Gvermi8082.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8082.t1
Unique NameGvermi8082.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length528
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:952410..953993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FZ52
Preferred nameLAP
PFAMsPeptidase_M17,Peptidase_M17_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00096,RC00141,RC02795
KEGG koko:K01255,ko:K03010
KEGG ReactionR00435,R00441,R00442,R00443,R00899,R04951
KEGG Pathwayko00230,ko00240,ko00480,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map00480,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010035,GO:0010038,GO:0010150,GO:0016043,GO:0016787,GO:0016805,GO:0019538,GO:0019904,GO:0022607,GO:0030145,GO:0032501,GO:0032502,GO:0034214,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0046872,GO:0046914,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050896,GO:0051259,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0090693,GO:0097718,GO:0099402,GO:0140096,GO:1901564
Evalue7.82e-138
EggNOG OGsCOG0260@1|root,KOG2597@2759|Eukaryota
EC2.7.7.6,3.4.11.1
Descriptionmanganese ion binding
COG categoryE
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8082Gvermi8082Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 952410..953993 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8082.t1.stop1Gvermi8082.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 952410..952412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8082.t1.CDS1Gvermi8082.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 952410..953993 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8082.t1.exon1Gvermi8082.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 952410..953993 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8082.t1.start1Gvermi8082.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 953991..953993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8082.t1Gvermi8082.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 952410..953993 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8082.t1 ID=Gvermi8082.t1|Name=Gvermi8082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp
MVTATSKDRPGMLDTDKHGSVLIFPRDGRISVEIGSDVGAYSGDLLVLAV
WAPEDDDAEFSLPSSVEKLDPSIVKELGDLVAESEFKAAAGSSTEVLRLA
ASSTRRVALYGLGKKSKGNSSVAGASRFAMQKGMSIKKCKSVAVFVDGAC
TDCVTNAAEGAVVASYVDVRYKKEKKDYEKVPETVELVGIADSDENRKAI
ERGRMIAMGIITTKELVNAPANTLTPETLAAAAQQVADECGLEIKVMGRS
ACQEMGMGLYLGVGRGSADEPKFIHMTYKPKGEVKKKYCIVGKAVTFDTG
GTNLKVGNSMIELMKFDMGGAAVAVGAAKVIGSLKPEGVEVHFIMPAVEN
MIGNNAIHPGDILKAANDKTVEVINTDAEGRLCLADALVYAQELGDVDCI
VDIATLTGAIIVALGNDVAGMWCSSDSLAEKLTESSKAAGEQLWRMPLVD
AYSEGLKSKIADLRNISTNRGGSSITAALFLKEFVETDKCEWAHLDIAGT
VWSKETSAATGFGVKTMAHWVENATAE*
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spliced messenger RNA

>Gvermi8082.t1 ID=Gvermi8082.t1|Name=Gvermi8082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_24226:952410..953993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACGGCCACATCCAAGGACCGACCGGGCATGCTGGACACCGACAA
GCACGGTAGCGTGTTGATATTCCCACGCGACGGGCGCATTTCCGTCGAGA
TCGGCTCCGATGTGGGGGCCTACTCGGGTGATTTGCTCGTGTTGGCGGTC
TGGGCCCCCGAAGATGATGATGCCGAGTTCAGCTTGCCCTCGTCTGTCGA
AAAGCTCGATCCTTCCATTGTGAAGGAGCTCGGCGACCTCGTTGCCGAAT
CTGAGTTCAAGGCCGCGGCGGGTTCGAGTACGGAGGTGTTGCGATTGGCG
GCATCCAGCACGAGGAGGGTGGCATTATACGGCCTCGGAAAGAAGAGCAA
AGGAAATTCTTCTGTGGCAGGCGCTTCGCGATTCGCAATGCAGAAGGGCA
TGTCGATCAAGAAATGCAAGTCCGTTGCCGTGTTTGTGGATGGCGCTTGC
ACGGATTGCGTCACCAACGCAGCGGAGGGTGCGGTCGTCGCCTCTTACGT
AGATGTGCGCTATAAAAAGGAGAAAAAGGACTACGAAAAAGTGCCGGAAA
CGGTTGAGCTTGTGGGCATTGCCGATAGTGATGAAAACCGAAAGGCCATT
GAGAGGGGGCGTATGATTGCCATGGGAATCATCACAACAAAGGAACTTGT
AAATGCGCCCGCGAATACCCTTACACCTGAAACGCTGGCAGCAGCCGCGC
AGCAGGTGGCCGATGAGTGCGGGCTTGAAATCAAGGTAATGGGACGCTCT
GCGTGCCAGGAGATGGGCATGGGATTGTACCTTGGCGTCGGCAGAGGGTC
GGCTGATGAACCAAAGTTCATTCACATGACGTACAAGCCGAAAGGAGAGG
TTAAGAAAAAGTATTGCATCGTGGGAAAGGCAGTCACTTTTGATACCGGT
GGCACCAATCTGAAAGTTGGCAACAGTATGATCGAGCTTATGAAGTTTGA
CATGGGCGGTGCGGCCGTGGCTGTAGGCGCTGCAAAGGTGATCGGCAGTC
TGAAACCGGAGGGCGTTGAAGTTCATTTCATCATGCCCGCGGTTGAAAAC
ATGATTGGGAACAATGCTATTCATCCGGGTGACATTTTGAAGGCTGCGAA
TGACAAGACCGTGGAAGTGATCAACACAGACGCTGAAGGAAGACTATGTC
TCGCGGATGCACTAGTTTACGCGCAAGAGTTAGGCGACGTGGACTGCATC
GTGGATATCGCTACGCTGACCGGGGCTATCATTGTGGCGCTTGGCAACGA
TGTTGCTGGAATGTGGTGCTCCTCGGATAGCCTTGCCGAAAAGCTTACGG
AAAGCAGCAAGGCGGCGGGGGAACAGCTTTGGCGGATGCCTTTGGTTGAC
GCGTACAGCGAAGGTCTCAAGAGTAAGATTGCGGACCTGAGAAACATCTC
TACGAACCGAGGCGGAAGCTCCATCACGGCGGCTCTGTTTCTGAAGGAGT
TTGTGGAGACGGACAAGTGCGAGTGGGCGCATCTGGACATTGCGGGTACT
GTGTGGAGCAAGGAGACGAGCGCTGCGACGGGGTTCGGCGTGAAGACCAT
GGCGCACTGGGTGGAAAACGCAACTGCTGAATGA
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protein sequence of Gvermi8082.t1

>Gvermi8082.t1 ID=Gvermi8082.t1|Name=Gvermi8082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=528bp
MVTATSKDRPGMLDTDKHGSVLIFPRDGRISVEIGSDVGAYSGDLLVLAV
WAPEDDDAEFSLPSSVEKLDPSIVKELGDLVAESEFKAAAGSSTEVLRLA
ASSTRRVALYGLGKKSKGNSSVAGASRFAMQKGMSIKKCKSVAVFVDGAC
TDCVTNAAEGAVVASYVDVRYKKEKKDYEKVPETVELVGIADSDENRKAI
ERGRMIAMGIITTKELVNAPANTLTPETLAAAAQQVADECGLEIKVMGRS
ACQEMGMGLYLGVGRGSADEPKFIHMTYKPKGEVKKKYCIVGKAVTFDTG
GTNLKVGNSMIELMKFDMGGAAVAVGAAKVIGSLKPEGVEVHFIMPAVEN
MIGNNAIHPGDILKAANDKTVEVINTDAEGRLCLADALVYAQELGDVDCI
VDIATLTGAIIVALGNDVAGMWCSSDSLAEKLTESSKAAGEQLWRMPLVD
AYSEGLKSKIADLRNISTNRGGSSITAALFLKEFVETDKCEWAHLDIAGT
VWSKETSAATGFGVKTMAHWVENATAE*
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mRNA from alignment at ScGOVlb_24226:952410..953993-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8082.t1 ID=Gvermi8082.t1|Name=Gvermi8082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1584bp|location=Sequence derived from alignment at ScGOVlb_24226:952410..953993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCACGGCCACATCCAAGGACCGACCGGGCATGCTGGACACCGACAA
GCACGGTAGCGTGTTGATATTCCCACGCGACGGGCGCATTTCCGTCGAGA
TCGGCTCCGATGTGGGGGCCTACTCGGGTGATTTGCTCGTGTTGGCGGTC
TGGGCCCCCGAAGATGATGATGCCGAGTTCAGCTTGCCCTCGTCTGTCGA
AAAGCTCGATCCTTCCATTGTGAAGGAGCTCGGCGACCTCGTTGCCGAAT
CTGAGTTCAAGGCCGCGGCGGGTTCGAGTACGGAGGTGTTGCGATTGGCG
GCATCCAGCACGAGGAGGGTGGCATTATACGGCCTCGGAAAGAAGAGCAA
AGGAAATTCTTCTGTGGCAGGCGCTTCGCGATTCGCAATGCAGAAGGGCA
TGTCGATCAAGAAATGCAAGTCCGTTGCCGTGTTTGTGGATGGCGCTTGC
ACGGATTGCGTCACCAACGCAGCGGAGGGTGCGGTCGTCGCCTCTTACGT
AGATGTGCGCTATAAAAAGGAGAAAAAGGACTACGAAAAAGTGCCGGAAA
CGGTTGAGCTTGTGGGCATTGCCGATAGTGATGAAAACCGAAAGGCCATT
GAGAGGGGGCGTATGATTGCCATGGGAATCATCACAACAAAGGAACTTGT
AAATGCGCCCGCGAATACCCTTACACCTGAAACGCTGGCAGCAGCCGCGC
AGCAGGTGGCCGATGAGTGCGGGCTTGAAATCAAGGTAATGGGACGCTCT
GCGTGCCAGGAGATGGGCATGGGATTGTACCTTGGCGTCGGCAGAGGGTC
GGCTGATGAACCAAAGTTCATTCACATGACGTACAAGCCGAAAGGAGAGG
TTAAGAAAAAGTATTGCATCGTGGGAAAGGCAGTCACTTTTGATACCGGT
GGCACCAATCTGAAAGTTGGCAACAGTATGATCGAGCTTATGAAGTTTGA
CATGGGCGGTGCGGCCGTGGCTGTAGGCGCTGCAAAGGTGATCGGCAGTC
TGAAACCGGAGGGCGTTGAAGTTCATTTCATCATGCCCGCGGTTGAAAAC
ATGATTGGGAACAATGCTATTCATCCGGGTGACATTTTGAAGGCTGCGAA
TGACAAGACCGTGGAAGTGATCAACACAGACGCTGAAGGAAGACTATGTC
TCGCGGATGCACTAGTTTACGCGCAAGAGTTAGGCGACGTGGACTGCATC
GTGGATATCGCTACGCTGACCGGGGCTATCATTGTGGCGCTTGGCAACGA
TGTTGCTGGAATGTGGTGCTCCTCGGATAGCCTTGCCGAAAAGCTTACGG
AAAGCAGCAAGGCGGCGGGGGAACAGCTTTGGCGGATGCCTTTGGTTGAC
GCGTACAGCGAAGGTCTCAAGAGTAAGATTGCGGACCTGAGAAACATCTC
TACGAACCGAGGCGGAAGCTCCATCACGGCGGCTCTGTTTCTGAAGGAGT
TTGTGGAGACGGACAAGTGCGAGTGGGCGCATCTGGACATTGCGGGTACT
GTGTGGAGCAAGGAGACGAGCGCTGCGACGGGGTTCGGCGTGAAGACCAT
GGCGCACTGGGTGGAAAACGCAACTGCTGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:952410..953993-

>Gvermi8082.t1 ID=Gvermi8082.t1|Name=Gvermi8082.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1584bp|location=Sequence derived from alignment at ScGOVlb_24226:952410..953993- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCACGGCCACATCCAAGGACCGACCGGGCATGCTGGACACCGACAA
GCACGGTAGCGTGTTGATATTCCCACGCGACGGGCGCATTTCCGTCGAGA
TCGGCTCCGATGTGGGGGCCTACTCGGGTGATTTGCTCGTGTTGGCGGTC
TGGGCCCCCGAAGATGATGATGCCGAGTTCAGCTTGCCCTCGTCTGTCGA
AAAGCTCGATCCTTCCATTGTGAAGGAGCTCGGCGACCTCGTTGCCGAAT
CTGAGTTCAAGGCCGCGGCGGGTTCGAGTACGGAGGTGTTGCGATTGGCG
GCATCCAGCACGAGGAGGGTGGCATTATACGGCCTCGGAAAGAAGAGCAA
AGGAAATTCTTCTGTGGCAGGCGCTTCGCGATTCGCAATGCAGAAGGGCA
TGTCGATCAAGAAATGCAAGTCCGTTGCCGTGTTTGTGGATGGCGCTTGC
ACGGATTGCGTCACCAACGCAGCGGAGGGTGCGGTCGTCGCCTCTTACGT
AGATGTGCGCTATAAAAAGGAGAAAAAGGACTACGAAAAAGTGCCGGAAA
CGGTTGAGCTTGTGGGCATTGCCGATAGTGATGAAAACCGAAAGGCCATT
GAGAGGGGGCGTATGATTGCCATGGGAATCATCACAACAAAGGAACTTGT
AAATGCGCCCGCGAATACCCTTACACCTGAAACGCTGGCAGCAGCCGCGC
AGCAGGTGGCCGATGAGTGCGGGCTTGAAATCAAGGTAATGGGACGCTCT
GCGTGCCAGGAGATGGGCATGGGATTGTACCTTGGCGTCGGCAGAGGGTC
GGCTGATGAACCAAAGTTCATTCACATGACGTACAAGCCGAAAGGAGAGG
TTAAGAAAAAGTATTGCATCGTGGGAAAGGCAGTCACTTTTGATACCGGT
GGCACCAATCTGAAAGTTGGCAACAGTATGATCGAGCTTATGAAGTTTGA
CATGGGCGGTGCGGCCGTGGCTGTAGGCGCTGCAAAGGTGATCGGCAGTC
TGAAACCGGAGGGCGTTGAAGTTCATTTCATCATGCCCGCGGTTGAAAAC
ATGATTGGGAACAATGCTATTCATCCGGGTGACATTTTGAAGGCTGCGAA
TGACAAGACCGTGGAAGTGATCAACACAGACGCTGAAGGAAGACTATGTC
TCGCGGATGCACTAGTTTACGCGCAAGAGTTAGGCGACGTGGACTGCATC
GTGGATATCGCTACGCTGACCGGGGCTATCATTGTGGCGCTTGGCAACGA
TGTTGCTGGAATGTGGTGCTCCTCGGATAGCCTTGCCGAAAAGCTTACGG
AAAGCAGCAAGGCGGCGGGGGAACAGCTTTGGCGGATGCCTTTGGTTGAC
GCGTACAGCGAAGGTCTCAAGAGTAAGATTGCGGACCTGAGAAACATCTC
TACGAACCGAGGCGGAAGCTCCATCACGGCGGCTCTGTTTCTGAAGGAGT
TTGTGGAGACGGACAAGTGCGAGTGGGCGCATCTGGACATTGCGGGTACT
GTGTGGAGCAAGGAGACGAGCGCTGCGACGGGGTTCGGCGTGAAGACCAT
GGCGCACTGGGTGGAAAACGCAACTGCTGAATGA
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