Gvermi8047.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8047.t1
Unique NameGvermi8047.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:877933..878418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4533.OB11G20010.1
PFAMsSHMT
Max annot lvl35493|Streptophyta
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Evalue2.64e-34
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota,37KTU@33090|Viridiplantae,3GBR5@35493|Streptophyta,3KKZF@4447|Liliopsida,3IGCS@38820|Poales
EC2.1.2.1
DescriptionInterconversion of serine and glycine
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8047Gvermi8047Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 877933..878418 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1.start1Gvermi8047.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 877933..877935 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1.CDS1Gvermi8047.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 877933..878418 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1.exon1Gvermi8047.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 877933..878418 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1.stop1Gvermi8047.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 878416..878418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8047.t1Gvermi8047.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 877933..878418 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=162bp
MQSRVAMSPEPLTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTS
SVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDS
SPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR
ACLPPAFNLRV*
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spliced messenger RNA

>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_24226:877933..878418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGCAGGGTCGCCATGAGCCCCGAGCCGCTCACCGACAACCTTCC
GCTCAGCCAGCAAGCCCCCCAAATTCATCGCTTGCTGCAGCAAGAAATGT
CAGGGCAGTGGCATAACCTGGAACTCGTTACCTTCGAGAACTTCACGTCC
TCCGTCGTCCTCTACTGTATGGGTACCATCTTCACCAAGAAGTACTCGGA
GTGCTACCCCGCTGCGCGTTTCTACGATGTTAATCAAGTTGTTGCCCAGG
TGCAGCACATGTGCAGAGATTGCGCTCTGGCTGCCTTCCACTATGACTCC
AGTCCCTGGGCCGTCAACGTGCAGCTCTACTCCAGATCGGTGGCCAACTT
CACGTCGTACACGACACTGTTCAACCCACAAAACTGCATCCTGGGGCCAG
AGCTTTTCAGCGGTTGCCACCTGACTCACATGTTTTACACACCCAAGAGG
GCGTGTCTTCCACCAGCATTTAATTTGAGAGTCTGA
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protein sequence of Gvermi8047.t1

>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=162bp
MQSRVAMSPEPLTDNLPLSQQAPQIHRLLQQEMSGQWHNLELVTFENFTS
SVVLYCMGTIFTKKYSECYPAARFYDVNQVVAQVQHMCRDCALAAFHYDS
SPWAVNVQLYSRSVANFTSYTTLFNPQNCILGPELFSGCHLTHMFYTPKR
ACLPPAFNLRV*
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mRNA from alignment at ScGOVlb_24226:877933..878418+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=486bp|location=Sequence derived from alignment at ScGOVlb_24226:877933..878418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGCAGGGTCGCCATGAGCCCCGAGCCGCTCACCGACAACCTTCC
GCTCAGCCAGCAAGCCCCCCAAATTCATCGCTTGCTGCAGCAAGAAATGT
CAGGGCAGTGGCATAACCTGGAACTCGTTACCTTCGAGAACTTCACGTCC
TCCGTCGTCCTCTACTGTATGGGTACCATCTTCACCAAGAAGTACTCGGA
GTGCTACCCCGCTGCGCGTTTCTACGATGTTAATCAAGTTGTTGCCCAGG
TGCAGCACATGTGCAGAGATTGCGCTCTGGCTGCCTTCCACTATGACTCC
AGTCCCTGGGCCGTCAACGTGCAGCTCTACTCCAGATCGGTGGCCAACTT
CACGTCGTACACGACACTGTTCAACCCACAAAACTGCATCCTGGGGCCAG
AGCTTTTCAGCGGTTGCCACCTGACTCACATGTTTTACACACCCAAGAGG
GCGTGTCTTCCACCAGCATTTAATTTGAGAGTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:877933..878418+

>Gvermi8047.t1 ID=Gvermi8047.t1|Name=Gvermi8047.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=486bp|location=Sequence derived from alignment at ScGOVlb_24226:877933..878418+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGCAGGGTCGCCATGAGCCCCGAGCCGCTCACCGACAACCTTCC
GCTCAGCCAGCAAGCCCCCCAAATTCATCGCTTGCTGCAGCAAGAAATGT
CAGGGCAGTGGCATAACCTGGAACTCGTTACCTTCGAGAACTTCACGTCC
TCCGTCGTCCTCTACTGTATGGGTACCATCTTCACCAAGAAGTACTCGGA
GTGCTACCCCGCTGCGCGTTTCTACGATGTTAATCAAGTTGTTGCCCAGG
TGCAGCACATGTGCAGAGATTGCGCTCTGGCTGCCTTCCACTATGACTCC
AGTCCCTGGGCCGTCAACGTGCAGCTCTACTCCAGATCGGTGGCCAACTT
CACGTCGTACACGACACTGTTCAACCCACAAAACTGCATCCTGGGGCCAG
AGCTTTTCAGCGGTTGCCACCTGACTCACATGTTTTACACACCCAAGAGG
GCGTGTCTTCCACCAGCATTTAATTTGAGAGTCTGA
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