Gvermi8856.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8856.t1
Unique NameGvermi8856.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:280050..280433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_58423
Preferred nameHINT2
PFAMsHIT
Max annot lvl2759|Eukaryota
KEGG koko:K02503
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0006629,GO:0008150,GO:0008152,GO:0009056,GO:0009892,GO:0010605,GO:0016042,GO:0019222,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:1901575,GO:1901983,GO:1901984,GO:2000756,GO:2000757
Evalue9.65e-50
EggNOG OGsCOG0537@1|root,KOG3275@2759|Eukaryota
Descriptionnucleoside phosphate binding
COG categoryFG
BiGG ReactioniRC1080.CRv4_Au5_s6_g12858_t1
BRITEko00000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8856Gvermi8856Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 280050..280433 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8856.t1.stop1Gvermi8856.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 280050..280052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8856.t1.CDS1Gvermi8856.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 280050..280433 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8856.t1.exon1Gvermi8856.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 280050..280433 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8856.t1.start1Gvermi8856.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 280431..280433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8856.t1Gvermi8856.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 280050..280433 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8856.t1 ID=Gvermi8856.t1|Name=Gvermi8856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=128bp
MMAAEQGAPPPADFSQPTVFDKILAKEIPADIVFEDDHSLAFHDINPQSP
VHIIVIPKRRIPMLSMAQEGDKELLGHLMLTAAKVAQLENLQAGYRVLIN
NGKDGLQSVYHLHLHVIGGRKLKWGPF*
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spliced messenger RNA

>Gvermi8856.t1 ID=Gvermi8856.t1|Name=Gvermi8856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_2241:280050..280433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCCGCCGAGCAGGGCGCGCCGCCGCCGGCAGACTTCTCGCAGCC
AACAGTCTTCGACAAAATCCTCGCCAAGGAGATCCCCGCCGACATCGTGT
TTGAGGACGACCACAGCCTTGCCTTTCACGACATCAACCCGCAGAGCCCG
GTCCACATCATCGTCATCCCCAAGCGCCGTATACCCATGCTCTCCATGGC
CCAAGAGGGTGACAAGGAGCTGCTGGGCCACTTGATGCTGACCGCGGCCA
AGGTTGCCCAACTGGAAAACCTACAGGCCGGCTATCGCGTCCTCATCAAT
AACGGCAAGGACGGGCTGCAGAGCGTGTATCACCTTCATCTTCACGTGAT
CGGCGGCCGTAAGCTCAAGTGGGGTCCATTCTGA
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protein sequence of Gvermi8856.t1

>Gvermi8856.t1 ID=Gvermi8856.t1|Name=Gvermi8856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=128bp
MMAAEQGAPPPADFSQPTVFDKILAKEIPADIVFEDDHSLAFHDINPQSP
VHIIVIPKRRIPMLSMAQEGDKELLGHLMLTAAKVAQLENLQAGYRVLIN
NGKDGLQSVYHLHLHVIGGRKLKWGPF*
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mRNA from alignment at ScGOVlb_2241:280050..280433-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8856.t1 ID=Gvermi8856.t1|Name=Gvermi8856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_2241:280050..280433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCCGCCGAGCAGGGCGCGCCGCCGCCGGCAGACTTCTCGCAGCC
AACAGTCTTCGACAAAATCCTCGCCAAGGAGATCCCCGCCGACATCGTGT
TTGAGGACGACCACAGCCTTGCCTTTCACGACATCAACCCGCAGAGCCCG
GTCCACATCATCGTCATCCCCAAGCGCCGTATACCCATGCTCTCCATGGC
CCAAGAGGGTGACAAGGAGCTGCTGGGCCACTTGATGCTGACCGCGGCCA
AGGTTGCCCAACTGGAAAACCTACAGGCCGGCTATCGCGTCCTCATCAAT
AACGGCAAGGACGGGCTGCAGAGCGTGTATCACCTTCATCTTCACGTGAT
CGGCGGCCGTAAGCTCAAGTGGGGTCCATTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:280050..280433-

>Gvermi8856.t1 ID=Gvermi8856.t1|Name=Gvermi8856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=384bp|location=Sequence derived from alignment at ScGOVlb_2241:280050..280433- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCCGCCGAGCAGGGCGCGCCGCCGCCGGCAGACTTCTCGCAGCC
AACAGTCTTCGACAAAATCCTCGCCAAGGAGATCCCCGCCGACATCGTGT
TTGAGGACGACCACAGCCTTGCCTTTCACGACATCAACCCGCAGAGCCCG
GTCCACATCATCGTCATCCCCAAGCGCCGTATACCCATGCTCTCCATGGC
CCAAGAGGGTGACAAGGAGCTGCTGGGCCACTTGATGCTGACCGCGGCCA
AGGTTGCCCAACTGGAAAACCTACAGGCCGGCTATCGCGTCCTCATCAAT
AACGGCAAGGACGGGCTGCAGAGCGTGTATCACCTTCATCTTCACGTGAT
CGGCGGCCGTAAGCTCAAGTGGGGTCCATTCTGA
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