Gvermi8840.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8840.t1
Unique NameGvermi8840.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length478
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:241919..243352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8840Gvermi8840Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 241919..243352 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8840.t1.start1Gvermi8840.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 241919..241921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8840.t1.CDS1Gvermi8840.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 241919..243352 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8840.t1.exon1Gvermi8840.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 241919..243352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8840.t1.stop1Gvermi8840.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 243350..243352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8840.t1Gvermi8840.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 241919..243352 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8840.t1 ID=Gvermi8840.t1|Name=Gvermi8840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=478bp
MECGITSLLKLAFKRQQLFSVLDGVDQGLKNAFNVNPVVAMRWLSHEWIT
LPPNLIQRCWQQSLGNIDPDDHQVLVESRREEAYEINELLNDVGRVCSGV
SIRSLLCSLDDSDCIETVNLDTLGDSVVDRLLTEKMDSSPATTPLKIPVL
PPVEEQLKAFAIVRQILDQRGMTDKKLRAVVRDVQREIRIELTAQTGRNT
LFSLERSNQLPQSIQARQVEKTQHAQHIQQSPKRKAPPSSQLNLQPNQFQ
RLRPSPQHQQSPKSSQSHQSQSSEHSENSQPSEQTKHVQRSHCLEKNYRT
SSPVQVQGSAAASLLSCSARTRSDVKSSEVPSFDHNKISTGMESRVLVST
GLPKDSVMQVDSPQLQGEHANVGPTSNVPIAPSDDERQVRDEENLISTEL
AKDSEMKSDALSLEGEHANIGPNSDIPITLSDNEPQIRDEESTARTKATV
PHKDIQSSEEDMQRKTGRESERVSEIS*
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spliced messenger RNA

>Gvermi8840.t1 ID=Gvermi8840.t1|Name=Gvermi8840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at ScGOVlb_2241:241919..243352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atggaatgtggaatcacatcccttctcaagctggcgtttaaaagacaaCA
GCTGTTTAGCGTTCTCGATGGCGTTGATCAAGGCCTCAAAAATGCCTTTA
ATGTTAATCCAGTTGTTGCCATGAGATGGCTTAGTCATGAATGGATAACA
CTGCCACCCAACCTGATTCAGAGATGCTGGCAGCAAAGTTTGGGAAACAT
CGACCCCGATGATCATCAAGTTCTCGTCGAGAGCAGACGTGAAGAAGCTT
ATGAAATCAATGAATTGTTGAACGATGTGGGGAGGGTCTGTAGTGGTGTC
AGCATTAGAAGCCTACTTTGTTCACTTGACGATAGTGACTGCATCGAAAC
TGTCAACTTGGATACCCTTGGTGATTCCGTTGTGGACCGATTACTTACTG
AGAAGATGGACTCATCACCGGCCACTACGCCTCTCAAGATTCCTGTACTA
CCACCAGTTGAAGAACAGCTTAAGGCTTTCGCCATTGTCCGGCAGATCTT
GGATCAACGAGGTATGACTGACAAAAAGCTTCGGGCAGTTGTTCGTGATG
TTCAACGTGAGATTCGTATCGAACTTACTGCTCAGACCGGCAGAAACACG
CTCTTTAGTCTTGAAAGATCCAACCAGTTGCCCCAGAGTATTCAGGCTCG
ACAAGTCGAAAAAACTCAACACGCACAGCACATTCAACAATCTCCAAAAA
GAAAGGCACCTCCTTCGTCTCAGCTGAATTTGCAACCAAATCAATTCCAA
AGGTTACGGCCGTCTCCACAGCATCAGCAATCCCCAAAATCATCCCAGTC
TCACCAGTCTCAAAGTTCTGAGCATTCTGAGAATTCTCAACCCTCAGAAC
AAACTAAACATGTGCAACGAAGCCATTGTTTGGAAAAGAACTACCGCACT
TCATCTCCCGTTCAAGTTCAGGGTTCAGCTGCTGCATCACTTTTGAGTTG
TTCTGCCAGAACCCGTTCAGATGTCAAGAGCAGTGAGGTTCCATCTTTTG
ATCACAATAAGATATCAACAGGTATGGAATCAAGAGTATTGGTATCAACA
GGGTTGCCGAAAGATTCGGTAATGCAAGTCGATTCCCCACAGCTTCAGGG
AGAACATGCAAACGTTGGTCCGACTTCCAACGTTCCTATCGCCCCCTCCG
ACGACGAACGCCAAGTTAGAGACGAAGAAAATTTGATATCAACAGAATTG
GCGAAAGATTCGGAAATGAAAAGCGATGCCCTGTCGCTAGAGGGTGAACA
TGCAAATATCGGTCCGAACTCTGATATCCCTATCACCCTCTCTGACAACG
AACCCCAAATTAGAGACGAAGAATCAACTGCGAGAACTAAAGCAACTGTG
CCACACAAAGATATCCAGTCTAGTGAGGAGGACATGCAAAGGAAAACGGG
TCGCGAATCAGAGAGAGTGTCGGAGATATCATGA
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protein sequence of Gvermi8840.t1

>Gvermi8840.t1 ID=Gvermi8840.t1|Name=Gvermi8840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=478bp
MECGITSLLKLAFKRQQLFSVLDGVDQGLKNAFNVNPVVAMRWLSHEWIT
LPPNLIQRCWQQSLGNIDPDDHQVLVESRREEAYEINELLNDVGRVCSGV
SIRSLLCSLDDSDCIETVNLDTLGDSVVDRLLTEKMDSSPATTPLKIPVL
PPVEEQLKAFAIVRQILDQRGMTDKKLRAVVRDVQREIRIELTAQTGRNT
LFSLERSNQLPQSIQARQVEKTQHAQHIQQSPKRKAPPSSQLNLQPNQFQ
RLRPSPQHQQSPKSSQSHQSQSSEHSENSQPSEQTKHVQRSHCLEKNYRT
SSPVQVQGSAAASLLSCSARTRSDVKSSEVPSFDHNKISTGMESRVLVST
GLPKDSVMQVDSPQLQGEHANVGPTSNVPIAPSDDERQVRDEENLISTEL
AKDSEMKSDALSLEGEHANIGPNSDIPITLSDNEPQIRDEESTARTKATV
PHKDIQSSEEDMQRKTGRESERVSEIS*
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mRNA from alignment at ScGOVlb_2241:241919..243352+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8840.t1 ID=Gvermi8840.t1|Name=Gvermi8840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1434bp|location=Sequence derived from alignment at ScGOVlb_2241:241919..243352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggaatgtggaatcacatcccttctcaagctggcgtttaaaagacaaCA
GCTGTTTAGCGTTCTCGATGGCGTTGATCAAGGCCTCAAAAATGCCTTTA
ATGTTAATCCAGTTGTTGCCATGAGATGGCTTAGTCATGAATGGATAACA
CTGCCACCCAACCTGATTCAGAGATGCTGGCAGCAAAGTTTGGGAAACAT
CGACCCCGATGATCATCAAGTTCTCGTCGAGAGCAGACGTGAAGAAGCTT
ATGAAATCAATGAATTGTTGAACGATGTGGGGAGGGTCTGTAGTGGTGTC
AGCATTAGAAGCCTACTTTGTTCACTTGACGATAGTGACTGCATCGAAAC
TGTCAACTTGGATACCCTTGGTGATTCCGTTGTGGACCGATTACTTACTG
AGAAGATGGACTCATCACCGGCCACTACGCCTCTCAAGATTCCTGTACTA
CCACCAGTTGAAGAACAGCTTAAGGCTTTCGCCATTGTCCGGCAGATCTT
GGATCAACGAGGTATGACTGACAAAAAGCTTCGGGCAGTTGTTCGTGATG
TTCAACGTGAGATTCGTATCGAACTTACTGCTCAGACCGGCAGAAACACG
CTCTTTAGTCTTGAAAGATCCAACCAGTTGCCCCAGAGTATTCAGGCTCG
ACAAGTCGAAAAAACTCAACACGCACAGCACATTCAACAATCTCCAAAAA
GAAAGGCACCTCCTTCGTCTCAGCTGAATTTGCAACCAAATCAATTCCAA
AGGTTACGGCCGTCTCCACAGCATCAGCAATCCCCAAAATCATCCCAGTC
TCACCAGTCTCAAAGTTCTGAGCATTCTGAGAATTCTCAACCCTCAGAAC
AAACTAAACATGTGCAACGAAGCCATTGTTTGGAAAAGAACTACCGCACT
TCATCTCCCGTTCAAGTTCAGGGTTCAGCTGCTGCATCACTTTTGAGTTG
TTCTGCCAGAACCCGTTCAGATGTCAAGAGCAGTGAGGTTCCATCTTTTG
ATCACAATAAGATATCAACAGGTATGGAATCAAGAGTATTGGTATCAACA
GGGTTGCCGAAAGATTCGGTAATGCAAGTCGATTCCCCACAGCTTCAGGG
AGAACATGCAAACGTTGGTCCGACTTCCAACGTTCCTATCGCCCCCTCCG
ACGACGAACGCCAAGTTAGAGACGAAGAAAATTTGATATCAACAGAATTG
GCGAAAGATTCGGAAATGAAAAGCGATGCCCTGTCGCTAGAGGGTGAACA
TGCAAATATCGGTCCGAACTCTGATATCCCTATCACCCTCTCTGACAACG
AACCCCAAATTAGAGACGAAGAATCAACTGCGAGAACTAAAGCAACTGTG
CCACACAAAGATATCCAGTCTAGTGAGGAGGACATGCAAAGGAAAACGGG
TCGCGAATCAGAGAGAGTGTCGGAGATATCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:241919..243352+

>Gvermi8840.t1 ID=Gvermi8840.t1|Name=Gvermi8840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1434bp|location=Sequence derived from alignment at ScGOVlb_2241:241919..243352+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atggaatgtggaatcacatcccttctcaagctggcgtttaaaagacaaCA
GCTGTTTAGCGTTCTCGATGGCGTTGATCAAGGCCTCAAAAATGCCTTTA
ATGTTAATCCAGTTGTTGCCATGAGATGGCTTAGTCATGAATGGATAACA
CTGCCACCCAACCTGATTCAGAGATGCTGGCAGCAAAGTTTGGGAAACAT
CGACCCCGATGATCATCAAGTTCTCGTCGAGAGCAGACGTGAAGAAGCTT
ATGAAATCAATGAATTGTTGAACGATGTGGGGAGGGTCTGTAGTGGTGTC
AGCATTAGAAGCCTACTTTGTTCACTTGACGATAGTGACTGCATCGAAAC
TGTCAACTTGGATACCCTTGGTGATTCCGTTGTGGACCGATTACTTACTG
AGAAGATGGACTCATCACCGGCCACTACGCCTCTCAAGATTCCTGTACTA
CCACCAGTTGAAGAACAGCTTAAGGCTTTCGCCATTGTCCGGCAGATCTT
GGATCAACGAGGTATGACTGACAAAAAGCTTCGGGCAGTTGTTCGTGATG
TTCAACGTGAGATTCGTATCGAACTTACTGCTCAGACCGGCAGAAACACG
CTCTTTAGTCTTGAAAGATCCAACCAGTTGCCCCAGAGTATTCAGGCTCG
ACAAGTCGAAAAAACTCAACACGCACAGCACATTCAACAATCTCCAAAAA
GAAAGGCACCTCCTTCGTCTCAGCTGAATTTGCAACCAAATCAATTCCAA
AGGTTACGGCCGTCTCCACAGCATCAGCAATCCCCAAAATCATCCCAGTC
TCACCAGTCTCAAAGTTCTGAGCATTCTGAGAATTCTCAACCCTCAGAAC
AAACTAAACATGTGCAACGAAGCCATTGTTTGGAAAAGAACTACCGCACT
TCATCTCCCGTTCAAGTTCAGGGTTCAGCTGCTGCATCACTTTTGAGTTG
TTCTGCCAGAACCCGTTCAGATGTCAAGAGCAGTGAGGTTCCATCTTTTG
ATCACAATAAGATATCAACAGGTATGGAATCAAGAGTATTGGTATCAACA
GGGTTGCCGAAAGATTCGGTAATGCAAGTCGATTCCCCACAGCTTCAGGG
AGAACATGCAAACGTTGGTCCGACTTCCAACGTTCCTATCGCCCCCTCCG
ACGACGAACGCCAAGTTAGAGACGAAGAAAATTTGATATCAACAGAATTG
GCGAAAGATTCGGAAATGAAAAGCGATGCCCTGTCGCTAGAGGGTGAACA
TGCAAATATCGGTCCGAACTCTGATATCCCTATCACCCTCTCTGACAACG
AACCCCAAATTAGAGACGAAGAATCAACTGCGAGAACTAAAGCAACTGTG
CCACACAAAGATATCCAGTCTAGTGAGGAGGACATGCAAAGGAAAACGGG
TCGCGAATCAGAGAGAGTGTCGGAGATATCATGA
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