Gvermi8839.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8839.t1
Unique NameGvermi8839.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:239859..240611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT368CT
PFAMsPsbP
Max annot lvl2759|Eukaryota
Evalue3.29e-33
EggNOG OGs2E2MJ@1|root,2S9US@2759|Eukaryota
DescriptionPsbP
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8839Gvermi8839Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 239859..240611 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8839.t1.stop1Gvermi8839.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 239859..239861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8839.t1.CDS1Gvermi8839.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 239859..240611 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8839.t1.exon1Gvermi8839.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 239859..240611 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8839.t1.start1Gvermi8839.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 240609..240611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8839.t1Gvermi8839.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 239859..240611 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8839.t1 ID=Gvermi8839.t1|Name=Gvermi8839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=251bp
MSPSSAFISNNFRLLPSKNNLICSPQTAPRTTPPAKPSRLRRAVACMNSS
GQPASSDSGKTDRRAFLHLVALAAFSALPLSEAAFAEQPSFQTYNGPISL
GFSFTYPSNWNVKKKPIKTHLSEVLITSDADAATTAGLVVDSVKIPSIES
FGTPRQVGEKVLAVETKKESVNSATIVSTSSETKNGLTYYTLDYTVDSSR
GVKRYIAKVTVTGGQLYVLTTQAKLDNFDDQTRQTFAKMLDSFTVKKQYT
*
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spliced messenger RNA

>Gvermi8839.t1 ID=Gvermi8839.t1|Name=Gvermi8839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_2241:239859..240611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCGTCCTCAGCGTTCATCTCTAATAACTTTCGGCTCCTGCCATC
CAAGAATAACCTGATATGCTCCCCTCAGACTGCTCCTCGGACAACTCCGC
CCGCGAAGCCCTCTCGTTTACGCCGGGCAGTTGCATGTATGAACAGCTCC
GGACAGCCAGCGAGCAGTGACTCCGGGAAAACAGACAGAAGAGCATTTCT
GCACTTAGTCGCCCTTGCTGCGTTTTCAGCTCTTCCGCTCTCCGAGGCGG
CGTTCGCGGAGCAACCATCGTTTCAAACGTACAACGGGCCCATATCTCTG
GGATTCTCCTTCACGTATCCATCGAACTGGAACGTAAAGAAAAAGCCTAT
AAAAACTCACCTGAGCGAAGTTCTAATAACAAGTGATGCAGATGCGGCAA
CCACAGCCGGCCTGGTGGTAGATTCTGTCAAGATTCCTTCCATAGAAAGT
TTCGGAACGCCGCGGCAAGTCGGCGAAAAGGTGCTTGCCGTCGAAACTAA
GAAGGAAAGCGTAAACAGCGCAACAATTGTATCCACCTCCTCCGAAACCA
AGAATGGACTAACGTACTATACGCTGGACTACACCGTCGACTCCTCCAGA
GGCGTCAAACGGTACATTGCAAAGGTCACAGTTACAGGCGGCCAGTTATA
TGTGCTCACAACACAAGCAAAGCTGGACAATTTTGACGACCAGACTAGGC
AAACGTTTGCAAAAATGCTAGACTCGTTCACGGTGAAAAAACAATACACA
TAA
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protein sequence of Gvermi8839.t1

>Gvermi8839.t1 ID=Gvermi8839.t1|Name=Gvermi8839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MSPSSAFISNNFRLLPSKNNLICSPQTAPRTTPPAKPSRLRRAVACMNSS
GQPASSDSGKTDRRAFLHLVALAAFSALPLSEAAFAEQPSFQTYNGPISL
GFSFTYPSNWNVKKKPIKTHLSEVLITSDADAATTAGLVVDSVKIPSIES
FGTPRQVGEKVLAVETKKESVNSATIVSTSSETKNGLTYYTLDYTVDSSR
GVKRYIAKVTVTGGQLYVLTTQAKLDNFDDQTRQTFAKMLDSFTVKKQYT
*
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mRNA from alignment at ScGOVlb_2241:239859..240611-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8839.t1 ID=Gvermi8839.t1|Name=Gvermi8839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=753bp|location=Sequence derived from alignment at ScGOVlb_2241:239859..240611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGTCCTCAGCGTTCATCTCTAATAACTTTCGGCTCCTGCCATC
CAAGAATAACCTGATATGCTCCCCTCAGACTGCTCCTCGGACAACTCCGC
CCGCGAAGCCCTCTCGTTTACGCCGGGCAGTTGCATGTATGAACAGCTCC
GGACAGCCAGCGAGCAGTGACTCCGGGAAAACAGACAGAAGAGCATTTCT
GCACTTAGTCGCCCTTGCTGCGTTTTCAGCTCTTCCGCTCTCCGAGGCGG
CGTTCGCGGAGCAACCATCGTTTCAAACGTACAACGGGCCCATATCTCTG
GGATTCTCCTTCACGTATCCATCGAACTGGAACGTAAAGAAAAAGCCTAT
AAAAACTCACCTGAGCGAAGTTCTAATAACAAGTGATGCAGATGCGGCAA
CCACAGCCGGCCTGGTGGTAGATTCTGTCAAGATTCCTTCCATAGAAAGT
TTCGGAACGCCGCGGCAAGTCGGCGAAAAGGTGCTTGCCGTCGAAACTAA
GAAGGAAAGCGTAAACAGCGCAACAATTGTATCCACCTCCTCCGAAACCA
AGAATGGACTAACGTACTATACGCTGGACTACACCGTCGACTCCTCCAGA
GGCGTCAAACGGTACATTGCAAAGGTCACAGTTACAGGCGGCCAGTTATA
TGTGCTCACAACACAAGCAAAGCTGGACAATTTTGACGACCAGACTAGGC
AAACGTTTGCAAAAATGCTAGACTCGTTCACGGTGAAAAAACAATACACA
TAA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:239859..240611-

>Gvermi8839.t1 ID=Gvermi8839.t1|Name=Gvermi8839.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=753bp|location=Sequence derived from alignment at ScGOVlb_2241:239859..240611- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCGCCGTCCTCAGCGTTCATCTCTAATAACTTTCGGCTCCTGCCATC
CAAGAATAACCTGATATGCTCCCCTCAGACTGCTCCTCGGACAACTCCGC
CCGCGAAGCCCTCTCGTTTACGCCGGGCAGTTGCATGTATGAACAGCTCC
GGACAGCCAGCGAGCAGTGACTCCGGGAAAACAGACAGAAGAGCATTTCT
GCACTTAGTCGCCCTTGCTGCGTTTTCAGCTCTTCCGCTCTCCGAGGCGG
CGTTCGCGGAGCAACCATCGTTTCAAACGTACAACGGGCCCATATCTCTG
GGATTCTCCTTCACGTATCCATCGAACTGGAACGTAAAGAAAAAGCCTAT
AAAAACTCACCTGAGCGAAGTTCTAATAACAAGTGATGCAGATGCGGCAA
CCACAGCCGGCCTGGTGGTAGATTCTGTCAAGATTCCTTCCATAGAAAGT
TTCGGAACGCCGCGGCAAGTCGGCGAAAAGGTGCTTGCCGTCGAAACTAA
GAAGGAAAGCGTAAACAGCGCAACAATTGTATCCACCTCCTCCGAAACCA
AGAATGGACTAACGTACTATACGCTGGACTACACCGTCGACTCCTCCAGA
GGCGTCAAACGGTACATTGCAAAGGTCACAGTTACAGGCGGCCAGTTATA
TGTGCTCACAACACAAGCAAAGCTGGACAATTTTGACGACCAGACTAGGC
AAACGTTTGCAAAAATGCTAGACTCGTTCACGGTGAAAAAACAATACACA
TAA
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