Gvermi4226.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4226.t1
Unique NameGvermi4226.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length232
Homology
[Close]
BLAST of Gvermi4226.t1 vs. uniprot
Match: A0A2V3J173_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J173_9FLOR)

HSP 1 Score: 298 bits (762), Expect = 1.350e-99
Identity = 148/229 (64.63%), Postives = 179/229 (78.17%), Query Frame = 0 
Query:    1 MYPALCTVFLSLVTAAVLTAVLAAYAFISMRVSIFQFHWTPVMLMLTHVSLLALVAVMPLTLLALLLWCVCPSYRRAAVCKGLYICGLLLTALVLAAAMAAAIFVIYGASQKRSYFALELRRAWDRELSADTTLPCQIQFQLACHGFETGDCQRGSATQNYARCGTNCLPEHQQGKPRFNLERYPGCRQAMSAVFIRWNAILLAGSTTAFILSLIAVFFTCTSVSFEKE 229
            MYP LCTVFLSLV +A +  V  AY+FISMR+SIF F W  ++ ++TH+S L ++A   L LLA++LWCVC S+RRA  CK +Y+  LL TA  LA +MA AI VIYGAS K S+FA EL++AW+ E+   TTLPCQIQFQL CHGFE GDCQ+GS TQN+ RCGT CLPEH   KP+FN+ERYPGCR  MS VFI+WNAILLAG+T AF+LSL+A FFTCTSVSFEK+
Sbjct:    1 MYPGLCTVFLSLVVSATIATVFGAYSFISMRLSIFDFRWNTLIFVVTHISFLTIMAAPLLLLLAMVLWCVCTSHRRAVACKSVYVLMLLFTAAALAVSMAGAIIVIYGASHKGSFFARELKKAWNSEIRRQTTLPCQIQFQLGCHGFEEGDCQKGSVTQNFRRCGTTCLPEHLPAKPQFNIERYPGCRAKMSDVFIQWNAILLAGATVAFVLSLVAAFFTCTSVSFEKD 229
The following BLAST results are available for this feature:
BLAST of Gvermi4226.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J173_9FLOR1.350e-9964.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 227..231
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..200
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 50..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 83..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 201..226
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..82
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..22
NoneNo IPR availableTMHMMTMhelixcoord: 84..106
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 200..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:795030..795725 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4226.t1Gvermi4226.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 795030..795725 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4226.t1 ID=Gvermi4226.t1|Name=Gvermi4226.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=232bp
MYPALCTVFLSLVTAAVLTAVLAAYAFISMRVSIFQFHWTPVMLMLTHVS
LLALVAVMPLTLLALLLWCVCPSYRRAAVCKGLYICGLLLTALVLAAAMA
AAIFVIYGASQKRSYFALELRRAWDRELSADTTLPCQIQFQLACHGFETG
DCQRGSATQNYARCGTNCLPEHQQGKPRFNLERYPGCRQAMSAVFIRWNA
ILLAGSTTAFILSLIAVFFTCTSVSFEKEDK*
back to top