Gvermi8015.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8015.t1
Unique NameGvermi8015.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length302
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:668468..669373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_77004
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15104
KEGG TC2.A.29.2.1,2.A.29.2.9
Evalue4.93e-81
EggNOG OGsKOG0759@1|root,KOG0759@2759|Eukaryota
Descriptionthiosulfate transmembrane transporter activity
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8015Gvermi8015Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 668468..669373 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8015.t1.stop1Gvermi8015.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 668468..668470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8015.t1.CDS1Gvermi8015.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 668468..669373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8015.t1.exon1Gvermi8015.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 668468..669373 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8015.t1.start1Gvermi8015.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 669371..669373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8015.t1Gvermi8015.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 668468..669373 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8015.t1 ID=Gvermi8015.t1|Name=Gvermi8015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=302bp
MTATVAHQRKNNLSVLPFVRGGISGVLSWLVIHPADVVKVRMQIAGEGTK
QTPYKGFIQAARLISNSEGVGALYSGLSAALTRQISYTTLRLGLYSSLRD
HYVKDGNSISMATKFAIGTAAGGIASAISTPVEVSMVRMYSDGAAEASKR
RGYRNIFDALWRIARDEGIPGLWRGATPTVTRSMVANCVQLGTYDQAKEA
FSDTGIQVLQDGVPLHLAASITSGFCYSVVTLPIDSAKTRVQNQRPINGV
MPYRNLFHAMVKVANLEGLSALWKGFSPYFSRCAGHTVVMFLVLEQVKKV
L*
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spliced messenger RNA

>Gvermi8015.t1 ID=Gvermi8015.t1|Name=Gvermi8015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_24226:668468..669373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCAACGGTTGCACATCAGAGGAAGAATAATCTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTCTCGTGGCTCGTCATTCACC
CTGCCGATGTAGTTAAGGTGCGAATGCAGATCGCTGGGGAAGGAACCAAG
CAAACCCCGTACAAGGGTTTCATACAGGCTGCGCGCCTCATATCCAACTC
TGAGGGCGTCGGTGCATTGTATTCAGGTTTGTCAGCCGCCCTTACCCGCC
AGATCTCTTACACTACACTACGACTCGGCTTGTATTCCAGCCTGCGAGAT
CATTATGTCAAAGACGGAAACTCGATATCCATGGCCACAAAGTTTGCCAT
CGGGACTGCTGCTGGAGGTATAGCAAGTGCGATATCTACACCTGTGGAAG
TGTCGATGGTGCGCATGTACAGCGATGGGGCCGCCGAGGCATCAAAGAGG
CGTGGCTATCGAAACATCTTTGATGCCCTGTGGCGAATTGCGAGAGACGA
GGGCATTCCCGGATTGTGGAGAGGGGCCACCCCAACTGTCACCAGAAGCA
TGGTTGCAAACTGTGTGCAGCTTGGAACATATGATCAAGCAAAAGAAGCC
TTCAGTGATACCGGAATCCAAGTTCTTCAAGACGGCGTTCCTCTTCATTT
GGCAGCCTCCATCACATCTGGGTTTTGTTATTCGGTTGTCACCCTTCCAA
TCGACTCGGCAAAGACTCGCGTACAAAACCAGCGCCCTATAAATGGCGTT
ATGCCGTACCGCAACTTGTTTCACGCCATGGTTAAGGTTGCGAACTTAGA
AGGGCTGTCTGCACTTTGGAAAGGATTCAGCCCCTACTTTTCACGATGCG
CTGGTCACACAGTGGTCATGTTCTTGGTTTTAGAACAAGTCAAGAAGGTT
TTGTAA
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protein sequence of Gvermi8015.t1

>Gvermi8015.t1 ID=Gvermi8015.t1|Name=Gvermi8015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=302bp
MTATVAHQRKNNLSVLPFVRGGISGVLSWLVIHPADVVKVRMQIAGEGTK
QTPYKGFIQAARLISNSEGVGALYSGLSAALTRQISYTTLRLGLYSSLRD
HYVKDGNSISMATKFAIGTAAGGIASAISTPVEVSMVRMYSDGAAEASKR
RGYRNIFDALWRIARDEGIPGLWRGATPTVTRSMVANCVQLGTYDQAKEA
FSDTGIQVLQDGVPLHLAASITSGFCYSVVTLPIDSAKTRVQNQRPINGV
MPYRNLFHAMVKVANLEGLSALWKGFSPYFSRCAGHTVVMFLVLEQVKKV
L*
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mRNA from alignment at ScGOVlb_24226:668468..669373-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8015.t1 ID=Gvermi8015.t1|Name=Gvermi8015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_24226:668468..669373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCAACGGTTGCACATCAGAGGAAGAATAATCTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTCTCGTGGCTCGTCATTCACC
CTGCCGATGTAGTTAAGGTGCGAATGCAGATCGCTGGGGAAGGAACCAAG
CAAACCCCGTACAAGGGTTTCATACAGGCTGCGCGCCTCATATCCAACTC
TGAGGGCGTCGGTGCATTGTATTCAGGTTTGTCAGCCGCCCTTACCCGCC
AGATCTCTTACACTACACTACGACTCGGCTTGTATTCCAGCCTGCGAGAT
CATTATGTCAAAGACGGAAACTCGATATCCATGGCCACAAAGTTTGCCAT
CGGGACTGCTGCTGGAGGTATAGCAAGTGCGATATCTACACCTGTGGAAG
TGTCGATGGTGCGCATGTACAGCGATGGGGCCGCCGAGGCATCAAAGAGG
CGTGGCTATCGAAACATCTTTGATGCCCTGTGGCGAATTGCGAGAGACGA
GGGCATTCCCGGATTGTGGAGAGGGGCCACCCCAACTGTCACCAGAAGCA
TGGTTGCAAACTGTGTGCAGCTTGGAACATATGATCAAGCAAAAGAAGCC
TTCAGTGATACCGGAATCCAAGTTCTTCAAGACGGCGTTCCTCTTCATTT
GGCAGCCTCCATCACATCTGGGTTTTGTTATTCGGTTGTCACCCTTCCAA
TCGACTCGGCAAAGACTCGCGTACAAAACCAGCGCCCTATAAATGGCGTT
ATGCCGTACCGCAACTTGTTTCACGCCATGGTTAAGGTTGCGAACTTAGA
AGGGCTGTCTGCACTTTGGAAAGGATTCAGCCCCTACTTTTCACGATGCG
CTGGTCACACAGTGGTCATGTTCTTGGTTTTAGAACAAGTCAAGAAGGTT
TTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:668468..669373-

>Gvermi8015.t1 ID=Gvermi8015.t1|Name=Gvermi8015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=906bp|location=Sequence derived from alignment at ScGOVlb_24226:668468..669373- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCAACGGTTGCACATCAGAGGAAGAATAATCTTTCCGTGCTTCC
ATTTGTGCGGGGTGGAATTTCTGGAGTTCTCTCGTGGCTCGTCATTCACC
CTGCCGATGTAGTTAAGGTGCGAATGCAGATCGCTGGGGAAGGAACCAAG
CAAACCCCGTACAAGGGTTTCATACAGGCTGCGCGCCTCATATCCAACTC
TGAGGGCGTCGGTGCATTGTATTCAGGTTTGTCAGCCGCCCTTACCCGCC
AGATCTCTTACACTACACTACGACTCGGCTTGTATTCCAGCCTGCGAGAT
CATTATGTCAAAGACGGAAACTCGATATCCATGGCCACAAAGTTTGCCAT
CGGGACTGCTGCTGGAGGTATAGCAAGTGCGATATCTACACCTGTGGAAG
TGTCGATGGTGCGCATGTACAGCGATGGGGCCGCCGAGGCATCAAAGAGG
CGTGGCTATCGAAACATCTTTGATGCCCTGTGGCGAATTGCGAGAGACGA
GGGCATTCCCGGATTGTGGAGAGGGGCCACCCCAACTGTCACCAGAAGCA
TGGTTGCAAACTGTGTGCAGCTTGGAACATATGATCAAGCAAAAGAAGCC
TTCAGTGATACCGGAATCCAAGTTCTTCAAGACGGCGTTCCTCTTCATTT
GGCAGCCTCCATCACATCTGGGTTTTGTTATTCGGTTGTCACCCTTCCAA
TCGACTCGGCAAAGACTCGCGTACAAAACCAGCGCCCTATAAATGGCGTT
ATGCCGTACCGCAACTTGTTTCACGCCATGGTTAAGGTTGCGAACTTAGA
AGGGCTGTCTGCACTTTGGAAAGGATTCAGCCCCTACTTTTCACGATGCG
CTGGTCACACAGTGGTCATGTTCTTGGTTTTAGAACAAGTCAAGAAGGTT
TTGTAA
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