Gvermi8139.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8139.t1
Unique NameGvermi8139.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1210571..1211854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SGW5
PFAMsNa_H_Exchanger
Max annot lvl2836|Bacillariophyta
Evalue3.1e-44
EggNOG OGsCOG0475@1|root,KOG1650@2759|Eukaryota,2XB5T@2836|Bacillariophyta
DescriptionSodium/hydrogen exchanger family
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8139Gvermi8139Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1210571..1211854 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8139.t1.stop1Gvermi8139.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1210571..1210573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8139.t1.CDS1Gvermi8139.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1210571..1211854 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8139.t1.exon1Gvermi8139.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1210571..1211854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8139.t1.start1Gvermi8139.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1211852..1211854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8139.t1Gvermi8139.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1210571..1211854 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8139.t1 ID=Gvermi8139.t1|Name=Gvermi8139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=428bp
MESEKDLVHLGLFFASTYVGGEIACFLGASPIVMYIAIGALMGPPLANFV
PIYSGLQLAGLLGILLSVVDAGLGTDLEDLKKSIARALLVAFLGVAFPIA
GAVLIICVTHETEGEFHVSRSLKTAFAVGSAIAPTSLGVTARLLQEIGEL
ETKLGQLISVAAVFDDVISLILLSQVVAVAAPAPSVWNLLQPVVYSLIFI
VGATTLANILPLLLPTLWIKAGLPERYYRQAGLWLLLLLVIAITYLAYKA
RTSFLLGGYLVGIAFAQIPPSIARDPWKRSAAIYIEWLSILFFAATIGFV
IPLKELFSKSAIGLGALLAMSSVFGKMMCGLGLFPNKVDGIATAIAMLGR
GEFGFLIASQAQASGLLSQRMYAATTWGILVPTILAPIVFKPVFRWRSSR
QENSVPASPDVSSGHTNDIRSSEQPDS*
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spliced messenger RNA

>Gvermi8139.t1 ID=Gvermi8139.t1|Name=Gvermi8139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24226:1210571..1211854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCTGAGAAAGATCTCGTACACCTAGGATTATTTTTTGCCAGTAC
ATATGTCGGTGGAGAAATAGCATGTTTTCTTGGTGCGTCACCGATCGTAA
TGTACATTGCCATTGGTGCGCTCATGGGTCCACCACTCGCAAACTTCGTT
CCAATTTATTCGGGCCTCCAGCTCGCAGGCTTGCTGGGCATTCTTTTAAG
CGTCGTGGATGCTGGTCTTGGTACAGATCTCGAAGACTTGAAGAAAAGTA
TTGCACGAGCTTTATTAGTGGCTTTTCTAGGTGTTGCGTTCCCAATCGCC
GGGGCTGTATTGATTATATGCGTCACTCACGAGACAGAAGGCGAATTTCA
CGTCTCACGTTCTTTGAAAACTGCTTTTGCCGTAGGCTCTGCGATTGCTC
CAACTTCCCTTGGAGTGACAGCTAGACTTTTACAAGAAATTGGAGAGCTG
GAAACAAAACTAGGTCAACTTATCTCTGTGGCGGCAGTGTTCGACGATGT
GATAAGTCTCATACTTTTGTCACAGGTAGTGGCTGTTGCCGCTCCGGCAC
CAAGTGTTTGGAATCTCTTGCAACCTGTAGTCTACTCGCTGATCTTCATA
GTAGGGGCAACGACCCTGGCCAATATTCTACCGTTGCTTCTACCCACGTT
GTGGATAAAAGCCGGGCTTCCTGAACGATACTACCGACAAGCTGGCTTGT
GGCTTCTTTTGCTCTTAGTGATAGCAATAACTTATTTGGCTTACAAAGCG
AGAACGAGCTTCTTACTCGGAGGTTACCTGGTCGGCATCGCTTTTGCACA
AATTCCACCATCTATCGCGAGAGACCCATGGAAACGTTCGGCAGCCATCT
ATATTGAGTGGTTATCTATTCTCTTTTTTGCAGCTACCATTGGGTTCGTC
ATTCCTTTGAAGGAGCTATTTTCCAAAAGCGCCATTGGGCTTGGGGCTTT
GCTGGCAATGTCGAGTGTTTTTGGAAAGATGATGTGCGGGTTAGGTCTGT
TTCCCAACAAAGTTGACGGAATCGCGACAGCCATCGCCATGTTAGGGAGG
GGGGAGTTTGGATTTCTCATAGCTTCTCAAGCACAAGCTTCGGGGCTTCT
TTCTCAAAGAATGTATGCCGCGACCACCTGGGGTATTCTTGTTCCAACAA
TTTTAGCTCCAATTGTTTTTAAGCCTGTGTTTCGATGGAGAAGCAGTCGA
CAGGAAAACTCTGTGCCAGCTAGCCCGGATGTGTCTTCTGGTCACACGAA
CGATATTCGTTCTTCAGAGCAACCCGATTCGTGA
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protein sequence of Gvermi8139.t1

>Gvermi8139.t1 ID=Gvermi8139.t1|Name=Gvermi8139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=428bp
MESEKDLVHLGLFFASTYVGGEIACFLGASPIVMYIAIGALMGPPLANFV
PIYSGLQLAGLLGILLSVVDAGLGTDLEDLKKSIARALLVAFLGVAFPIA
GAVLIICVTHETEGEFHVSRSLKTAFAVGSAIAPTSLGVTARLLQEIGEL
ETKLGQLISVAAVFDDVISLILLSQVVAVAAPAPSVWNLLQPVVYSLIFI
VGATTLANILPLLLPTLWIKAGLPERYYRQAGLWLLLLLVIAITYLAYKA
RTSFLLGGYLVGIAFAQIPPSIARDPWKRSAAIYIEWLSILFFAATIGFV
IPLKELFSKSAIGLGALLAMSSVFGKMMCGLGLFPNKVDGIATAIAMLGR
GEFGFLIASQAQASGLLSQRMYAATTWGILVPTILAPIVFKPVFRWRSSR
QENSVPASPDVSSGHTNDIRSSEQPDS*
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mRNA from alignment at ScGOVlb_24226:1210571..1211854-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8139.t1 ID=Gvermi8139.t1|Name=Gvermi8139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24226:1210571..1211854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCTGAGAAAGATCTCGTACACCTAGGATTATTTTTTGCCAGTAC
ATATGTCGGTGGAGAAATAGCATGTTTTCTTGGTGCGTCACCGATCGTAA
TGTACATTGCCATTGGTGCGCTCATGGGTCCACCACTCGCAAACTTCGTT
CCAATTTATTCGGGCCTCCAGCTCGCAGGCTTGCTGGGCATTCTTTTAAG
CGTCGTGGATGCTGGTCTTGGTACAGATCTCGAAGACTTGAAGAAAAGTA
TTGCACGAGCTTTATTAGTGGCTTTTCTAGGTGTTGCGTTCCCAATCGCC
GGGGCTGTATTGATTATATGCGTCACTCACGAGACAGAAGGCGAATTTCA
CGTCTCACGTTCTTTGAAAACTGCTTTTGCCGTAGGCTCTGCGATTGCTC
CAACTTCCCTTGGAGTGACAGCTAGACTTTTACAAGAAATTGGAGAGCTG
GAAACAAAACTAGGTCAACTTATCTCTGTGGCGGCAGTGTTCGACGATGT
GATAAGTCTCATACTTTTGTCACAGGTAGTGGCTGTTGCCGCTCCGGCAC
CAAGTGTTTGGAATCTCTTGCAACCTGTAGTCTACTCGCTGATCTTCATA
GTAGGGGCAACGACCCTGGCCAATATTCTACCGTTGCTTCTACCCACGTT
GTGGATAAAAGCCGGGCTTCCTGAACGATACTACCGACAAGCTGGCTTGT
GGCTTCTTTTGCTCTTAGTGATAGCAATAACTTATTTGGCTTACAAAGCG
AGAACGAGCTTCTTACTCGGAGGTTACCTGGTCGGCATCGCTTTTGCACA
AATTCCACCATCTATCGCGAGAGACCCATGGAAACGTTCGGCAGCCATCT
ATATTGAGTGGTTATCTATTCTCTTTTTTGCAGCTACCATTGGGTTCGTC
ATTCCTTTGAAGGAGCTATTTTCCAAAAGCGCCATTGGGCTTGGGGCTTT
GCTGGCAATGTCGAGTGTTTTTGGAAAGATGATGTGCGGGTTAGGTCTGT
TTCCCAACAAAGTTGACGGAATCGCGACAGCCATCGCCATGTTAGGGAGG
GGGGAGTTTGGATTTCTCATAGCTTCTCAAGCACAAGCTTCGGGGCTTCT
TTCTCAAAGAATGTATGCCGCGACCACCTGGGGTATTCTTGTTCCAACAA
TTTTAGCTCCAATTGTTTTTAAGCCTGTGTTTCGATGGAGAAGCAGTCGA
CAGGAAAACTCTGTGCCAGCTAGCCCGGATGTGTCTTCTGGTCACACGAA
CGATATTCGTTCTTCAGAGCAACCCGATTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1210571..1211854-

>Gvermi8139.t1 ID=Gvermi8139.t1|Name=Gvermi8139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1284bp|location=Sequence derived from alignment at ScGOVlb_24226:1210571..1211854- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAATCTGAGAAAGATCTCGTACACCTAGGATTATTTTTTGCCAGTAC
ATATGTCGGTGGAGAAATAGCATGTTTTCTTGGTGCGTCACCGATCGTAA
TGTACATTGCCATTGGTGCGCTCATGGGTCCACCACTCGCAAACTTCGTT
CCAATTTATTCGGGCCTCCAGCTCGCAGGCTTGCTGGGCATTCTTTTAAG
CGTCGTGGATGCTGGTCTTGGTACAGATCTCGAAGACTTGAAGAAAAGTA
TTGCACGAGCTTTATTAGTGGCTTTTCTAGGTGTTGCGTTCCCAATCGCC
GGGGCTGTATTGATTATATGCGTCACTCACGAGACAGAAGGCGAATTTCA
CGTCTCACGTTCTTTGAAAACTGCTTTTGCCGTAGGCTCTGCGATTGCTC
CAACTTCCCTTGGAGTGACAGCTAGACTTTTACAAGAAATTGGAGAGCTG
GAAACAAAACTAGGTCAACTTATCTCTGTGGCGGCAGTGTTCGACGATGT
GATAAGTCTCATACTTTTGTCACAGGTAGTGGCTGTTGCCGCTCCGGCAC
CAAGTGTTTGGAATCTCTTGCAACCTGTAGTCTACTCGCTGATCTTCATA
GTAGGGGCAACGACCCTGGCCAATATTCTACCGTTGCTTCTACCCACGTT
GTGGATAAAAGCCGGGCTTCCTGAACGATACTACCGACAAGCTGGCTTGT
GGCTTCTTTTGCTCTTAGTGATAGCAATAACTTATTTGGCTTACAAAGCG
AGAACGAGCTTCTTACTCGGAGGTTACCTGGTCGGCATCGCTTTTGCACA
AATTCCACCATCTATCGCGAGAGACCCATGGAAACGTTCGGCAGCCATCT
ATATTGAGTGGTTATCTATTCTCTTTTTTGCAGCTACCATTGGGTTCGTC
ATTCCTTTGAAGGAGCTATTTTCCAAAAGCGCCATTGGGCTTGGGGCTTT
GCTGGCAATGTCGAGTGTTTTTGGAAAGATGATGTGCGGGTTAGGTCTGT
TTCCCAACAAAGTTGACGGAATCGCGACAGCCATCGCCATGTTAGGGAGG
GGGGAGTTTGGATTTCTCATAGCTTCTCAAGCACAAGCTTCGGGGCTTCT
TTCTCAAAGAATGTATGCCGCGACCACCTGGGGTATTCTTGTTCCAACAA
TTTTAGCTCCAATTGTTTTTAAGCCTGTGTTTCGATGGAGAAGCAGTCGA
CAGGAAAACTCTGTGCCAGCTAGCCCGGATGTGTCTTCTGGTCACACGAA
CGATATTCGTTCTTCAGAGCAACCCGATTCGTGA
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