Gvermi8859.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8859.t1
Unique NameGvermi8859.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:286771..287381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708798.1
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
Evalue1.66e-30
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8859Gvermi8859Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 286771..287381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1Gvermi8859.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 286771..287381 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1.start1Gvermi8859.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 286771..286773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1.CDS1Gvermi8859.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 286771..287267 +
Gvermi8859.t1.CDS2Gvermi8859.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 287357..287381 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1.exon1Gvermi8859.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 286771..287267 +
Gvermi8859.t1.exon2Gvermi8859.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 287357..287381 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1.intron1Gvermi8859.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 287268..287356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8859.t1.stop1Gvermi8859.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 287379..287381 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8859.t1 ID=Gvermi8859.t1|Name=Gvermi8859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=174bp
MILAALSCTTPSAVLAYSSPYKPSENESKPLPERLYDAKARSTVKLPSGL
EYFDLTVGGGEEAKRNSQVWIYYTTRLRGLNGIKLDSSYDEKLPSAFSFR
VGEDNVVEGLSELVEGMQVGGKRRGVLPPQIAYRSVEQRPVVRDFFAKRR
LLSVLETKRDATIVFDVELVKLR*
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spliced messenger RNA

>Gvermi8859.t1 ID=Gvermi8859.t1|Name=Gvermi8859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp|location=Sequence derived from alignment at ScGOVlb_2241:286771..287381+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATTAGCGGCTCTAAGCTGCACGACTCCGAGCGCAGTGCTGGCGTA
CTCGTCGCCGTACAAGCCTTCAGAAAACGAATCAAAGCCGCTGCCAGAGC
GGCTGTACGATGCGAAGGCGCGAAGCACGGTGAAGCTGCCGTCGGGGCTG
GAGTACTTCGACCTGACGGTCGGGGGCGGCGAGGAGGCGAAGCGAAACTC
ACAGGTTTGGATTTACTACACGACGCGGCTACGAGGGCTGAACGGCATCA
AGCTGGACAGCTCGTACGACGAGAAGCTGCCGTCGGCGTTCAGCTTTCGC
GTGGGGGAGGACAACGTTGTGGAGGGGCTGAGCGAGCTGGTGGAGGGCAT
GCAGGTGGGCGGGAAGCGAAGGGGCGTGCTGCCGCCGCAGATCGCGTACA
GGAGCGTGGAGCAGAGACCGGTGGTGAGGGACTTCTTCGCCAAGCGGCGG
CTGCTGAGCGTGCTGGAAACGAAGCGGGACGCGACGATCGTGTTCGACGT
GGAGCTGGTCAAGTTGCGGTGA
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protein sequence of Gvermi8859.t1

>Gvermi8859.t1 ID=Gvermi8859.t1|Name=Gvermi8859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=174bp
MILAALSCTTPSAVLAYSSPYKPSENESKPLPERLYDAKARSTVKLPSGL
EYFDLTVGGGEEAKRNSQVWIYYTTRLRGLNGIKLDSSYDEKLPSAFSFR
VGEDNVVEGLSELVEGMQVGGKRRGVLPPQIAYRSVEQRPVVRDFFAKRR
LLSVLETKRDATIVFDVELVKLR*
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mRNA from alignment at ScGOVlb_2241:286771..287381+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8859.t1 ID=Gvermi8859.t1|Name=Gvermi8859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=611bp|location=Sequence derived from alignment at ScGOVlb_2241:286771..287381+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATTAGCGGCTCTAAGCTGCACGACTCCGAGCGCAGTGCTGGCGTA
CTCGTCGCCGTACAAGCCTTCAGAAAACGAATCAAAGCCGCTGCCAGAGC
GGCTGTACGATGCGAAGGCGCGAAGCACGGTGAAGCTGCCGTCGGGGCTG
GAGTACTTCGACCTGACGGTCGGGGGCGGCGAGGAGGCGAAGCGAAACTC
ACAGGTTTGGATTTACTACACGACGCGGCTACGAGGGCTGAACGGCATCA
AGCTGGACAGCTCGTACGACGAGAAGCTGCCGTCGGCGTTCAGCTTTCGC
GTGGGGGAGGACAACGTTGTGGAGGGGCTGAGCGAGCTGGTGGAGGGCAT
GCAGGTGGGCGGGAAGCGAAGGGGCGTGCTGCCGCCGCAGATCGCGTACA
GGAGCGTGGAGCAGAGACCGGTGGTGAGGGACTTCTTCGCCAAGCGGCGG
CTGCTGAGCGTGCTGGAAACGAAGCGGGACGCGACGATCGTGTTCGAGTA
AGTTGGGCGCGCGCGGAGCGGCAGCGCAGCAACGAGCGCGGCAGAGCACT
AACGCGGGAGGAGCTGTTTACCGAACCGGCGCGCAGCGTGGAGCTGGTCA
AGTTGCGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:286771..287381+

>Gvermi8859.t1 ID=Gvermi8859.t1|Name=Gvermi8859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=522bp|location=Sequence derived from alignment at ScGOVlb_2241:286771..287381+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATTAGCGGCTCTAAGCTGCACGACTCCGAGCGCAGTGCTGGCGTA
CTCGTCGCCGTACAAGCCTTCAGAAAACGAATCAAAGCCGCTGCCAGAGC
GGCTGTACGATGCGAAGGCGCGAAGCACGGTGAAGCTGCCGTCGGGGCTG
GAGTACTTCGACCTGACGGTCGGGGGCGGCGAGGAGGCGAAGCGAAACTC
ACAGGTTTGGATTTACTACACGACGCGGCTACGAGGGCTGAACGGCATCA
AGCTGGACAGCTCGTACGACGAGAAGCTGCCGTCGGCGTTCAGCTTTCGC
GTGGGGGAGGACAACGTTGTGGAGGGGCTGAGCGAGCTGGTGGAGGGCAT
GCAGGTGGGCGGGAAGCGAAGGGGCGTGCTGCCGCCGCAGATCGCGTACA
GGAGCGTGGAGCAGAGACCGGTGGTGAGGGACTTCTTCGCCAAGCGGCGG
CTGCTGAGCGTGCTGGAAACGAAGCGGGACGCGACGATCGTGTTCGACGT
GGAGCTGGTCAAGTTGCGGTGA
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