..8809+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4896bp|location=Sequence derived from alignment at ScGOVlb_24226:3914..8809+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTACGTTGGTCCAAGTCGCTCAAGTGGAAGGGCTACATTGAGGTGGC
GAAGAAATTCGGCGGTGAAGGGCAGTTTGGCAGCAAGGCGGGCGATAAGC
CGAAGACCGAATACCTGCAGAGCATTCTCGACAGCCAGTTTGTGTTCACG
CCGTGCGGAAATGCAATGGAGACACAGCGAGTGTACGAAGCCATTGCACT
CAGTGCGAACGCGAGCTCGTCGTGCTCCTCGCCTCCCGTCGCGTTCATCG
CCTCTCGCGGCCGCCTTGTCGGCAGCGCGTGCAGCAGAGGTGCGCGCACG
TCGGCTCGAAGTGGCCGTCCAACTTGTCCACCCGCGCCAAGCACCGCGTG
CGAGTGCGCCCTCTCGCTGTCCGCGCAGCGACACGCGCAGCGTGTGCCGT
ACAGCTTTGCGACATAGCAGTGCGCTGCACGCGCGGTAGTCGCGCTTCGT
CGTTTCGCGCGTCGTGCACGCATACTATGCGTTGACGGCTACTTGTGGTA
TGTTCTTACCAAGCGGTTGCCGACGCCGCCCCGTCGCCAGGTCGCCGCCG
TCATCGTCGCTGGTCATGGCGATCGTCGCGATAGCACTGCTGACCGCAGC
GCTGTGGCACTGCATCATTGTGTTGTACCGCCTGTGCGTCGTCGCCGCGT
TGCGCGCAACTGGCGTTGATGGCCGAGGGCGCGGCATCGAGACGGAAAGC
GTTTCACTTTCGATGGATCAAAACTGGATATACCCTTGGTACAACATTTT
TCTGGGCTTTGGGTTGAAGCAGATGAAACCAAACTAAATATATTCTTTGC
TTTATGCCGGCTGCATGTAGTCGCGAGGCGACTGGGCTCAAGTTGGAGGC
CCTCGCGACTACGCAAAGCCCCCTTCCAGGCTGGCAGCTGTCGGCCGTCA
CTTGTCTCACTGCGCAAACTTTCGCTTCTCACATCTCTCTACGACGCTTT
CGGTGCACTTGAGTACACACAGATTTTCCGAAGCGCCGCGAAGAGCCATC
ATGGATCCCGTCCCTCCGCAACGCTGCCCTCTCGGCGACGAGCAATTTCG
GCTTCCCCTGCCATACCATAACGCAACCTCACCCTGCTTTTCGGCGACAC
TTCCTGCCGCAGAGCGCCAGCACCCTCTCTTGAACGCGCAGTCGTCCACA
GCCGTTGCGCAACCAGATGAGCCTGTGGGCCCCCTCCAACTCACGATTTG
CACTTACAATGAGTACCTACGCCACAGGCTCGACGAAGAATACTTGTACG
ATCTTGTGGACGATATATTGATATCAAACCCAATCATGGGCTCGCGCGAA
CATGAAGGCTGCATAAACAAACTGATGCGCAAAGTCAAGGAAGACAGTTC
AAGAGGCAAACACTTGTACTGGCCATTTGCAAACGCTAGAATTGAAATCC
CCGCAAGCAATGTGCTCAAGCGTTTGCTTGGAAAGCGAACCACAAGGCGC
GCCGACTTACTCGTCTTGCGCTCTGACGCTTACTCGCGCTCTTCCAGTCG
TACTCGCACCCGCGCTACTGACACAAATGTTCTTGTGCGACTGAACGACA
GAAAACCCAAGCTCGTGCTTGAAGTAACTAGCCGCTCCTCATCGCGACAT
GCTGACCTTAACGCTAAAGTGAACGAGTACCAGCGACGCCGCATCGACAC
GTACGTTATCGTCGACAGAGCAACCTCTAGCCCATCTGTGATAGTATATC
GGCGTTTGAATTCTCATCGTTCAAGATACACGAAGCGTGTCTATCGCGGT
TCACAGCGTGTTCGCTGTCACATTTTTGACGGCATGAGCACGGAAGACAT
GCTCACCCCACTTGAAGAGGATGCTGAAAAACGAGATTTGTCTCAAAGAT
TTGAGACTGAAAGCAGACTGGTGGACGAAAACAGGCGGCAGAGTGAAGAG
ATTGAACGTCTCCGTGCATAGAATCAAAGATTAAAAGAGGATTCTGAAAC
CCATGGGACTCGAAGAACACGGCGACGATCGCCATCTGCGACCGAGAGGA
ACGTACGCTCTGACTTAACTCGAACCAAGAATAAAAGAGGAAGAACGCGT
CGGCAGCACCGGTATTGCCTCCTGCGGGCCACGACGAGCATTAAAGAaca
agcaatgagacgcagagcagccggcgacgcgcagcgggcgacgcgcagcg
ggcgacgcgcaacgggcgacgcgcagcgggtgacgagcgacgagcgacga
gctgcgagcggccaacgacgagcgGTGTTTGGCACGATGGGTGGTAGTCG
GGGTCTGTGATGAGGCATGAGAAGGAGAGCGGGAGCGTGGTTGTGCTCGG
TACATGCAACTGCAAGGTTGCGCTTTTTGGCAAGTCGTGAGTCTCAAGAG
CTAGCTTGGCGCATTGTCAAGTTAGGCGCTGAATCGTAGTATACACGCAC
CGGCGCATCCATGATAGAGGGCGTGCTACGCGGCGCTGAGGGCGCGCGTG
GCGCGACGGCTCGAACGGACGTCGAATGGCACGGCGAGCTCGTGGCCGCT
GGTGGCGGGCATGAGCGCTGGAGACGGCGAGAGAGACAGAGCGGGGGCGC
CAAGCACGGCCTGGAAGCGGTACGGCGCGAACAAGCGCAAGCGCGATGGC
GCTGTGTTGGTCCGAATCGCCGCCCACAAGCGCCGTCGTCAAGAAAGTGG
CGGTGCGAGCTCCTCCGACGGAGGTGGGGGCGGCCATGGTCAACTCACGC
CTTGCTCGTCCCTCCATCAATTCAAAAACTTTCAGGACGCAGGCGATGCT
CGCCGACAAACGAGCAACACGCAACTCCAGGCTCCTATCAACGTACTTGT
TTAAATACGACGGCACCACCGCCACGCCCTTGAGCAGCTCCACCATCTCC
TCCACGCCGCTCGTGAAATCAAGGAGTTCCTGTGCGACGAAGTTGCTCCA
TTGCGACGCGCGATGCGGCGCGCGTTTCAACAAACGACGGCGCGGCTGAC
GGCACGCATCACGCGTTGCCATACTCGTCGCCACGGGAGGCGTGCGCCAG
CGCCAGCGTGCATAGCAGCGAAAGAGAGAGCGCAACGTCCAGCTTGTTCA
TCGTACTCATGCTGTATGCGGCAGTCCGACTACGTTGATGCATACACCAT
CACTCGCTGTGCGGAGGCCACGCCTCATGTAGCCGCGAGCAAGGGGGCAA
AGAGCGCGCTCCATCCCTTCGACGACATGGCGTAGTCTGTCCGAATTGCT
GCCGACGAGCAGCATCTAGCTTCGCGGCGGCGGCCTTCGCGCACATCACG
TCATCAATAAGGCCCTGGCAAAGGCGCTGGAAAATAGGGCCGACTAGCAG
TGGGCGCTGGTCGTGGCATGAAGCCAACGCCATCAGATCGAACAACGGCG
GCAGCAGTATCATCACAAGATGACTCTACGCCAAGCACAATAAACGGCGC
CCCGTCAGGACCATATCTGCGTGGATTCATTGGCGAAGAGTTTGCGGTTA
GTTCCGGTATCAGATAGTCTTTCCAGCGAGATTGGTGGGCGGCGAGCTGT
GGCGGCGGTGTACCGATTTGAACGTTCTTTGGCACGCAAACGTTCTTGCG
GCGACGGTTGCGAGAACAGATTCATCTGGGACGAGCGCGCGGCGGGGTGG
AGGGCGCGGGGATCGGGCGGAAGTGGCCGCAGATGACGAATGAAGGAGAG
GAGGCGGCGCATAGAAGTGGAGGTTAGACGAAGGCGGTGGTACTGCGCGC
GACGCATGGCGGAGGCGGAACGGGATAGAGCCATCTTTGAGATCATGTAC
AGCCTCTCACGACCTTGACAATAAAGGATCACATTTGGTGCCAAATTTGA
AACGCGGGCTACGAAGAAGGATCATCGTTCGTTGTTCTGCGACGTTAAAA
TTTTTTTGTGGTGTCGTTCACAGCAAATGCATGTGGAATTGCATTGCAGA
TCTCGCAGGTCTTCTGCTCAAGGTTCAAGTGGGCTGTCTTAGAACAGCGT
TTTGGAGTGCAAGACTGCCGTGAGGAACTCCGCCAATACATGCCGACGCC
TCTTCTGTGTGCCGTGGTTGCCCAGGAGCAGCAATTCATCCATATGGTTC
AGTCGAACGTACGGATGCGCAGCGTGAAGCAAGAGCGAAATATATTGGCG
GCAAACCGAGAACGAGTGAAGCTCTCTTCCGATATACCAGCTTTCTTTCC
GGGGGAGAGTTTGACATGATAATTGATAGATTGCGCGCTCAGTGGCTTGA
ACGAGTTCAATATGAGGCTCTTGGCAAAGCGGTGAGACCGAACCAAGATA
TGAGGTTCTTATATAACAAGCTTATCGACGAGATAAAGTTCTGTGACGAA
ATGTACTACGCGGACGACCCAAAACCTCGCATTTCTGACGAAGAGTATGA
TGAACTTGTCCGTCACTTTATCGAGCTCGAAAGATGCTATCCATAATCAG
CCCGGGATGATTCTGCTATTCAGACGGTTGGTCATGGAGCAGCCGCCCGC
GCAACAAAACTTGCTCTCGAAAACGAAGTGACCGAAGAAGAATACGTTGA
TTTCCAAGACTCATTTGTTGCCACGGTCCCGGTGACTACGAAGCGCTTCG
AACAGAGCAGACACAATGCTTTCATGCTTTCAAGCTTTCTTTGGACAATG
AATACTCCCATGCAGACCTAACGGTCTTTGTGAACCGAGCGTTGGCTGTT
CAATCCGAGATATCTGCTGAGCCTAAGATTGAGGGAGTCGCACTATCGCT
GGAATACCACGATCGCAAGCTTTGTCGAGCATTGACGAGGGGGACTGGAT
GGGTTGGTGATGATATAACTGAGAACGTTCGAGAATCTCTTATGGGAAGA
GGAGTTGTGAACAACATTCCTGACGCTAGCGCCCCGGACTCTCTAATTGT
TCGCGGTGAAGTGTATATAACAAAAGAAGACACTTCGATGAAGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_24226:3914..8809+ >Gvermi7923.t1 ID=Gvermi7923.t1|Name=Gvermi7923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1512bp|location=Sequence derived from alignment at ScGOVlb_24226:3914..8809+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTACGTTGGTCCAAGTCGCTCAAGTGGAAGGGCTACATTGAGGTGGC GAAGAAATTCGGCGGTGAAGGGCAGTTTGGCAGCAAGGCGGGCGATAAGC CGAAGACCGAATACCTGCAGAGCATTCTCGACAGCCAGTTTGTGTTCACG CCGTGCGGAAATGCAATGGAGACACAGCGAGTGCTCGACGAAGAATACTT GTACGATCTTGTGGACGATATATTGATATCAAACCCAATCATGGGCTCGC GCGAACATGAAGGCTGCATAAACAAACTGATGCGCAAAGTCAAGGAAGAC AGTTCAAGAGGCAAACACTTGTACTGGCCATTTGCAAACGCTAGAATTGA AATCCCCGCAAGCAATGTGCTCAAGCGTTTGCTTGGAAAGCGAACCACAA GGCGCGCCGACTTACTCGTCTTGCGCTCTGACGCTTACTCGCGCTCTTCC AGTCGTACTCGCACCCGCGCTACTGACACAAATGTTCTTGTGCGACTGAA CGACAGAAAACCCAAGCTCGTGCTTGAAGTAACTAGCCGCTCCTCATCGC GACATGCTGACCTTAACGCTAAAGTGAACGAGTACCAGCGACGCCGCATC GACACGTACGTTATCGTCGACAGAGCAACCTCTAGCCCATCTGTGATAGT ATATCGGCGTTTGAATTCTCATCGTTCAAGATACACGAAGCGTGTCTATC GCGGTTCACAGCGTGTTCGCTGTCACATTTTTGACGGCATGAGCACGGAA GACATGCTCACCCCACTTGAAGAGGATGCTGAAAAACGAGATTTGTCTCA AAGATTTGAGACTGAAAGCAGACTGGTGGACGAAAACAGGCGGCAGAGTG AAGAGATTGAACGTCTCCGAGCAGCAATTCATCCATATGGTTCAGTCGAA CGTACGGATGCGCAGCGTGAAGCAAGAGCGAAATATATTGGCGGCAAACC GAGAACGAGTGAAGCTCTCTTCCGATATACCAGCTTTCTTTCCGGGGGAG AGTTTGACATGATAATTGATAGATTGCGCGCTCAGTGGCTTGAACGAGTT CAATATGAGGCTCTTGGCAAAGCGGTGAGACCGAACCAAGATATGAGGTT CTTATATAACAAGCTTATCGACGAGATAAAGTTCTGTGACGAAATGTACT ACGCGGACGACCCAAAACCTCGCATTTCTGACGAAGAGTATGATGAACTT CTTTCTTTGGACAATGAATACTCCCATGCAGACCTAACGGTCTTTGTGAA CCGAGCGTTGGCTGTTCAATCCGAGATATCTGCTGAGCCTAAGATTGAGG GAGTCGCACTATCGCTGGAATACCACGATCGCAAGCTTTGTCGAGCATTG ACGAGGGGGACTGGATGGGTTGGTGATGATATAACTGAGAACGTTCGAGA ATCTCTTATGGGAAGAGGAGTTGTGAACAACATTCCTGACGCTAGCGCCC CGGACTCTCTAATTGTTCGCGGTGAAGTGTATATAACAAAAGAAGACACT TCGATGAAGTGA back to top
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