Gvermi7105.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7105.t1
Unique NameGvermi7105.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_232contigScGOVlb_232:163..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7105Gvermi7105Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_232 163..3519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7105.t1Gvermi7105.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_232 163..3519 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7105.t1.start1Gvermi7105.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_232 163..165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7105.t1.CDS1Gvermi7105.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_232 163..1099 +
Gvermi7105.t1.CDS2Gvermi7105.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_232 2918..3519 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7105.t1.exon1Gvermi7105.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_232 163..1099 +
Gvermi7105.t1.exon2Gvermi7105.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_232 2918..3519 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7105.t1.intron1Gvermi7105.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_232 1100..2917 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7105.t1 ID=Gvermi7105.t1|Name=Gvermi7105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp
MEGNFEDEDLDDEDYEDSGSEVEESTDGGSDDQDGSGNSSDSSESSSGNS
SRTVTFAVPMVTKKRHSMSTRAYKKASNAFKTLNNRADKNPFEAINEDVH
DCRLWQKWKQALQNTCLLGEVDYNKLISQKGKSPALGNRADLLLYGFMQR
LDSKNNFLDEGFSRYGSVNGRTLFKMYEEEYGAFDRHTITNLQEKLFNMR
FIGSTIDEAKRFLKDFRDLFNLSNGVHRTQETESNGIHLLLKALGSNDAW
SSPTNSIIKRIEKIKVAKAIDIFRKHLDYGTASTIRHLSEGPSFVSSDLA
GRDAVANLKSQRQGQMEKLTIDEIDPLQPGEVVPEYVSYAGASDKALNVM
DTREQTPSSGIFSPLPMVGTKEQTKAFQEERALLSEGRDGQHQGKLLNQE
RVQHPELKAALVRKEVNSELSKIAQLDGGALLSSIVSKLAKNKPEKAIRR
IRALRAAQVSNKTGAQEEDKQVDNLDELNMQALRGEHVHPSGPAPKDGSY
PTPLTMKDFYALP
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spliced messenger RNA

>Gvermi7105.t1 ID=Gvermi7105.t1|Name=Gvermi7105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_232:163..3519+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGAAATTTCGAGGATGAAGACCTCGATGACGAAGATTATGAGGA
CTCTGGCTCTGAGGTTGAAGAGTCAACTGACGGTGGATCTGATGACCAGG
ATGGCTCTGGCAACTCAAGTGACTCAAGCGAGTCAAGCTCTGGCAACAGC
AGTAGGACGGTGACGTTTGCTGTTCCCATGGTAACCAAGAAGAGGCATAG
CATGAGTACTCGTGCTTACAAGAAGGCTTCCAATGCCTTTAAGACTCTCA
ACAACCGTGCGGACAAGAACCCTTTTGAGGCTATCAATGAAGATGTTCAT
GATTGCCGCTTATGGCAGAAGTGGAAGCAAGCACTCCAAAACACGTGCCT
GCTTGGCGAAGTGGACTACAACAAGTTGATATCGCAGAAGGGCAAGTCAC
CTGCCCTTGGCAATCGTGCGGACCTTCTACTTTACGGTTTCATGCAACGT
CTGGACTCCAAGAACAACTTTCTTGACGAAGGCTTTTCACGATATGGCAG
CGTGAATGGACGAACCCTATTCAAGATGTATGAGGAGGAGTATGGTGCGT
TTGATCGTCACACGATCACAAACCTGCAAGAGAAGCTATTCAACATGCGA
TTCATCGGAAGTACAATCGATGAAGCCAAACGCTTTCTAAAGGACTTTCG
GGACTTGTTCAACTTGAGCAATGGAGTTCATCGGACTCAAGAGACGGAGA
GCAATGGTATCCACCTGCTATTGAAGGCTTTGGGCAGTAACGACGCGTGG
TCATCGCCGACCAACTCCATTATCAAAAGAATTGAAAAGATTAAAGTGGC
CAAAGCCATCGACATCTTTCGCAAACACTTGGATTATGGAACGGCATCTA
CCATTCGTCACTTATCCGAAGGGCCCAGCTTTGTTTCAAGTGATTTGGCT
GGAAGGGACGCTgttgccaacctgaagagtcaacgtcAAGGCCAAATGGA
GAAGCTTACGATTGATGAAATCGATCCACTTCAACCAGGAGAAGTTGTAC
CCGAGTACGTATCTTATGCTGGTGCTTCCGACAAAGCACTCAATGTAATG
GACACGAGGGAGCAAACACCTTCAAGTGGTATTTTTTCTCCTCTTCCAAT
GGTTGGAACCAAGGAGCAGACGAAGGCGTTTCAAGAAGAACGTGCATTAT
TGAGCGAGGGGCGAGATGGACAGCACCAAGGCAAATTGTTGAACCAGGAA
CGGGTTCAACACCCAGAGCTGAAGGCAGCTTTGGTAAGGAAAGAAGTCAA
CTCAGAGTTAAGCAAGATTGCGCAGCTCGATGGTGGGGCTTTACTATCGT
CAATTGTATCGAAGTTGGCGAAGAACAAACCGGAAAAGGCAATTCGGAGA
ATAAGGGCGTTACGGGCAGCACAAGTTTCCAACAAGACAGGGGCGCAAGA
AGAGGACAAGCAGGTTGACAACTTGGACGAGTTAAACATGCAAGCTCTCA
GGGGCGAACATGTTCACCCGTCTGGACCTGCACCAAAGGATGGATCTTAT
CCAACTCCTTTGACGATGAAGGACTTTTATGCTTTACCC
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protein sequence of Gvermi7105.t1

>Gvermi7105.t1 ID=Gvermi7105.t1|Name=Gvermi7105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=513bp
MEGNFEDEDLDDEDYEDSGSEVEESTDGGSDDQDGSGNSSDSSESSSGNS
SRTVTFAVPMVTKKRHSMSTRAYKKASNAFKTLNNRADKNPFEAINEDVH
DCRLWQKWKQALQNTCLLGEVDYNKLISQKGKSPALGNRADLLLYGFMQR
LDSKNNFLDEGFSRYGSVNGRTLFKMYEEEYGAFDRHTITNLQEKLFNMR
FIGSTIDEAKRFLKDFRDLFNLSNGVHRTQETESNGIHLLLKALGSNDAW
SSPTNSIIKRIEKIKVAKAIDIFRKHLDYGTASTIRHLSEGPSFVSSDLA
GRDAVANLKSQRQGQMEKLTIDEIDPLQPGEVVPEYVSYAGASDKALNVM
DTREQTPSSGIFSPLPMVGTKEQTKAFQEERALLSEGRDGQHQGKLLNQE
RVQHPELKAALVRKEVNSELSKIAQLDGGALLSSIVSKLAKNKPEKAIRR
IRALRAAQVSNKTGAQEEDKQVDNLDELNMQALRGEHVHPSGPAPKDGSY
PTPLTMKDFYALP
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mRNA from alignment at ScGOVlb_232:163..3519+

Legend: polypeptidestart_codonCDSexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7105.t1 ID=Gvermi7105.t1|Name=Gvermi7105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3357bp|location=Sequence derived from alignment at ScGOVlb_232:163..3519+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGGAAATTTCGAGGATGAAGACCTCGATGACGAAGATTATGAGGA
CTCTGGCTCTGAGGTTGAAGAGTCAACTGACGGTGGATCTGATGACCAGG
ATGGCTCTGGCAACTCAAGTGACTCAAGCGAGTCAAGCTCTGGCAACAGC
AGTAGGACGGTGACGTTTGCTGTTCCCATGGTAACCAAGAAGAGGCATAG
CATGAGTACTCGTGCTTACAAGAAGGCTTCCAATGCCTTTAAGACTCTCA
ACAACCGTGCGGACAAGAACCCTTTTGAGGCTATCAATGAAGATGTTCAT
GATTGCCGCTTATGGCAGAAGTGGAAGCAAGCACTCCAAAACACGTGCCT
GCTTGGCGAAGTGGACTACAACAAGTTGATATCGCAGAAGGGCAAGTCAC
CTGCCCTTGGCAATCGTGCGGACCTTCTACTTTACGGTTTCATGCAACGT
CTGGACTCCAAGAACAACTTTCTTGACGAAGGCTTTTCACGATATGGCAG
CGTGAATGGACGAACCCTATTCAAGATGTATGAGGAGGAGTATGGTGCGT
TTGATCGTCACACGATCACAAACCTGCAAGAGAAGCTATTCAACATGCGA
TTCATCGGAAGTACAATCGATGAAGCCAAACGCTTTCTAAAGGACTTTCG
GGACTTGTTCAACTTGAGCAATGGAGTTCATCGGACTCAAGAGACGGAGA
GCAATGGTATCCACCTGCTATTGAAGGCTTTGGGCAGTAACGACGCGTGG
TCATCGCCGACCAACTCCATTATCAAAAGAATTGAAAAGATTAAAGTGGC
CAAAGCCATCGACATCTTTCGCAAACACTTGGATTATGGAACGGCATCTA
CCATTCGTCACTTATCCGAAGGGCCCAGCTTTGTTTCAAGTGATTTGGCT
GGAAGGGACGCTgttgccaacctgaagagtcaacgtcgtgctggagcagc
aaccttcgatgatgactccaatggactgaccctgcgagcaggaaatgcac
gcaacaactggtctaagaaggattcttatcgtcggaatgacactggcaag
ggatcgaacaaccaggacaagtttagaggtccaggaagacaggttcgctg
ttaccgctgtgaacaagtgggccacagggtgatgaattgtccttttgcac
ctccaaagggacaacaggacatcaaaagtgaaggaacgggtaactttgtg
tctgacacagaaaggatggtgtctcttaccgacattttgccaaatggatc
aggtactcagacggaagctgggaatggacaacgtcgggccggaatggcca
agatggcttcctccgatgaagtacttttaagtgatggactcgacgaggac
aagaagatggtaatggtaacggttgactctggttgtgctcaaactagttg
tttaaccagcgccacaacgttggtcaacgtaaaagatgttcctctcggaa
cagctggatacgaagatctaagtgggactactcacgcggttactcaagtt
ggggacttttatggaaaggtcatttgtccccataccaagcaggtactgga
tttctgcttgagtggagtgtatgttgcaccaactcttgcctttggaatgt
tgagtgctgttcactgtcaacaggagggtgcttcaattaactttcccgcc
aattccgagtctattgagatcaatcaaggtggccagtctatagaagtatc
gaagagtcaaacaagtcacgtgtacgaggtgattttagaggcttcagaag
ccagcaagagggctggacttgctcgtacaaacgagacatcgttagcaatt
gtgcacagaaggttggcacattgcaacgtagctttatgcaaaagggccat
ctcagtgtctgacggtatcaagctcaaagcagggacttcggcggactcat
acttggagaccggtgagctatgtgggacgtgttcgatgtccaagatgact
gcttcacgcaagtcaaatgcacctgcaattcccaaaactgatatccttcg
gcatcatttctcaatggactttatccagggactcactccttcggtaaaga
gttatcagtacatgcttttagtggtggagcatgtaagtggggtcatattc
gtgaaagcctgtgaatcgaagaaactatctagggaactactcggtgatat
ggctacttactttgaggtaaaccaagtaccgtttactaagaccatcactt
tggatagagacagttgctttatcagtgatgcgtttgtacaagaggccaag
gatcaaggattcaagctcatatttgcgtcaccaggaccaaaaggtcattt
tacattgggaaaggctgaacgtggtgtacgtacagtttccgatggaggaa
gggcgttcctcgcaggggcgaatctaccggcttacttttgggactatgct
tatgcaaatgcagcttatgtgtacaaccgcactccagcaaaggatcagga
gaaatctaggatctcaattctcaggggcgtagatgtttcactttcgaacc
ttcgagtatgggggtgtctcacctacagtctacgaccggatctaatccag
aaacgcggaagactgagcccccgtggataccctggagttcttttgggaca
tgctgacgactctcgctatgggacttatgaaattctaatgcttgcgaatg
gagccgttcaccaagttcatagccgcgatgtggagttcgacgagacacgt
gctccgaatcttaagggcgagtgtcggatctttgacaagaacggagttaa
tGCAGAAGGCCAAATGGAGAAGCTTACGATTGATGAAATCGATCCACTTC
AACCAGGAGAAGTTGTACCCGAGTACGTATCTTATGCTGGTGCTTCCGAC
AAAGCACTCAATGTAATGGACACGAGGGAGCAAACACCTTCAAGTGGTAT
TTTTTCTCCTCTTCCAATGGTTGGAACCAAGGAGCAGACGAAGGCGTTTC
AAGAAGAACGTGCATTATTGAGCGAGGGGCGAGATGGACAGCACCAAGGC
AAATTGTTGAACCAGGAACGGGTTCAACACCCAGAGCTGAAGGCAGCTTT
GGTAAGGAAAGAAGTCAACTCAGAGTTAAGCAAGATTGCGCAGCTCGATG
GTGGGGCTTTACTATCGTCAATTGTATCGAAGTTGGCGAAGAACAAACCG
GAAAAGGCAATTCGGAGAATAAGGGCGTTACGGGCAGCACAAGTTTCCAA
CAAGACAGGGGCGCAAGAAGAGGACAAGCAGGTTGACAACTTGGACGAGT
TAAACATGCAAGCTCTCAGGGGCGAACATGTTCACCCGTCTGGACCTGCA
CCAAAGGATGGATCTTATCCAACTCCTTTGACGATGAAGGACTTTTATGC
TTTACCC
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Coding sequence (CDS) from alignment at ScGOVlb_232:163..3519+

>Gvermi7105.t1 ID=Gvermi7105.t1|Name=Gvermi7105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1539bp|location=Sequence derived from alignment at ScGOVlb_232:163..3519+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGGAAATTTCGAGGATGAAGACCTCGATGACGAAGATTATGAGGA
CTCTGGCTCTGAGGTTGAAGAGTCAACTGACGGTGGATCTGATGACCAGG
ATGGCTCTGGCAACTCAAGTGACTCAAGCGAGTCAAGCTCTGGCAACAGC
AGTAGGACGGTGACGTTTGCTGTTCCCATGGTAACCAAGAAGAGGCATAG
CATGAGTACTCGTGCTTACAAGAAGGCTTCCAATGCCTTTAAGACTCTCA
ACAACCGTGCGGACAAGAACCCTTTTGAGGCTATCAATGAAGATGTTCAT
GATTGCCGCTTATGGCAGAAGTGGAAGCAAGCACTCCAAAACACGTGCCT
GCTTGGCGAAGTGGACTACAACAAGTTGATATCGCAGAAGGGCAAGTCAC
CTGCCCTTGGCAATCGTGCGGACCTTCTACTTTACGGTTTCATGCAACGT
CTGGACTCCAAGAACAACTTTCTTGACGAAGGCTTTTCACGATATGGCAG
CGTGAATGGACGAACCCTATTCAAGATGTATGAGGAGGAGTATGGTGCGT
TTGATCGTCACACGATCACAAACCTGCAAGAGAAGCTATTCAACATGCGA
TTCATCGGAAGTACAATCGATGAAGCCAAACGCTTTCTAAAGGACTTTCG
GGACTTGTTCAACTTGAGCAATGGAGTTCATCGGACTCAAGAGACGGAGA
GCAATGGTATCCACCTGCTATTGAAGGCTTTGGGCAGTAACGACGCGTGG
TCATCGCCGACCAACTCCATTATCAAAAGAATTGAAAAGATTAAAGTGGC
CAAAGCCATCGACATCTTTCGCAAACACTTGGATTATGGAACGGCATCTA
CCATTCGTCACTTATCCGAAGGGCCCAGCTTTGTTTCAAGTGATTTGGCT
GGAAGGGACGCTgttgccaacctgaagagtcaacgtcAAGGCCAAATGGA
GAAGCTTACGATTGATGAAATCGATCCACTTCAACCAGGAGAAGTTGTAC
CCGAGTACGTATCTTATGCTGGTGCTTCCGACAAAGCACTCAATGTAATG
GACACGAGGGAGCAAACACCTTCAAGTGGTATTTTTTCTCCTCTTCCAAT
GGTTGGAACCAAGGAGCAGACGAAGGCGTTTCAAGAAGAACGTGCATTAT
TGAGCGAGGGGCGAGATGGACAGCACCAAGGCAAATTGTTGAACCAGGAA
CGGGTTCAACACCCAGAGCTGAAGGCAGCTTTGGTAAGGAAAGAAGTCAA
CTCAGAGTTAAGCAAGATTGCGCAGCTCGATGGTGGGGCTTTACTATCGT
CAATTGTATCGAAGTTGGCGAAGAACAAACCGGAAAAGGCAATTCGGAGA
ATAAGGGCGTTACGGGCAGCACAAGTTTCCAACAAGACAGGGGCGCAAGA
AGAGGACAAGCAGGTTGACAACTTGGACGAGTTAAACATGCAAGCTCTCA
GGGGCGAACATGTTCACCCGTCTGGACCTGCACCAAAGGATGGATCTTAT
CCAACTCCTTTGACGATGAAGGACTTTTATGCTTTACCC
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