Gvermi8011.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8011.t1
Unique NameGvermi8011.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:662898..663369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007155785.1
PFAMsCOX6A
Max annot lvl35493|Streptophyta
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030234,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050790,GO:0055086,GO:0055114,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0098772,GO:1901135,GO:1901360,GO:1901564
Evalue3.76e-10
EggNOG OGsKOG3469@1|root,KOG3469@2759|Eukaryota,37VXP@33090|Viridiplantae,3GKE5@35493|Streptophyta,4JQI1@91835|fabids
DescriptionCytochrome c oxidase subunit 6a
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8011Gvermi8011Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 662898..663369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1Gvermi8011.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 662898..663369 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1.start1Gvermi8011.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 662898..662900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1.CDS1Gvermi8011.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 662898..663039 +
Gvermi8011.t1.CDS2Gvermi8011.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 663146..663369 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1.exon1Gvermi8011.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 662898..663039 +
Gvermi8011.t1.exon2Gvermi8011.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 663146..663369 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1.intron1Gvermi8011.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 663040..663145 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8011.t1.stop1Gvermi8011.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 663367..663369 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=122bp
MALRLSSRAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADT
NRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWG
DDDLIGTSYDRHAKAHAEQEH*
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spliced messenger RNA

>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp|location=Sequence derived from alignment at ScGOVlb_24226:662898..663369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCCGACTCTCGTCGCGCGCCTTCGCGCGCCGCCTCTCCACGCT
CGCCGAGTCCATCGACAAGAACGCCACCAAGGGCCCCAAGCTCCCCGCCG
GCAACGATCCTTCCGCCAGCCACGGAGCGCATCACGCTGTCGCCGACACC
AACAGGTGGCGCCTCATCTCGATGGTGTTCGCGCTGCCCGTCCTCGGCTA
CGGCATCATCCAGTCCATGAACGAGCACCAGCACGGCGAAGCGCCGCCGG
AGTACCCGTACCTCAAGATTGGAAACAAGGTGCCGCGCTTCCCGTGGGGC
GACGACGACCTCATCGGCACAAGCTACGACCGCCACGCCAAGGCGCACGC
CGAACAAGAGCACTAG
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protein sequence of Gvermi8011.t1

>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=122bp
MALRLSSRAFARRLSTLAESIDKNATKGPKLPAGNDPSASHGAHHAVADT
NRWRLISMVFALPVLGYGIIQSMNEHQHGEAPPEYPYLKIGNKVPRFPWG
DDDLIGTSYDRHAKAHAEQEH*
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mRNA from alignment at ScGOVlb_24226:662898..663369+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=472bp|location=Sequence derived from alignment at ScGOVlb_24226:662898..663369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCCGACTCTCGTCGCGCGCCTTCGCGCGCCGCCTCTCCACGCT
CGCCGAGTCCATCGACAAGAACGCCACCAAGGGCCCCAAGCTCCCCGCCG
GCAACGATCCTTCCGCCAGCCACGGAGCGCATCACGCTGTCGGTACGTCC
GTTCGTCTCTGCGAGCGCGCCGGACCCCCACCCCCTCTTCCACGTCCGCC
TCTCACGCGTCTGACCGCCCGCCCTTCCATCTCCCCTCCGCCTCGCAGCC
GACACCAACAGGTGGCGCCTCATCTCGATGGTGTTCGCGCTGCCCGTCCT
CGGCTACGGCATCATCCAGTCCATGAACGAGCACCAGCACGGCGAAGCGC
CGCCGGAGTACCCGTACCTCAAGATTGGAAACAAGGTGCCGCGCTTCCCG
TGGGGCGACGACGACCTCATCGGCACAAGCTACGACCGCCACGCCAAGGC
GCACGCCGAACAAGAGCACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24226:662898..663369+

>Gvermi8011.t1 ID=Gvermi8011.t1|Name=Gvermi8011.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=366bp|location=Sequence derived from alignment at ScGOVlb_24226:662898..663369+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCCGACTCTCGTCGCGCGCCTTCGCGCGCCGCCTCTCCACGCT
CGCCGAGTCCATCGACAAGAACGCCACCAAGGGCCCCAAGCTCCCCGCCG
GCAACGATCCTTCCGCCAGCCACGGAGCGCATCACGCTGTCGCCGACACC
AACAGGTGGCGCCTCATCTCGATGGTGTTCGCGCTGCCCGTCCTCGGCTA
CGGCATCATCCAGTCCATGAACGAGCACCAGCACGGCGAAGCGCCGCCGG
AGTACCCGTACCTCAAGATTGGAAACAAGGTGCCGCGCTTCCCGTGGGGC
GACGACGACCTCATCGGCACAAGCTACGACCGCCACGCCAAGGCGCACGC
CGAACAAGAGCACTAG
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