Gvermi8850.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8850.t1
Unique NameGvermi8850.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:265819..267108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002958724.1
PFAMsFKBP_C,PMSR
Max annot lvl3041|Chlorophyta
KEGG koko:K07304
Evalue2.82e-91
EggNOG OGsCOG0225@1|root,COG0545@1|root,KOG0544@2759|Eukaryota,KOG1635@2759|Eukaryota,37JIQ@33090|Viridiplantae,34ID2@3041|Chlorophyta
EC1.8.4.11
DescriptionPeptide methionine sulfoxide reductase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8850Gvermi8850Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 265819..267108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1Gvermi8850.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 265819..267108 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1.start1Gvermi8850.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 265819..265821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1.CDS1Gvermi8850.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 265819..265962 +
Gvermi8850.t1.CDS2Gvermi8850.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 266046..266382 +
Gvermi8850.t1.CDS3Gvermi8850.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 266479..266711 +
Gvermi8850.t1.CDS4Gvermi8850.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 266789..266955 +
Gvermi8850.t1.CDS5Gvermi8850.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 267042..267108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1.exon1Gvermi8850.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 265819..265962 +
Gvermi8850.t1.exon2Gvermi8850.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 266046..266382 +
Gvermi8850.t1.exon3Gvermi8850.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 266479..266711 +
Gvermi8850.t1.exon4Gvermi8850.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 266789..266955 +
Gvermi8850.t1.exon5Gvermi8850.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 267042..267108 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1.intron1Gvermi8850.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 265963..266045 +
Gvermi8850.t1.intron2Gvermi8850.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 266383..266478 +
Gvermi8850.t1.intron3Gvermi8850.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 266712..266788 +
Gvermi8850.t1.intron4Gvermi8850.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 266956..267041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8850.t1.stop1Gvermi8850.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 267106..267108 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8850.t1 ID=Gvermi8850.t1|Name=Gvermi8850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MRIASDGDSVNVHYTGFLDDGTQFDSSRGGAPLNFVIGAGTVIRGFDDAV
RGLRVGESRRSRIETEMAYGQRSDELIISIAAASVPKEMSLKVGDRVPLS
NGLKATVLETNEKEVRLDANHELAGKALTFDMELVGFHEPVLQAVQKGLK
RAIFGLGCFWGAELAFQRMKGVVSTKVGYTQGDTVNPSYEQVCSGTTGHV
EAVAVDYDESVVSYDELLQMFWERLGKSALTLNQVGNDVGSQYRSGIYCL
DDTQRKKAEESCKSASERLGQRVVVEVRDSEDVAFYVAESYHQRYLEKGG
QSAAKGATETIRCYG*
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spliced messenger RNA

>Gvermi8850.t1 ID=Gvermi8850.t1|Name=Gvermi8850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_2241:265819..267108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAATTGCCTCTGATGGTGACTCTGTTAATGTCCATTACACGGGTTT
CTTGGATGACGGAACTCAGTTTGATTCCTCCAGAGGCGGTGCACCACTCA
ACTTTGTCATCGGCGCTGGCACGGTGATTCGAGGGTTTGACGATGCTGTG
CGGGGTCTGCGCGTAGGGGAGTCTCGGCGATCTCGGATTGAAACTGAGAT
GGCGTACGGGCAACGGTCCGATGAGCTTATCATTAGTATTGCGGCTGCTA
GCGTGCCAAAAGAGATGAGTTTGAAGGTGGGAGATCGCGTGCCGCTGTCA
AATGGATTGAAGGCGACCGTGCTTGAGACAAATGAAAAAGAGGTGCGACT
CGACGCCAATCACGAACTTGCTGGAAAGGCTCTGACGTTTGATATGGAGC
TTGTTGGGTTCCACGAACCAGTGCTGCAAGCGGTTCAAAAGGGATTGAAA
CGAGCGATATTTGGACTGGGATGCTTCTGGGGGGCTGAACTGGCGTTTCA
GAGAATGAAAGGAGTTGTGAGCACCAAGGTGGGGTACACGCAAGGGGACA
CGGTGAATCCGAGCTACGAACAGGTGTGCTCCGGGACGACCGGGCACGTG
GAGGCAGTGGCGGTGGACTACGACGAATCCGTCGTGAGCTACGACGAACT
GCTGCAAATGTTCTGGGAGAGACTGGGCAAATCGGCGTTGACACTTAATC
AGGTGGGCAATGATGTTGGAAGCCAGTATCGGAGTGGAATTTACTGTCTG
GACGATACGCAGCGTAAGAAGGCGGAGGAATCATGCAAATCGGCCAGCGA
ACGGCTCGGGCAGCGCGTCGTAGTGGAGGTGAGGGACAGCGAAGATGTGG
CGTTCTACGTCGCTGAAAGCTACCACCAGAGGTACCTGGAAAAAGGCGGG
CAGAGCGCGGCGAAAGGCGCGACGGAGACGATTCGGTGCTACGGCTGA
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protein sequence of Gvermi8850.t1

>Gvermi8850.t1 ID=Gvermi8850.t1|Name=Gvermi8850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MRIASDGDSVNVHYTGFLDDGTQFDSSRGGAPLNFVIGAGTVIRGFDDAV
RGLRVGESRRSRIETEMAYGQRSDELIISIAAASVPKEMSLKVGDRVPLS
NGLKATVLETNEKEVRLDANHELAGKALTFDMELVGFHEPVLQAVQKGLK
RAIFGLGCFWGAELAFQRMKGVVSTKVGYTQGDTVNPSYEQVCSGTTGHV
EAVAVDYDESVVSYDELLQMFWERLGKSALTLNQVGNDVGSQYRSGIYCL
DDTQRKKAEESCKSASERLGQRVVVEVRDSEDVAFYVAESYHQRYLEKGG
QSAAKGATETIRCYG*
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mRNA from alignment at ScGOVlb_2241:265819..267108+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8850.t1 ID=Gvermi8850.t1|Name=Gvermi8850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_2241:265819..267108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAATTGCCTCTGATGGTGACTCTGTTAATGTCCATTACACGGGTTT
CTTGGATGACGGAACTCAGTTTGATTCCTCCAGAGGCGGTGCACCACTCA
ACTTTGTCATCGGCGCTGGCACGGTGATTCGAGGGTTTGACGATGTACGT
ATGCATATCTTGCAAGAGGGAAATGCGCAGAAAGAATTGGCAACATCTAA
CATGAGCACGGACATCAACGCGAGAAGGCTGTGCGGGGTCTGCGCGTAGG
GGAGTCTCGGCGATCTCGGATTGAAACTGAGATGGCGTACGGGCAACGGT
CCGATGAGCTTATCATTAGTATTGCGGCTGCTAGCGTGCCAAAAGAGATG
AGTTTGAAGGTGGGAGATCGCGTGCCGCTGTCAAATGGATTGAAGGCGAC
CGTGCTTGAGACAAATGAAAAAGAGGTGCGACTCGACGCCAATCACGAAC
TTGCTGGAAAGGCTCTGACGTTTGATATGGAGCTTGTTGGGTTCCACGAA
CCAGTGCTGCAAGCGGTTCAAAAGGGATTGAAACGAGCGATATTTGGACT
GGGATGCTTCTGGGGTATGTACAGCGCTGTTGCATGTTGACGATGCAGCG
GGATTTTCGATGATATGCGTCATGCGTTTTCTAACCAGATGTTGTGTTGG
GCGACTTTAGGGGCTGAACTGGCGTTTCAGAGAATGAAAGGAGTTGTGAG
CACCAAGGTGGGGTACACGCAAGGGGACACGGTGAATCCGAGCTACGAAC
AGGTGTGCTCCGGGACGACCGGGCACGTGGAGGCAGTGGCGGTGGACTAC
GACGAATCCGTCGTGAGCTACGACGAACTGCTGCAAATGTTCTGGGAGAG
ACTGGGCAAATCGGCGTTGACACTTAATCAGGTGGGCAATGATGTACGTT
TTGGTGAGGGTTGAAGCACTGGACGGCGCTTTTCGATTTGGCTAACGTGG
AGCATGTGCTGTTTGTGTAGGTTGGAAGCCAGTATCGGAGTGGAATTTAC
TGTCTGGACGATACGCAGCGTAAGAAGGCGGAGGAATCATGCAAATCGGC
CAGCGAACGGCTCGGGCAGCGCGTCGTAGTGGAGGTGAGGGACAGCGAAG
ATGTGGCGTTCTACGTCGCTGAAAGCTACCACCAGAGGTACGTCGCGGAG
CGCACTCGCGCGCGCGAGCAGGCGGCGACTGACTCGAGTTTATGTGCGGT
TGCGGCGGGCGCACATGTGACAGGTACCTGGAAAAAGGCGGGCAGAGCGC
GGCGAAAGGCGCGACGGAGACGATTCGGTGCTACGGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2241:265819..267108+

>Gvermi8850.t1 ID=Gvermi8850.t1|Name=Gvermi8850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_2241:265819..267108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGAATTGCCTCTGATGGTGACTCTGTTAATGTCCATTACACGGGTTT
CTTGGATGACGGAACTCAGTTTGATTCCTCCAGAGGCGGTGCACCACTCA
ACTTTGTCATCGGCGCTGGCACGGTGATTCGAGGGTTTGACGATGCTGTG
CGGGGTCTGCGCGTAGGGGAGTCTCGGCGATCTCGGATTGAAACTGAGAT
GGCGTACGGGCAACGGTCCGATGAGCTTATCATTAGTATTGCGGCTGCTA
GCGTGCCAAAAGAGATGAGTTTGAAGGTGGGAGATCGCGTGCCGCTGTCA
AATGGATTGAAGGCGACCGTGCTTGAGACAAATGAAAAAGAGGTGCGACT
CGACGCCAATCACGAACTTGCTGGAAAGGCTCTGACGTTTGATATGGAGC
TTGTTGGGTTCCACGAACCAGTGCTGCAAGCGGTTCAAAAGGGATTGAAA
CGAGCGATATTTGGACTGGGATGCTTCTGGGGGGCTGAACTGGCGTTTCA
GAGAATGAAAGGAGTTGTGAGCACCAAGGTGGGGTACACGCAAGGGGACA
CGGTGAATCCGAGCTACGAACAGGTGTGCTCCGGGACGACCGGGCACGTG
GAGGCAGTGGCGGTGGACTACGACGAATCCGTCGTGAGCTACGACGAACT
GCTGCAAATGTTCTGGGAGAGACTGGGCAAATCGGCGTTGACACTTAATC
AGGTGGGCAATGATGTTGGAAGCCAGTATCGGAGTGGAATTTACTGTCTG
GACGATACGCAGCGTAAGAAGGCGGAGGAATCATGCAAATCGGCCAGCGA
ACGGCTCGGGCAGCGCGTCGTAGTGGAGGTGAGGGACAGCGAAGATGTGG
CGTTCTACGTCGCTGAAAGCTACCACCAGAGGTACCTGGAAAAAGGCGGG
CAGAGCGCGGCGAAAGGCGCGACGGAGACGATTCGGTGCTACGGCTGA
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