Gvermi8852.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8852.t1
Unique NameGvermi8852.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length260
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:272057..272836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002679357.1
PFAMs2OG-FeII_Oxy_2
Max annot lvl2759|Eukaryota
KEGG koko:K10766,ko:K10770
Evalue3.35e-12
EggNOG OGsCOG3145@1|root,KOG4176@2759|Eukaryota
EC2.1.1.229
Descriptiondioxygenase activity
COG categoryL
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8852Gvermi8852Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 272057..272836 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8852.t1.start1Gvermi8852.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 272057..272059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8852.t1.CDS1Gvermi8852.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 272057..272836 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8852.t1.exon1Gvermi8852.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 272057..272836 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8852.t1.stop1Gvermi8852.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 272834..272836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8852.t1Gvermi8852.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 272057..272836 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8852.t1 ID=Gvermi8852.t1|Name=Gvermi8852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=260bp
MAADRFCLPSLFPSAKSRPSSVPGFILREDAFTSEEEAALIHAVDTSSAQ
WTRRRTRITKNYGPYYFYQERDTAEGRFRYTDGKIMHTPLPDFLHTLVMP
IITREVPEISAFQPNQLHVALYKKEEQSKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFVRPKDGKKRVLHLPRRCVYVMTGESHHEWRHGILKGQTSGDR
VSFTLREVRKLAVEDGARVKKSSHMPSAKSIRDQAMRDERAHRREMDRPN
INLADSLGT*
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spliced messenger RNA

>Gvermi8852.t1 ID=Gvermi8852.t1|Name=Gvermi8852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_2241:272057..272836+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGATCGCTTTTGTTTGCCTTCCCTCTTTCCGTCGGCCAAGTC
CCGCCCGAGCTCCGTGCCGGGGTTCATTCTCCGAGAAGATGCATTCACCT
CTGAGGAGGAGGCAGCGCTCATTCACGCCGTGGATACGTCGTCTGCGCAA
TGGACCCGGCGTCGCACCAGAATCACCAAGAACTACGGGCCATACTATTT
TTACCAGGAGCGCGACACGGCCGAGGGGCGTTTTCGATACACCGACGGCA
AGATCATGCACACGCCGCTTCCCGACTTTCTCCACACGCTCGTCATGCCC
ATCATCACGCGCGAAGTGCCGGAGATCTCCGCCTTCCAACCAAACCAGTT
GCATGTGGCGCTGTACAAGAAGGAGGAGCAATCCAAAATTCACATGCACA
ATGACAACAAGATGGGGGAGCTGGGGCCGTACATAGTCGGCATGTGCCTC
CTTTCGGATTGCTACATGACTTTTGTCAGGCCGAAAGACGGTAAGAAACG
CGTTCTACATCTGCCGCGGCGTTGCGTCTACGTTATGACCGGCGAGAGTC
ACCACGAGTGGCGGCACGGGATCCTGAAGGGTCAAACATCAGGTGACAGG
GTGAGCTTCACGCTGCGAGAAGTGCGCAAGCTTGCCGTTGAGGATGGGGC
GCGAGTCAAGAAAAGCAGTCACATGCCGAGTGCGAAGAGCATTCGCGATC
AGGCTATGAGGGATGAAAGGGCCCATCGAAGAGAGATGGACCGGCCAAAC
ATCAATCTCGCTGACTCTCTCGGTACCTGA
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protein sequence of Gvermi8852.t1

>Gvermi8852.t1 ID=Gvermi8852.t1|Name=Gvermi8852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=260bp
MAADRFCLPSLFPSAKSRPSSVPGFILREDAFTSEEEAALIHAVDTSSAQ
WTRRRTRITKNYGPYYFYQERDTAEGRFRYTDGKIMHTPLPDFLHTLVMP
IITREVPEISAFQPNQLHVALYKKEEQSKIHMHNDNKMGELGPYIVGMCL
LSDCYMTFVRPKDGKKRVLHLPRRCVYVMTGESHHEWRHGILKGQTSGDR
VSFTLREVRKLAVEDGARVKKSSHMPSAKSIRDQAMRDERAHRREMDRPN
INLADSLGT*
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mRNA from alignment at ScGOVlb_2241:272057..272836+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8852.t1 ID=Gvermi8852.t1|Name=Gvermi8852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=780bp|location=Sequence derived from alignment at ScGOVlb_2241:272057..272836+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCGATCGCTTTTGTTTGCCTTCCCTCTTTCCGTCGGCCAAGTC
CCGCCCGAGCTCCGTGCCGGGGTTCATTCTCCGAGAAGATGCATTCACCT
CTGAGGAGGAGGCAGCGCTCATTCACGCCGTGGATACGTCGTCTGCGCAA
TGGACCCGGCGTCGCACCAGAATCACCAAGAACTACGGGCCATACTATTT
TTACCAGGAGCGCGACACGGCCGAGGGGCGTTTTCGATACACCGACGGCA
AGATCATGCACACGCCGCTTCCCGACTTTCTCCACACGCTCGTCATGCCC
ATCATCACGCGCGAAGTGCCGGAGATCTCCGCCTTCCAACCAAACCAGTT
GCATGTGGCGCTGTACAAGAAGGAGGAGCAATCCAAAATTCACATGCACA
ATGACAACAAGATGGGGGAGCTGGGGCCGTACATAGTCGGCATGTGCCTC
CTTTCGGATTGCTACATGACTTTTGTCAGGCCGAAAGACGGTAAGAAACG
CGTTCTACATCTGCCGCGGCGTTGCGTCTACGTTATGACCGGCGAGAGTC
ACCACGAGTGGCGGCACGGGATCCTGAAGGGTCAAACATCAGGTGACAGG
GTGAGCTTCACGCTGCGAGAAGTGCGCAAGCTTGCCGTTGAGGATGGGGC
GCGAGTCAAGAAAAGCAGTCACATGCCGAGTGCGAAGAGCATTCGCGATC
AGGCTATGAGGGATGAAAGGGCCCATCGAAGAGAGATGGACCGGCCAAAC
ATCAATCTCGCTGACTCTCTCGGTACCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:272057..272836+

>Gvermi8852.t1 ID=Gvermi8852.t1|Name=Gvermi8852.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=780bp|location=Sequence derived from alignment at ScGOVlb_2241:272057..272836+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCGATCGCTTTTGTTTGCCTTCCCTCTTTCCGTCGGCCAAGTC
CCGCCCGAGCTCCGTGCCGGGGTTCATTCTCCGAGAAGATGCATTCACCT
CTGAGGAGGAGGCAGCGCTCATTCACGCCGTGGATACGTCGTCTGCGCAA
TGGACCCGGCGTCGCACCAGAATCACCAAGAACTACGGGCCATACTATTT
TTACCAGGAGCGCGACACGGCCGAGGGGCGTTTTCGATACACCGACGGCA
AGATCATGCACACGCCGCTTCCCGACTTTCTCCACACGCTCGTCATGCCC
ATCATCACGCGCGAAGTGCCGGAGATCTCCGCCTTCCAACCAAACCAGTT
GCATGTGGCGCTGTACAAGAAGGAGGAGCAATCCAAAATTCACATGCACA
ATGACAACAAGATGGGGGAGCTGGGGCCGTACATAGTCGGCATGTGCCTC
CTTTCGGATTGCTACATGACTTTTGTCAGGCCGAAAGACGGTAAGAAACG
CGTTCTACATCTGCCGCGGCGTTGCGTCTACGTTATGACCGGCGAGAGTC
ACCACGAGTGGCGGCACGGGATCCTGAAGGGTCAAACATCAGGTGACAGG
GTGAGCTTCACGCTGCGAGAAGTGCGCAAGCTTGCCGTTGAGGATGGGGC
GCGAGTCAAGAAAAGCAGTCACATGCCGAGTGCGAAGAGCATTCGCGATC
AGGCTATGAGGGATGAAAGGGCCCATCGAAGAGAGATGGACCGGCCAAAC
ATCAATCTCGCTGACTCTCTCGGTACCTGA
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