Gvermi8844.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi8844.t1
Unique NameGvermi8844.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length208
Homology
BLAST of Gvermi8844.t1 vs. uniprot
Match: A0A2V3ITL0_9FLOR (Putative E3 ubiquitin-protein ligase HIP1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITL0_9FLOR)

HSP 1 Score: 235 bits (599), Expect = 1.150e-75
Identity = 113/175 (64.57%), Postives = 135/175 (77.14%), Query Frame = 0
Query:   33 APASTSADLFVVIVVSVFLFLAASILRLVPWVVPMSTRPRLSARRALAAAAQFEPIGGFANLGYGTLESGTGPDARAGSRGAPSYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCRCRFA 207
            AP + SAD F+VI VS+FLFL ASILR++PW  P++TRPR +ARR+LA+AA+   +  F+   YGT++     +AR    G PSYE LLEIE+RIG AK GLT+ QI ILPTY CD+ D ERHERRGMYCAICRD+YA G  V ILPCGDEFH  CI+PWL+QQATCPLCRCRFA
Sbjct:   25 APPAHSADFFMVIFVSIFLFLTASILRILPWAAPLATRPRWAARRSLASAARVNSLRRFSAFTYGTIDPMMPAEARFAGAGGPSYETLLEIEDRIGNAKHGLTDDQIAILPTYRCDEHDCERHERRGMYCAICRDMYAQGHTVSILPCGDEFHVDCIAPWLRQQATCPLCRCRFA 199          
BLAST of Gvermi8844.t1 vs. uniprot
Match: K3Y9N1_SETIT (RING-type domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K3Y9N1_SETIT)

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-13
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 0
Query:  116 SYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDR---DRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLC 202
            +YE L ++ E IG   +GL ES I +LPT  C  R    +E+HE     C IC   Y + DR+  LPCG ++H AC++ WL+    CP+C
Sbjct:  157 TYEELQQLGEAIGTQSKGLPESVIALLPTSTCKIRIFSRKEKHEE----CVICCMAYKNRDRLTKLPCGHQYHQACVAKWLQINKVCPVC 242          
BLAST of Gvermi8844.t1 vs. uniprot
Match: UPI001EE52401 (probable E3 ubiquitin-protein ligase RHG1A isoform X1 n=3 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE52401)

HSP 1 Score: 77.0 bits (188), Expect = 6.250e-13
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0
Query:  117 YEMLLEIEERIGYAKQ-GLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCR 203
            YE LLE+ E +G  KQ G+T+S++  LP       D   ++     C IC   Y  GD + ILPC  EFH  CI  WLK  ATCP+CR
Sbjct:  405 YEELLELAESLGEVKQKGMTKSELNRLPIRKFKSSDSSGNDTTD--CLICMCDYQEGDSLRILPCCHEFHQPCIDKWLKNTATCPICR 490          
BLAST of Gvermi8844.t1 vs. uniprot
Match: A0A1X7V4M0_AMPQE (RING-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V4M0_AMPQE)

HSP 1 Score: 76.6 bits (187), Expect = 6.300e-13
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 0
Query:  116 SYEMLLEIEERIGYAKQ-GLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCR 203
            SYE  L++ ER+G  +  GL +  I  LP         E  +     C IC   Y   D + ILPC  E+H+ACISPWLKQQ TCP+CR
Sbjct:  286 SYEDWLDLAERLGPGRPLGLPDDAIDALPVR--THLSSESSDPAKTNCVICMMDYEDQDTIKILPCSHEYHSACISPWLKQQRTCPICR 372          
BLAST of Gvermi8844.t1 vs. uniprot
Match: UPI001EB076B2 (uncharacterized protein LOC124141063 isoform X1 n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB076B2)

HSP 1 Score: 77.0 bits (188), Expect = 7.360e-13
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0
Query:  117 YEMLLEIEERIGYAKQ-GLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCR 203
            YE LLE+ E +G  KQ G+T+S++  LP       D   ++     C IC   Y  GD + ILPC  EFH  CI  WLK  ATCP+CR
Sbjct:  796 YEELLELAESLGEVKQKGMTKSELNRLPIRKFKSSDSSGNDTSD--CLICMCDYQEGDSLRILPCCHEFHQPCIDKWLKNTATCPICR 881          
BLAST of Gvermi8844.t1 vs. uniprot
Match: C5YE43_SORBI (RING-type domain-containing protein n=2 Tax=Andropogoneae TaxID=147429 RepID=C5YE43_SORBI)

HSP 1 Score: 72.4 bits (176), Expect = 6.800e-12
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0
Query:  116 SYEMLLEIEERIGYAKQGLTESQIGILPT----YGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLC 202
            +YE L ++ E IG   +GL ES I +LPT     G   R +E+HE     C IC   Y + DR+  LPCG ++H AC++ WL+    CP+C
Sbjct:  156 TYEELQQLGEAIGTESKGLPESVIALLPTSTYKIGIFSR-KEKHEE----CVICCMSYKNRDRLTKLPCGHQYHQACVAKWLQINKVCPVC 241          
BLAST of Gvermi8844.t1 vs. uniprot
Match: UPI0019D5EF87 (E3 ubiquitin ligase BIG BROTHER-related-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5EF87)

HSP 1 Score: 73.2 bits (178), Expect = 7.000e-12
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 0
Query:  116 SYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLC 202
            +YE L ++ E IG   +GL ES I +LPT     R   R E+    C IC   Y + DR+  LPCG ++H AC++ WL+    CP+C
Sbjct:  218 TYEELQQLGEAIGTESKGLPESVIALLPTSTYKIRIFSRKEKHDE-CVICCMAYKNRDRLTQLPCGHQYHQACVAKWLQINKVCPVC 303          
BLAST of Gvermi8844.t1 vs. uniprot
Match: A0A7J6BNA6_9TELE (RING-type domain-containing protein n=5 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6BNA6_9TELE)

HSP 1 Score: 73.9 bits (180), Expect = 7.190e-12
Identity = 39/90 (43.33%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  116 SYEMLLEIEERIG--YAKQGLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCR 203
            +YE LL  EE+ G   AK  LT+++I  LPT   D      H      C IC   Y  G+R+ ILPC  ++H  CI  WLK+ ATCP+CR
Sbjct:  400 NYEALLAFEEQQGAVVAKNTLTKAEIERLPTKTYDPT----HSAGKTDCQICFSEYKAGERLRILPCLHDYHVKCIDRWLKENATCPICR 485          
BLAST of Gvermi8844.t1 vs. uniprot
Match: A0A2T7CZ44_9POAL (RING-type domain-containing protein n=5 Tax=Panicum TaxID=4539 RepID=A0A2T7CZ44_9POAL)

HSP 1 Score: 72.8 bits (177), Expect = 9.620e-12
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 0
Query:  116 SYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLC 202
            +YE L ++ E IG   +GL +S I +LPT     R   R E+    C IC   Y + DR+  LPCG ++H AC+S WL+    CP+C
Sbjct:  218 TYEELQQLGEAIGTQSKGLPKSVIALLPTSTYKIRIFSRKEKNDE-CVICCMAYKNRDRLTQLPCGHQYHQACVSKWLQINKVCPVC 303          
BLAST of Gvermi8844.t1 vs. uniprot
Match: A0A5N5NVD4_PANHP (RING-type domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5NVD4_PANHP)

HSP 1 Score: 72.8 bits (177), Expect = 1.720e-11
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 0
Query:  116 SYEMLLEIEERIG--YAKQGLTESQIGILPTYGCDDRDRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCPLCR 203
            +YE LLE EE  G   AK  L++ +I  LPT   D      H      C IC   Y  G+++ ILPC  ++H  CI  WLK+ ATCP+CR
Sbjct:  368 NYEALLEFEEIQGAVMAKNTLSKGEIERLPTKAYDPS----HNAGKTDCQICFSDYKKGEKLRILPCFHDYHVKCIDRWLKENATCPICR 453          
The following BLAST results are available for this feature:
BLAST of Gvermi8844.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ITL0_9FLOR1.150e-7564.57Putative E3 ubiquitin-protein ligase HIP1 n=1 Tax=... [more]
K3Y9N1_SETIT1.000e-1341.11RING-type domain-containing protein n=2 Tax=Setari... [more]
UPI001EE524016.250e-1344.32probable E3 ubiquitin-protein ligase RHG1A isoform... [more]
A0A1X7V4M0_AMPQE6.300e-1343.82RING-type domain-containing protein n=1 Tax=Amphim... [more]
UPI001EB076B27.360e-1344.32uncharacterized protein LOC124141063 isoform X1 n=... [more]
C5YE43_SORBI6.800e-1240.66RING-type domain-containing protein n=2 Tax=Androp... [more]
UPI0019D5EF877.000e-1240.23E3 ubiquitin ligase BIG BROTHER-related-like n=1 T... [more]
A0A7J6BNA6_9TELE7.190e-1243.33RING-type domain-containing protein n=5 Tax=Cyprin... [more]
A0A2T7CZ44_9POAL9.620e-1240.23RING-type domain-containing protein n=5 Tax=Panicu... [more]
A0A5N5NVD4_PANHP1.720e-1142.22RING-type domain-containing protein n=2 Tax=Pangas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 162..202
e-value: 3.1E-4
score: 30.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 161..203
e-value: 5.1E-11
score: 42.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 162..203
score: 11.928664
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 123..207
e-value: 2.6E-18
score: 67.4
NoneNo IPR availablePANTHERPTHR46171:SF3GH10160Pcoord: 106..203
NoneNo IPR availablePANTHERPTHR46171GH10160Pcoord: 106..203
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 66..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..65
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 162..203
e-value: 4.19218E-18
score: 72.3345
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 155..206
NoneNo IPR availableTMHMMTMhelixcoord: 41..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:252049..252672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1Gvermi8844.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_2241 252049..252672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=208bp
MAPAALPHAVGALRAARGEASQLGAVYNAASPAPASTSADLFVVIVVSVF
LFLAASILRLVPWVVPMSTRPRLSARRALAAAAQFEPIGGFANLGYGTLE
SGTGPDARAGSRGAPSYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDR
DRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCP
LCRCRFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD