Gvermi8846.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8846.t1
Unique NameGvermi8846.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:256427..257668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8846Gvermi8846Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 256427..257668 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8846.t1.stop1Gvermi8846.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 256427..256429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8846.t1.CDS1Gvermi8846.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 256427..257668 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8846.t1.exon1Gvermi8846.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 256427..257668 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8846.t1.start1Gvermi8846.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 257666..257668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8846.t1Gvermi8846.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 256427..257668 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8846.t1 ID=Gvermi8846.t1|Name=Gvermi8846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp
MPSWYSEDELNLLRYTPMSPDFRTTNGDFVSPLDLPPGTPRPYQARNRRT
PSRSIPKPTIAFANYETKSRAPQLVVPAPCPDGPKPVQWLHSQHALKLLR
GTSRLARATKYDRTVACFNLYPATRADLQVNRLIWQVAQNGEYDPAQGNL
LLQNNVLSLAMPKEFYDFLHDITQEELKHSMLEVLALIAEDEDPEGLSLM
RSELEPSIWDDLVHYMDTCDVMDQSRMDSKTKAGRKLMIAVESLLRFCYL
SPWKIDVYASYITPQELNSAFQEMQNTMGSPQADFESPRFSVDRRLVRSS
ARRPVASSCQTSRLIVSTHANISDRNRVFWKLFQDWRRYRKVLVQFLGLS
PAKAVHSLVDSISNGTQEEAWERAETVLACWCAEGNLFSALPKEVVFNTL
APHVLYVSCSSES*
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spliced messenger RNA

>Gvermi8846.t1 ID=Gvermi8846.t1|Name=Gvermi8846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at ScGOVlb_2241:256427..257668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCTTGGTACTCCGAGGATGAGCTCAACTTGCTGCGCTACACTCC
CATGTCCCCTGATTTCCGAACCACCAACGGCGATTTTGTTTCGCCGCTCG
ACCTACCGCCGGGAACGCCCCGCCCATACCAAGCCCGCAATCGACGAACG
CCCAGCCGTTCCATTCCCAAGCCCACAATAGCCTTTGCCAACTACGAGAC
CAAAAGCCGCGCCCCGCAACTCGTCGTCCCGGCCCCGTGCCCGGACGGCC
CGAAACCGGTGCAATGGCTCCACTCGCAGCACGCCTTGAAGCTTCTTCGA
GGCACCAGCCGCCTGGCGCGAGCCACCAAGTACGACCGCACAGTCGCCTG
CTTCAACTTGTACCCGGCCACGCGCGCCGACCTGCAAGTCAACCGCCTCA
TCTGGCAGGTGGCCCAAAACGGCGAGTACGACCCGGCTCAGGGCAATCTC
TTGCTGCAGAACAACGTGCTGTCGCTGGCCATGCCCAAGGAGTTTTACGA
CTTTCTGCACGACATCACGCAGGAGGAGCTCAAGCACAGCATGCTGGAAG
TGCTCGCTTTGATAGCGGAGGACGAGGACCCGGAGGGCTTGTCGCTCATG
CGCTCCGAGCTGGAGCCCTCAATATGGGACGATCTCGTGCACTACATGGA
CACATGTGACGTGATGGATCAAAGCAGAATGGACTCGAAGACCAAGGCCG
GCCGCAAGCTTATGATTGCCGTTGAATCCTTGCTCCGTTTCTGTTACCTC
TCGCCGTGGAAGATTGATGTTTATGCATCGTACATCACGCCGCAGGAGCT
CAACAGCGCGTTTCAGGAAATGCAAAACACGATGGGATCGCCCCAAGCCG
ATTTCGAGTCGCCGCGCTTCTCGGTTGACCGCCGTCTGGTGCGGTCGAGC
GCGCGAAGACCGGTGGCGTCTTCGTGCCAAACGTCGCGTCTAATCGTCTC
TACGCATGCAAACATCTCCGATCGCAACCGGGTGTTCTGGAAGCTGTTTC
AAGATTGGCGCAGATATCGAAAAGTTTTGGTCCAGTTCCTTGGACTTTCG
CCAGCGAAAGCTGTGCACAGCTTGGTCGATTCTATATCAAACGGGACTCA
GGAAGAAGCTTGGGAGCGCGCAGAGACAGTTCTTGCTTGTTGGTGTGCGG
AAGGCAACCTGTTCTCAGCTCTTCCAAAAGAAGTCGTCTTCAATACTCTC
GCTCCCCACGTGCTGTACGTCAGCTGCAGCTCAGAGAGTTAG
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protein sequence of Gvermi8846.t1

>Gvermi8846.t1 ID=Gvermi8846.t1|Name=Gvermi8846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=414bp
MPSWYSEDELNLLRYTPMSPDFRTTNGDFVSPLDLPPGTPRPYQARNRRT
PSRSIPKPTIAFANYETKSRAPQLVVPAPCPDGPKPVQWLHSQHALKLLR
GTSRLARATKYDRTVACFNLYPATRADLQVNRLIWQVAQNGEYDPAQGNL
LLQNNVLSLAMPKEFYDFLHDITQEELKHSMLEVLALIAEDEDPEGLSLM
RSELEPSIWDDLVHYMDTCDVMDQSRMDSKTKAGRKLMIAVESLLRFCYL
SPWKIDVYASYITPQELNSAFQEMQNTMGSPQADFESPRFSVDRRLVRSS
ARRPVASSCQTSRLIVSTHANISDRNRVFWKLFQDWRRYRKVLVQFLGLS
PAKAVHSLVDSISNGTQEEAWERAETVLACWCAEGNLFSALPKEVVFNTL
APHVLYVSCSSES*
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mRNA from alignment at ScGOVlb_2241:256427..257668-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8846.t1 ID=Gvermi8846.t1|Name=Gvermi8846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at ScGOVlb_2241:256427..257668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTTGGTACTCCGAGGATGAGCTCAACTTGCTGCGCTACACTCC
CATGTCCCCTGATTTCCGAACCACCAACGGCGATTTTGTTTCGCCGCTCG
ACCTACCGCCGGGAACGCCCCGCCCATACCAAGCCCGCAATCGACGAACG
CCCAGCCGTTCCATTCCCAAGCCCACAATAGCCTTTGCCAACTACGAGAC
CAAAAGCCGCGCCCCGCAACTCGTCGTCCCGGCCCCGTGCCCGGACGGCC
CGAAACCGGTGCAATGGCTCCACTCGCAGCACGCCTTGAAGCTTCTTCGA
GGCACCAGCCGCCTGGCGCGAGCCACCAAGTACGACCGCACAGTCGCCTG
CTTCAACTTGTACCCGGCCACGCGCGCCGACCTGCAAGTCAACCGCCTCA
TCTGGCAGGTGGCCCAAAACGGCGAGTACGACCCGGCTCAGGGCAATCTC
TTGCTGCAGAACAACGTGCTGTCGCTGGCCATGCCCAAGGAGTTTTACGA
CTTTCTGCACGACATCACGCAGGAGGAGCTCAAGCACAGCATGCTGGAAG
TGCTCGCTTTGATAGCGGAGGACGAGGACCCGGAGGGCTTGTCGCTCATG
CGCTCCGAGCTGGAGCCCTCAATATGGGACGATCTCGTGCACTACATGGA
CACATGTGACGTGATGGATCAAAGCAGAATGGACTCGAAGACCAAGGCCG
GCCGCAAGCTTATGATTGCCGTTGAATCCTTGCTCCGTTTCTGTTACCTC
TCGCCGTGGAAGATTGATGTTTATGCATCGTACATCACGCCGCAGGAGCT
CAACAGCGCGTTTCAGGAAATGCAAAACACGATGGGATCGCCCCAAGCCG
ATTTCGAGTCGCCGCGCTTCTCGGTTGACCGCCGTCTGGTGCGGTCGAGC
GCGCGAAGACCGGTGGCGTCTTCGTGCCAAACGTCGCGTCTAATCGTCTC
TACGCATGCAAACATCTCCGATCGCAACCGGGTGTTCTGGAAGCTGTTTC
AAGATTGGCGCAGATATCGAAAAGTTTTGGTCCAGTTCCTTGGACTTTCG
CCAGCGAAAGCTGTGCACAGCTTGGTCGATTCTATATCAAACGGGACTCA
GGAAGAAGCTTGGGAGCGCGCAGAGACAGTTCTTGCTTGTTGGTGTGCGG
AAGGCAACCTGTTCTCAGCTCTTCCAAAAGAAGTCGTCTTCAATACTCTC
GCTCCCCACGTGCTGTACGTCAGCTGCAGCTCAGAGAGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2241:256427..257668-

>Gvermi8846.t1 ID=Gvermi8846.t1|Name=Gvermi8846.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1242bp|location=Sequence derived from alignment at ScGOVlb_2241:256427..257668- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCTTGGTACTCCGAGGATGAGCTCAACTTGCTGCGCTACACTCC
CATGTCCCCTGATTTCCGAACCACCAACGGCGATTTTGTTTCGCCGCTCG
ACCTACCGCCGGGAACGCCCCGCCCATACCAAGCCCGCAATCGACGAACG
CCCAGCCGTTCCATTCCCAAGCCCACAATAGCCTTTGCCAACTACGAGAC
CAAAAGCCGCGCCCCGCAACTCGTCGTCCCGGCCCCGTGCCCGGACGGCC
CGAAACCGGTGCAATGGCTCCACTCGCAGCACGCCTTGAAGCTTCTTCGA
GGCACCAGCCGCCTGGCGCGAGCCACCAAGTACGACCGCACAGTCGCCTG
CTTCAACTTGTACCCGGCCACGCGCGCCGACCTGCAAGTCAACCGCCTCA
TCTGGCAGGTGGCCCAAAACGGCGAGTACGACCCGGCTCAGGGCAATCTC
TTGCTGCAGAACAACGTGCTGTCGCTGGCCATGCCCAAGGAGTTTTACGA
CTTTCTGCACGACATCACGCAGGAGGAGCTCAAGCACAGCATGCTGGAAG
TGCTCGCTTTGATAGCGGAGGACGAGGACCCGGAGGGCTTGTCGCTCATG
CGCTCCGAGCTGGAGCCCTCAATATGGGACGATCTCGTGCACTACATGGA
CACATGTGACGTGATGGATCAAAGCAGAATGGACTCGAAGACCAAGGCCG
GCCGCAAGCTTATGATTGCCGTTGAATCCTTGCTCCGTTTCTGTTACCTC
TCGCCGTGGAAGATTGATGTTTATGCATCGTACATCACGCCGCAGGAGCT
CAACAGCGCGTTTCAGGAAATGCAAAACACGATGGGATCGCCCCAAGCCG
ATTTCGAGTCGCCGCGCTTCTCGGTTGACCGCCGTCTGGTGCGGTCGAGC
GCGCGAAGACCGGTGGCGTCTTCGTGCCAAACGTCGCGTCTAATCGTCTC
TACGCATGCAAACATCTCCGATCGCAACCGGGTGTTCTGGAAGCTGTTTC
AAGATTGGCGCAGATATCGAAAAGTTTTGGTCCAGTTCCTTGGACTTTCG
CCAGCGAAAGCTGTGCACAGCTTGGTCGATTCTATATCAAACGGGACTCA
GGAAGAAGCTTGGGAGCGCGCAGAGACAGTTCTTGCTTGTTGGTGTGCGG
AAGGCAACCTGTTCTCAGCTCTTCCAAAAGAAGTCGTCTTCAATACTCTC
GCTCCCCACGTGCTGTACGTCAGCTGCAGCTCAGAGAGTTAG
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