Gvermi8844.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8844.t1
Unique NameGvermi8844.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:252049..252672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA06G33317.1
PFAMszf-RING_2
Max annot lvl35493|Streptophyta
KEGG koko:K10635,ko:K19041
Evalue1.17e-14
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota,37PXP@33090|Viridiplantae,3GDP4@35493|Streptophyta,4JF5W@91835|fabids
EC2.3.2.27
DescriptionEncoded by
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8844Gvermi8844Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 252049..252672 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1.start1Gvermi8844.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 252049..252051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1.CDS1Gvermi8844.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 252049..252672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1.exon1Gvermi8844.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 252049..252672 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1.stop1Gvermi8844.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 252670..252672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8844.t1Gvermi8844.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 252049..252672 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=208bp
MAPAALPHAVGALRAARGEASQLGAVYNAASPAPASTSADLFVVIVVSVF
LFLAASILRLVPWVVPMSTRPRLSARRALAAAAQFEPIGGFANLGYGTLE
SGTGPDARAGSRGAPSYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDR
DRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCP
LCRCRFA*
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spliced messenger RNA

>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=624bp|location=Sequence derived from alignment at ScGOVlb_2241:252049..252672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGGCCGCGCTGCCGCACGCCGTGGGCGCGCTCCGCGCCGCGCG
CGGCGAGGCCTCGCAGCTGGGCGCGGTGTACAATGcggcgtcgcccgcgc
cggcgtccacgtccgccgacctgttcgtcgtcatcgtcgtgtcCGTGTTT
CTGTTCCTGGCCGCGTCCATTCTGCGCCTCGTGCCGTGGGTGGTGCCCAT
GAGCACCAggccgcggctgtcggcgcggcgtgcgctggcggcggccgcgC
AGTTCGAGCCGATTGGCGGCTTTGCCAACCTGGGTTACGGCACGCTCGAG
TCCGGCACCGGCCCCGACGCGCGCGCGGGCAGCAGGGGCGCGCCCAGCTA
CGAGATGCTGCTGGAGATTGAGGAGCGCATCGGCTACGCCAAGCAGGGGC
TGACGGAGAGCCAAATTGGCATCCTGCCCACGTACGGCTGCGACGACCGC
GACCGTGAGCGCCATGAGCGGCGCGGAATGTACTGCGCCATCTGCCGCGA
CGTGTACGCGCACGGGGACCGCGTGTGCATCCTGCCGTGCGGCGACGAGT
TTCACGCCGCGTGCATCTCGCCGTGGCTCAAGCAGCAGGCGACGTGCCCT
CTGTGCCGCTGCAGGTTTGCATAG
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protein sequence of Gvermi8844.t1

>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=208bp
MAPAALPHAVGALRAARGEASQLGAVYNAASPAPASTSADLFVVIVVSVF
LFLAASILRLVPWVVPMSTRPRLSARRALAAAAQFEPIGGFANLGYGTLE
SGTGPDARAGSRGAPSYEMLLEIEERIGYAKQGLTESQIGILPTYGCDDR
DRERHERRGMYCAICRDVYAHGDRVCILPCGDEFHAACISPWLKQQATCP
LCRCRFA*
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mRNA from alignment at ScGOVlb_2241:252049..252672+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=624bp|location=Sequence derived from alignment at ScGOVlb_2241:252049..252672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGGCCGCGCTGCCGCACGCCGTGGGCGCGCTCCGCGCCGCGCG
CGGCGAGGCCTCGCAGCTGGGCGCGGTGTACAATGcggcgtcgcccgcgc
cggcgtccacgtccgccgacctgttcgtcgtcatcgtcgtgtcCGTGTTT
CTGTTCCTGGCCGCGTCCATTCTGCGCCTCGTGCCGTGGGTGGTGCCCAT
GAGCACCAggccgcggctgtcggcgcggcgtgcgctggcggcggccgcgC
AGTTCGAGCCGATTGGCGGCTTTGCCAACCTGGGTTACGGCACGCTCGAG
TCCGGCACCGGCCCCGACGCGCGCGCGGGCAGCAGGGGCGCGCCCAGCTA
CGAGATGCTGCTGGAGATTGAGGAGCGCATCGGCTACGCCAAGCAGGGGC
TGACGGAGAGCCAAATTGGCATCCTGCCCACGTACGGCTGCGACGACCGC
GACCGTGAGCGCCATGAGCGGCGCGGAATGTACTGCGCCATCTGCCGCGA
CGTGTACGCGCACGGGGACCGCGTGTGCATCCTGCCGTGCGGCGACGAGT
TTCACGCCGCGTGCATCTCGCCGTGGCTCAAGCAGCAGGCGACGTGCCCT
CTGTGCCGCTGCAGGTTTGCATAG
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Coding sequence (CDS) from alignment at ScGOVlb_2241:252049..252672+

>Gvermi8844.t1 ID=Gvermi8844.t1|Name=Gvermi8844.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=624bp|location=Sequence derived from alignment at ScGOVlb_2241:252049..252672+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGGCCGCGCTGCCGCACGCCGTGGGCGCGCTCCGCGCCGCGCG
CGGCGAGGCCTCGCAGCTGGGCGCGGTGTACAATGcggcgtcgcccgcgc
cggcgtccacgtccgccgacctgttcgtcgtcatcgtcgtgtcCGTGTTT
CTGTTCCTGGCCGCGTCCATTCTGCGCCTCGTGCCGTGGGTGGTGCCCAT
GAGCACCAggccgcggctgtcggcgcggcgtgcgctggcggcggccgcgC
AGTTCGAGCCGATTGGCGGCTTTGCCAACCTGGGTTACGGCACGCTCGAG
TCCGGCACCGGCCCCGACGCGCGCGCGGGCAGCAGGGGCGCGCCCAGCTA
CGAGATGCTGCTGGAGATTGAGGAGCGCATCGGCTACGCCAAGCAGGGGC
TGACGGAGAGCCAAATTGGCATCCTGCCCACGTACGGCTGCGACGACCGC
GACCGTGAGCGCCATGAGCGGCGCGGAATGTACTGCGCCATCTGCCGCGA
CGTGTACGCGCACGGGGACCGCGTGTGCATCCTGCCGTGCGGCGACGAGT
TTCACGCCGCGTGCATCTCGCCGTGGCTCAAGCAGCAGGCGACGTGCCCT
CTGTGCCGCTGCAGGTTTGCATAG
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