Gvermi8011.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8011.t1
Unique NameGvermi8011.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length122
Homology
BLAST of Gvermi8011.t1 vs. uniprot
Match: A0A2V3IHI6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHI6_9FLOR)

HSP 1 Score: 204 bits (519), Expect = 4.530e-66
Identity = 92/121 (76.03%), Postives = 108/121 (89.26%), Query Frame = 0
Query:    1 MALRLSSRAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWGDDDLIGTSYDRHAKAHAEQEH 121
            MA R + R  +RRLSTLA +IDK+ATKGPKLPAGNDPSA+HG  HA+ADTNRWR++S+VFA+PVLGY I+QSMNEHQH +APPEYPYLKI ++VPRFPWGDDDLIGTSY+RHAKAH  +EH
Sbjct:    1 MAFRAAPRIVSRRLSTLAGTIDKSATKGPKLPAGNDPSAAHGPAHAIADTNRWRIVSVVFAVPVLGYAILQSMNEHQHVDAPPEYPYLKIASRVPRFPWGDDDLIGTSYERHAKAHGGEEH 121          
BLAST of Gvermi8011.t1 vs. uniprot
Match: R7Q9Q6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9Q6_CHOCR)

HSP 1 Score: 171 bits (433), Expect = 5.810e-53
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    8 RAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWGDDDLIGTSYDRHAKAHAEQE 120
            R  +RR++T AE+IDK A KGPKLPAGNDPSASHGA HA+ADTNRWR+IS VFALPV  Y II  MN H+H EAPPEYPYLK+  + PRFPWG++DLIGT +D+HA+  A +E
Sbjct:    9 RTASRRMNTAAEAIDKTAAKGPKLPAGNDPSASHGAEHAIADTNRWRIISAVFALPVSAYFIINMMNTHEHTEAPPEYPYLKMATRSPRFPWGEEDLIGTIHDKHARELANKE 121          
BLAST of Gvermi8011.t1 vs. uniprot
Match: A0A1X6NTS9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTS9_PORUM)

HSP 1 Score: 108 bits (270), Expect = 4.030e-28
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0
Query:    8 RAFARRLSTLAESIDKNATKG---PKLPAGNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWGDDDLIGTSYDR-HAKAH 116
            RA  RR S+ A      A       ++P G DP+A H   HAV+D  RWRL++ V ++PV GY  +Q M +H H E  P YPYL I ++VPRFPWGDDDLIGT +DR H + H
Sbjct:   13 RATVRRASSAAAPASTEAAAARPAARMPEGVDPAAFHPKAHAVSDMWRWRLVTGVASVPVFGYFCLQMMADHAHPEPGPAYPYLHITSRVPRFPWGDDDLIGTPHDRLHKRDH 125          
BLAST of Gvermi8011.t1 vs. uniprot
Match: A0A7S0ZKD3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKD3_9RHOD)

HSP 1 Score: 88.2 bits (217), Expect = 5.970e-20
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 0
Query:   28 GPKLPA-GNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQ-SMNEHQHGEAPPEYPYLKIGNKVPRFPWGDDDLIGTSYDRHA 113
            GP+LPA G DP A H   H  A+T +WR IS +    V  YGI   +  EH   EAPP Y Y+   N+VP FPWG+ DLIGT Y R A
Sbjct:   45 GPRLPAVGPDPGAFHSPEHMAAETKKWRRISYICTPFVFLYGIYAIASGEHPSEEAPPAYDYIGFRNRVPSFPWGEGDLIGTPYQRAA 132          
BLAST of Gvermi8011.t1 vs. uniprot
Match: M2W6S8_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W6S8_GALSU)

HSP 1 Score: 75.5 bits (184), Expect = 2.650e-15
Identity = 43/113 (38.05%), Postives = 56/113 (49.56%), Query Frame = 0
Query:    1 MALRLSSRAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQSMNEHQHGEA--PPEYPYLKIGNKVPRFPWGDDDLIGTSYDR 111
            M +R S R F+   ST+            KLP G D +AS    H   +  +W+  S+ F L V G        E +H E   PPEYP++    K PRFPWG++ LIGT YDR
Sbjct:    1 MTIRNSYRLFSTASSTVR-----------KLPPGFDKAASFPKEHHSQEAKKWKRFSLAFGLVVAGVAAYLFPKELEHHEVYIPPEYPFIDRKVKEPRFPWGNEPLIGTPYDR 102          
BLAST of Gvermi8011.t1 vs. uniprot
Match: A0A5J4YV97_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YV97_PORPP)

HSP 1 Score: 75.9 bits (185), Expect = 4.360e-15
Identity = 36/84 (42.86%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   28 GPKLPAGNDPSASHGAHHAVADTNRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWGDDDLIGTSYDR 111
            G K+P GNDP   H      +    WR  S+V    V  +GI      H H E  P Y Y+K+  KVPR+PWGD +LIGT  DR
Sbjct:   44 GMKIPEGNDPGIYHDETFMDSQVTLWRRASLVCLPFVFLFGIYTLSGGHPHHEPTPNYDYMKVRLKVPRYPWGDRELIGTPSDR 127          
The following BLAST results are available for this feature:
BLAST of Gvermi8011.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IHI6_9FLOR4.530e-6676.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q9Q6_CHOCR5.810e-5368.14Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTS9_PORUM4.030e-2848.67Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0ZKD3_9RHOD5.970e-2050.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
M2W6S8_GALSU2.650e-1538.05Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A5J4YV97_PORPP4.360e-1542.86Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10Cytochrome c oxidase, subunit VIacoord: 38..110
e-value: 3.7E-12
score: 48.0
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 41..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:662898..663369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1Gvermi8011.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24226 662898..663369 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=122bp
MALRLSSRAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADT
NRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWG
DDDLIGTSYDRHAKAHAEQEH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf