Gvermi8847.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8847.t1
Unique Name	Gvermi8847.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2241	contig	ScGOVlb_2241:259843..261243 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005651392.1
PFAMs	Alg6_Alg8
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K03848
KEGG Reaction	R06262
KEGG Pathway	ko00510,ko01100,map00510,map01100
KEGG Module	M00055
Evalue	2.11e-98
EggNOG OGs	KOG2575@1\|root,KOG2575@2759\|Eukaryota,37RK3@33090\|Viridiplantae,34JDI@3041\|Chlorophyta
EC	2.4.1.267
Description	Belongs to the ALG6 ALG8 glucosyltransferase family
COG category	G
CAZy	GT57
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8847	Gvermi8847	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2241 259843..261243 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8847.t1.start1	Gvermi8847.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2241 259843..259845 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8847.t1.CDS1	Gvermi8847.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2241 259843..261243 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8847.t1.exon1	Gvermi8847.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2241 259843..261243 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8847.t1.stop1	Gvermi8847.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2241 261241..261243 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8847.t1	Gvermi8847.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2241 259843..261243 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2241:259843..261243+
coding sequence from alignment at ScGOVlb_2241:259843..261243+

mRNA sequence

>Gvermi8847.t1 ID=Gvermi8847.t1|Name=Gvermi8847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=467bp
MSGEKTPPTYGDFEAQRHWMEITLNLPPRHWYTNTTENDLSYWGLDYPPL
SAYVSLLTAYFISLADPAAVALHRSRGYETQLTRAAMRLSVIIADILVFF
PSLFILLSTVHHNSNRPSRFFSHQPVQLGRSLAFCLTLPALLMIDHAHFQ
YNNISLGLFMFSLACFLQQRDMLGAALFCSAIYFKQMLLYYAPCIFCLLV
GRMYRLSTSRGIKPAFVYASKILASIALVTCLTFAPWLSDRQLLFAAVAR
LFPTSRGLYEDKVANVWCSISVLFKANQWFSQQNLLLLCALATVAASLPF
CVALISNPSTTRILLAAFGCALSAFLFSFQVHEKQILIPLIPIAVLHSQF
PRLSAWMSFAAVFSMFPLLSREGSGTAYLATIAIHASVISFSATSMRTSA
QDHMCAKWIPLTTVAVTFAALGLNFALIFVAPPSNAPDILVLLNTAFACG
HFVMIYIFSLRYVFLY*

spliced messenger RNA

>Gvermi8847.t1 ID=Gvermi8847.t1|Name=Gvermi8847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_2241:259843..261243+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGCGAAAAAACGCCCCCCACGTATGGCGACTTCGAAGCTCAGCG
CCATTGGATGGAGATTACGCTCAATCTCCCGCCCCGCCACTGGTACACAA
ACACAACCGAGAACGATCTGTCGTACTGGGGTCTTGACTATCCGCCGCTC
TCTGCCTATGTGTCGCTTCTCACGGCCTACTTCATATCCCTCGCAGACCC
TGCCGCAGTTGCTCTCCATCGTTCACGCGGATATGAGACACAGCTAACTC
GCGCCGCCATGCGTCTCAGTGTCATTATTGCCGACATTCTTGTCTTCTTT
CCGTCTTTGTTCATCTTGCTTTCTACAGTACATCACAACAGCAACCGCCC
TTCGCGCTTCTTCTCTCATCAGCCAGTACAGCTTGGCAGATCACTCGCTT
TTTGTCTCACCCTCCCAGCACTGTTGATGATTGATCATGCTCACTTTCAG
TACAATAACATCAGTTTGGGGCTCTTCATGTTCTCACTTGCATGTTTCCT
ACAGCAAAGAGACATGTTGGGAGCTGCGCTTTTCTGCTCCGCCATTTACT
TCAAGCAGATGCTACTATACTACGCCCCCTGTATCTTTTGTCTTCTTGTC
GGTCGAATGTATCGACTGTCCACATCCCGCGGAATCAAACCGGCATTCGT
GTATGCGTCCAAGATACTGGCATCAATCGCTCTCGTCACATGCCTCACAT
TTGCTCCGTGGCTTTCTGACCGCCAGCTCCTTTTCGCTGCGGTAGCTCGA
CTTTTTCCGACATCAAGAGGTTTGTACGAGGATAAAGTAGCCAACGTGTG
GTGTTCAATCTCCGTGCTGTTCAAAGCGAACCAGTGGTTCTCGCAGCAAA
ACTTGTTGCTGCTTTGCGCACTGGCCACCGTCGCCGCTTCACTGCCGTTC
TGCGTGGCGTTGATTTCGAACCCTTCCACAACGAGAATTCTGCTCGCCGC
GTTCGGATGTGCTCTTAGTGCGTTCCTGTTCTCGTTTCAAGTACACGAGA
AGCAAATCCTCATTCCGCTCATTCCCATTGCTGTGCTCCATAGCCAGTTT
CCCCGATTGTCTGCATGGATGTCATTCGCTGCCGTGTTTTCCATGTTTCC
CTTGCTGTCTCGGGAAGGCTCAGGAACGGCGTATCTTGCAACGATTGCAA
TCCATGCATCCGTCATATCGTTTTCTGCGACCTCCATGCGCACTAGCGCC
CAGGACCACATGTGTGCGAAGTGGATTCCTCTCACAACTGTGGCGGTCAC
CTTCGCGGCATTAGGTCTGAATTTTGCTCTTATTTTCGTCGCTCCCCCAT
CAAATGCGCCGGATATCCTCGTCTTGCTCAATACGGCCTTCGCTTGTGGC
CACTTTGTCATGATCTACATTTTCTCTCTTCGATATGTATTTCTGTACTG
A

protein sequence of Gvermi8847.t1

>Gvermi8847.t1 ID=Gvermi8847.t1|Name=Gvermi8847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=467bp
MSGEKTPPTYGDFEAQRHWMEITLNLPPRHWYTNTTENDLSYWGLDYPPL
SAYVSLLTAYFISLADPAAVALHRSRGYETQLTRAAMRLSVIIADILVFF
PSLFILLSTVHHNSNRPSRFFSHQPVQLGRSLAFCLTLPALLMIDHAHFQ
YNNISLGLFMFSLACFLQQRDMLGAALFCSAIYFKQMLLYYAPCIFCLLV
GRMYRLSTSRGIKPAFVYASKILASIALVTCLTFAPWLSDRQLLFAAVAR
LFPTSRGLYEDKVANVWCSISVLFKANQWFSQQNLLLLCALATVAASLPF
CVALISNPSTTRILLAAFGCALSAFLFSFQVHEKQILIPLIPIAVLHSQF
PRLSAWMSFAAVFSMFPLLSREGSGTAYLATIAIHASVISFSATSMRTSA
QDHMCAKWIPLTTVAVTFAALGLNFALIFVAPPSNAPDILVLLNTAFACG
HFVMIYIFSLRYVFLY*

mRNA from alignment at ScGOVlb_2241:259843..261243+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8847.t1 ID=Gvermi8847.t1|Name=Gvermi8847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_2241:259843..261243+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGGCGAAAAAACGCCCCCCACGTATGGCGACTTCGAAGCTCAGCG
CCATTGGATGGAGATTACGCTCAATCTCCCGCCCCGCCACTGGTACACAA
ACACAACCGAGAACGATCTGTCGTACTGGGGTCTTGACTATCCGCCGCTC
TCTGCCTATGTGTCGCTTCTCACGGCCTACTTCATATCCCTCGCAGACCC
TGCCGCAGTTGCTCTCCATCGTTCACGCGGATATGAGACACAGCTAACTC
GCGCCGCCATGCGTCTCAGTGTCATTATTGCCGACATTCTTGTCTTCTTT
CCGTCTTTGTTCATCTTGCTTTCTACAGTACATCACAACAGCAACCGCCC
TTCGCGCTTCTTCTCTCATCAGCCAGTACAGCTTGGCAGATCACTCGCTT
TTTGTCTCACCCTCCCAGCACTGTTGATGATTGATCATGCTCACTTTCAG
TACAATAACATCAGTTTGGGGCTCTTCATGTTCTCACTTGCATGTTTCCT
ACAGCAAAGAGACATGTTGGGAGCTGCGCTTTTCTGCTCCGCCATTTACT
TCAAGCAGATGCTACTATACTACGCCCCCTGTATCTTTTGTCTTCTTGTC
GGTCGAATGTATCGACTGTCCACATCCCGCGGAATCAAACCGGCATTCGT
GTATGCGTCCAAGATACTGGCATCAATCGCTCTCGTCACATGCCTCACAT
TTGCTCCGTGGCTTTCTGACCGCCAGCTCCTTTTCGCTGCGGTAGCTCGA
CTTTTTCCGACATCAAGAGGTTTGTACGAGGATAAAGTAGCCAACGTGTG
GTGTTCAATCTCCGTGCTGTTCAAAGCGAACCAGTGGTTCTCGCAGCAAA
ACTTGTTGCTGCTTTGCGCACTGGCCACCGTCGCCGCTTCACTGCCGTTC
TGCGTGGCGTTGATTTCGAACCCTTCCACAACGAGAATTCTGCTCGCCGC
GTTCGGATGTGCTCTTAGTGCGTTCCTGTTCTCGTTTCAAGTACACGAGA
AGCAAATCCTCATTCCGCTCATTCCCATTGCTGTGCTCCATAGCCAGTTT
CCCCGATTGTCTGCATGGATGTCATTCGCTGCCGTGTTTTCCATGTTTCC
CTTGCTGTCTCGGGAAGGCTCAGGAACGGCGTATCTTGCAACGATTGCAA
TCCATGCATCCGTCATATCGTTTTCTGCGACCTCCATGCGCACTAGCGCC
CAGGACCACATGTGTGCGAAGTGGATTCCTCTCACAACTGTGGCGGTCAC
CTTCGCGGCATTAGGTCTGAATTTTGCTCTTATTTTCGTCGCTCCCCCAT
CAAATGCGCCGGATATCCTCGTCTTGCTCAATACGGCCTTCGCTTGTGGC
CACTTTGTCATGATCTACATTTTCTCTCTTCGATATGTATTTCTGTACTG
A

Coding sequence (CDS) from alignment at ScGOVlb_2241:259843..261243+

>Gvermi8847.t1 ID=Gvermi8847.t1|Name=Gvermi8847.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1401bp|location=Sequence derived from alignment at ScGOVlb_2241:259843..261243+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAGGCGAAAAAACGCCCCCCACGTATGGCGACTTCGAAGCTCAGCG
CCATTGGATGGAGATTACGCTCAATCTCCCGCCCCGCCACTGGTACACAA
ACACAACCGAGAACGATCTGTCGTACTGGGGTCTTGACTATCCGCCGCTC
TCTGCCTATGTGTCGCTTCTCACGGCCTACTTCATATCCCTCGCAGACCC
TGCCGCAGTTGCTCTCCATCGTTCACGCGGATATGAGACACAGCTAACTC
GCGCCGCCATGCGTCTCAGTGTCATTATTGCCGACATTCTTGTCTTCTTT
CCGTCTTTGTTCATCTTGCTTTCTACAGTACATCACAACAGCAACCGCCC
TTCGCGCTTCTTCTCTCATCAGCCAGTACAGCTTGGCAGATCACTCGCTT
TTTGTCTCACCCTCCCAGCACTGTTGATGATTGATCATGCTCACTTTCAG
TACAATAACATCAGTTTGGGGCTCTTCATGTTCTCACTTGCATGTTTCCT
ACAGCAAAGAGACATGTTGGGAGCTGCGCTTTTCTGCTCCGCCATTTACT
TCAAGCAGATGCTACTATACTACGCCCCCTGTATCTTTTGTCTTCTTGTC
GGTCGAATGTATCGACTGTCCACATCCCGCGGAATCAAACCGGCATTCGT
GTATGCGTCCAAGATACTGGCATCAATCGCTCTCGTCACATGCCTCACAT
TTGCTCCGTGGCTTTCTGACCGCCAGCTCCTTTTCGCTGCGGTAGCTCGA
CTTTTTCCGACATCAAGAGGTTTGTACGAGGATAAAGTAGCCAACGTGTG
GTGTTCAATCTCCGTGCTGTTCAAAGCGAACCAGTGGTTCTCGCAGCAAA
ACTTGTTGCTGCTTTGCGCACTGGCCACCGTCGCCGCTTCACTGCCGTTC
TGCGTGGCGTTGATTTCGAACCCTTCCACAACGAGAATTCTGCTCGCCGC
GTTCGGATGTGCTCTTAGTGCGTTCCTGTTCTCGTTTCAAGTACACGAGA
AGCAAATCCTCATTCCGCTCATTCCCATTGCTGTGCTCCATAGCCAGTTT
CCCCGATTGTCTGCATGGATGTCATTCGCTGCCGTGTTTTCCATGTTTCC
CTTGCTGTCTCGGGAAGGCTCAGGAACGGCGTATCTTGCAACGATTGCAA
TCCATGCATCCGTCATATCGTTTTCTGCGACCTCCATGCGCACTAGCGCC
CAGGACCACATGTGTGCGAAGTGGATTCCTCTCACAACTGTGGCGGTCAC
CTTCGCGGCATTAGGTCTGAATTTTGCTCTTATTTTCGTCGCTCCCCCAT
CAAATGCGCCGGATATCCTCGTCTTGCTCAATACGGCCTTCGCTTGTGGC
CACTTTGTCATGATCTACATTTTCTCTCTTCGATATGTATTTCTGTACTG
A