Gvermi8027.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8027.t1
Unique NameGvermi8027.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:725511..726935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173028.ANKO01000174_gene2669
PFAMsAmidohydro_2
Max annot lvl1117|Cyanobacteria
Evalue5.39e-67
EggNOG OGsCOG2159@1|root,COG2159@2|Bacteria,1G2HJ@1117|Cyanobacteria,1H9XN@1150|Oscillatoriales
DescriptionAmidohydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8027Gvermi8027Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 725511..726935 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8027.t1.stop1Gvermi8027.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 725511..725513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8027.t1.CDS1Gvermi8027.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 725511..726935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8027.t1.exon1Gvermi8027.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 725511..726935 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8027.t1.start1Gvermi8027.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 726933..726935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8027.t1Gvermi8027.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 725511..726935 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8027.t1 ID=Gvermi8027.t1|Name=Gvermi8027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp
MDLSAHSVTQTAVYSELEAVADATLLVDNHAHPLSRTPPRRLSSILTEAA
TTSLDPYPASATLAYNRAIRDISALLEHETEQASDVRQASLPVELVPPQP
QSPSSPETPTPVTQSEQSACDEEDVAFDGSAPEHKALEQRRTALGVVRLA
KRCFSAAGIAAILVDDGLDMPEKVSLAEMSAFGVPLVRRVLRVEVEAESV
IRELVKENKHGVWRRASRPSSPEKRARTTIRAAMFLERLRERFSPLQQGV
VAFKSIAAYRSGLNIHLHCSDEQLDEKLQVTANAVVNTPQDHPFVRLASK
EIIGRVVRLALEVADQHDIPIQFHCGFGDTDLRLEDANPLLLKPTLESYP
SVKIVILHAAWPYVREAAYLTSVFRNCYLDFGLAIPLLSVRGMFRALDSA
MEAAPVSRLLYSSDAHTVPDAFYLGARWGRRVVAAAVSANVQSGDLTVAE
GKAAVRKILADNAIALYRLPVQSS*
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spliced messenger RNA

>Gvermi8027.t1 ID=Gvermi8027.t1|Name=Gvermi8027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:725511..726935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCTCAGCCCACTCCGTAACGCAGACGGCAGTCTACTCAGAACT
TGAAGCCGTTGCCGATGCCACGCTGTTGGTCGATAACCATGCACACCCAT
TGAGTCGAACACCCCCTCGTCGGTTGTCCAGCATATTAACAGAAGCGGCT
ACGACCTCGCTCGATCCGTATCCAGCGAGTGCTACTTTGGCATACAATCG
CGCCATACGCGACATATCTGCGCTTTTGGAACACGAAACTGAGCAAGCAT
CAGATGTTAGACAAGCTTCCCTGCCTGTCGAGCTGGTGCCGCCACAACCG
CAAAGCCCATCCTCTCCCGAGACGCCGACGCCCGTGACTCAATCTGAACA
GAGTGCGTGTGACGAGGAAGACGTCGCGTTTGACGGTTCGGCGCCCGAAC
ATAAGGCTTTAGAACAACGTCGCACTGCTCTCGGTGTGGTACGCCTTGCC
AAAAGATGCTTCTCCGCGGCTGGAATAGCTGCCATTTTGGTCGATGATGG
TCTTGACATGCCGGAAAAGGTGTCACTCGCGGAGATGAGCGCGTTTGGAG
TGCCGCTCGTGCGAAGGGTGTTGCGTGTAGAGGTAGAGGCAGAGTCCGTT
ATCAGGGAGCTTGTCAAAGAAAATAAACACGGGGTGTGGAGAAGAGCAAG
TAGACCGTCATCTCCTGAGAAGAGAGCACGAACGACAATCAGAGCCGCAA
TGTTTCTCGAAAGACTGAGAGAGCGTTTTTCTCCTCTGCAACAGGGGGTA
GTCGCTTTCAAAAGTATTGCAGCATATCGCTCTGGTTTGAACATTCATCT
CCACTGCTCCGACGAACAATTAGATGAAAAGTTGCAAGTGACAGCCAACG
CGGTGGTAAACACACCGCAAGATCATCCTTTTGTCCGCTTGGCAAGCAAA
GAGATCATTGGTCGCGTTGTGCGATTGGCTCTCGAAGTTGCAGATCAACA
TGACATACCAATTCAATTTCACTGCGGTTTCGGTGATACCGACTTGAGAC
TGGAAGATGCAAATCCTTTGCTTTTGAAACCAACGCTTGAAAGCTACCCA
AGCGTGAAGATTGTGATCCTGCATGCAGCTTGGCCTTACGTACGAGAAGC
TGCCTATCTGACATCCGTATTTCGCAACTGCTATCTTGATTTCGGGCTTG
CCATCCCTTTGCTGTCTGTACGAGGGATGTTTCGAGCGCTTGACAGTGCA
ATGGAGGCCGCACCAGTATCAAGATTGTTATACTCTAGCGATGCTCATAC
AGTTCCTGATGCGTTCTATCTCGGAGCTCGATGGGGGAGGCGGGTAGTTG
CCGCGGCAGTATCTGCCAATGTTCAGTCAGGGGACCTGACCGTTGCTGAG
GGAAAGGCTGCTGTACGGAAAATTTTGGCGGACAATGCCATTGCGTTGTA
CAGGCTACCAGTTCAGTCCAGCTGA
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protein sequence of Gvermi8027.t1

>Gvermi8027.t1 ID=Gvermi8027.t1|Name=Gvermi8027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=475bp
MDLSAHSVTQTAVYSELEAVADATLLVDNHAHPLSRTPPRRLSSILTEAA
TTSLDPYPASATLAYNRAIRDISALLEHETEQASDVRQASLPVELVPPQP
QSPSSPETPTPVTQSEQSACDEEDVAFDGSAPEHKALEQRRTALGVVRLA
KRCFSAAGIAAILVDDGLDMPEKVSLAEMSAFGVPLVRRVLRVEVEAESV
IRELVKENKHGVWRRASRPSSPEKRARTTIRAAMFLERLRERFSPLQQGV
VAFKSIAAYRSGLNIHLHCSDEQLDEKLQVTANAVVNTPQDHPFVRLASK
EIIGRVVRLALEVADQHDIPIQFHCGFGDTDLRLEDANPLLLKPTLESYP
SVKIVILHAAWPYVREAAYLTSVFRNCYLDFGLAIPLLSVRGMFRALDSA
MEAAPVSRLLYSSDAHTVPDAFYLGARWGRRVVAAAVSANVQSGDLTVAE
GKAAVRKILADNAIALYRLPVQSS*
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mRNA from alignment at ScGOVlb_24226:725511..726935-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8027.t1 ID=Gvermi8027.t1|Name=Gvermi8027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:725511..726935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCTCTCAGCCCACTCCGTAACGCAGACGGCAGTCTACTCAGAACT
TGAAGCCGTTGCCGATGCCACGCTGTTGGTCGATAACCATGCACACCCAT
TGAGTCGAACACCCCCTCGTCGGTTGTCCAGCATATTAACAGAAGCGGCT
ACGACCTCGCTCGATCCGTATCCAGCGAGTGCTACTTTGGCATACAATCG
CGCCATACGCGACATATCTGCGCTTTTGGAACACGAAACTGAGCAAGCAT
CAGATGTTAGACAAGCTTCCCTGCCTGTCGAGCTGGTGCCGCCACAACCG
CAAAGCCCATCCTCTCCCGAGACGCCGACGCCCGTGACTCAATCTGAACA
GAGTGCGTGTGACGAGGAAGACGTCGCGTTTGACGGTTCGGCGCCCGAAC
ATAAGGCTTTAGAACAACGTCGCACTGCTCTCGGTGTGGTACGCCTTGCC
AAAAGATGCTTCTCCGCGGCTGGAATAGCTGCCATTTTGGTCGATGATGG
TCTTGACATGCCGGAAAAGGTGTCACTCGCGGAGATGAGCGCGTTTGGAG
TGCCGCTCGTGCGAAGGGTGTTGCGTGTAGAGGTAGAGGCAGAGTCCGTT
ATCAGGGAGCTTGTCAAAGAAAATAAACACGGGGTGTGGAGAAGAGCAAG
TAGACCGTCATCTCCTGAGAAGAGAGCACGAACGACAATCAGAGCCGCAA
TGTTTCTCGAAAGACTGAGAGAGCGTTTTTCTCCTCTGCAACAGGGGGTA
GTCGCTTTCAAAAGTATTGCAGCATATCGCTCTGGTTTGAACATTCATCT
CCACTGCTCCGACGAACAATTAGATGAAAAGTTGCAAGTGACAGCCAACG
CGGTGGTAAACACACCGCAAGATCATCCTTTTGTCCGCTTGGCAAGCAAA
GAGATCATTGGTCGCGTTGTGCGATTGGCTCTCGAAGTTGCAGATCAACA
TGACATACCAATTCAATTTCACTGCGGTTTCGGTGATACCGACTTGAGAC
TGGAAGATGCAAATCCTTTGCTTTTGAAACCAACGCTTGAAAGCTACCCA
AGCGTGAAGATTGTGATCCTGCATGCAGCTTGGCCTTACGTACGAGAAGC
TGCCTATCTGACATCCGTATTTCGCAACTGCTATCTTGATTTCGGGCTTG
CCATCCCTTTGCTGTCTGTACGAGGGATGTTTCGAGCGCTTGACAGTGCA
ATGGAGGCCGCACCAGTATCAAGATTGTTATACTCTAGCGATGCTCATAC
AGTTCCTGATGCGTTCTATCTCGGAGCTCGATGGGGGAGGCGGGTAGTTG
CCGCGGCAGTATCTGCCAATGTTCAGTCAGGGGACCTGACCGTTGCTGAG
GGAAAGGCTGCTGTACGGAAAATTTTGGCGGACAATGCCATTGCGTTGTA
CAGGCTACCAGTTCAGTCCAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:725511..726935-

>Gvermi8027.t1 ID=Gvermi8027.t1|Name=Gvermi8027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1425bp|location=Sequence derived from alignment at ScGOVlb_24226:725511..726935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCTCTCAGCCCACTCCGTAACGCAGACGGCAGTCTACTCAGAACT
TGAAGCCGTTGCCGATGCCACGCTGTTGGTCGATAACCATGCACACCCAT
TGAGTCGAACACCCCCTCGTCGGTTGTCCAGCATATTAACAGAAGCGGCT
ACGACCTCGCTCGATCCGTATCCAGCGAGTGCTACTTTGGCATACAATCG
CGCCATACGCGACATATCTGCGCTTTTGGAACACGAAACTGAGCAAGCAT
CAGATGTTAGACAAGCTTCCCTGCCTGTCGAGCTGGTGCCGCCACAACCG
CAAAGCCCATCCTCTCCCGAGACGCCGACGCCCGTGACTCAATCTGAACA
GAGTGCGTGTGACGAGGAAGACGTCGCGTTTGACGGTTCGGCGCCCGAAC
ATAAGGCTTTAGAACAACGTCGCACTGCTCTCGGTGTGGTACGCCTTGCC
AAAAGATGCTTCTCCGCGGCTGGAATAGCTGCCATTTTGGTCGATGATGG
TCTTGACATGCCGGAAAAGGTGTCACTCGCGGAGATGAGCGCGTTTGGAG
TGCCGCTCGTGCGAAGGGTGTTGCGTGTAGAGGTAGAGGCAGAGTCCGTT
ATCAGGGAGCTTGTCAAAGAAAATAAACACGGGGTGTGGAGAAGAGCAAG
TAGACCGTCATCTCCTGAGAAGAGAGCACGAACGACAATCAGAGCCGCAA
TGTTTCTCGAAAGACTGAGAGAGCGTTTTTCTCCTCTGCAACAGGGGGTA
GTCGCTTTCAAAAGTATTGCAGCATATCGCTCTGGTTTGAACATTCATCT
CCACTGCTCCGACGAACAATTAGATGAAAAGTTGCAAGTGACAGCCAACG
CGGTGGTAAACACACCGCAAGATCATCCTTTTGTCCGCTTGGCAAGCAAA
GAGATCATTGGTCGCGTTGTGCGATTGGCTCTCGAAGTTGCAGATCAACA
TGACATACCAATTCAATTTCACTGCGGTTTCGGTGATACCGACTTGAGAC
TGGAAGATGCAAATCCTTTGCTTTTGAAACCAACGCTTGAAAGCTACCCA
AGCGTGAAGATTGTGATCCTGCATGCAGCTTGGCCTTACGTACGAGAAGC
TGCCTATCTGACATCCGTATTTCGCAACTGCTATCTTGATTTCGGGCTTG
CCATCCCTTTGCTGTCTGTACGAGGGATGTTTCGAGCGCTTGACAGTGCA
ATGGAGGCCGCACCAGTATCAAGATTGTTATACTCTAGCGATGCTCATAC
AGTTCCTGATGCGTTCTATCTCGGAGCTCGATGGGGGAGGCGGGTAGTTG
CCGCGGCAGTATCTGCCAATGTTCAGTCAGGGGACCTGACCGTTGCTGAG
GGAAAGGCTGCTGTACGGAAAATTTTGGCGGACAATGCCATTGCGTTGTA
CAGGCTACCAGTTCAGTCCAGCTGA
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