Gvermi8853.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8853.t1
Unique Name	Gvermi8853.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2241	contig	ScGOVlb_2241:273504..274859 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP01886
PFAMs	ArfGap
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K12492
KEGG Pathway	ko04144,map04144
Evalue	2.03e-38
EggNOG OGs	COG5347@1\|root,KOG0704@2759\|Eukaryota,37KZJ@33090\|Viridiplantae,34JHF@3041\|Chlorophyta
Description	Putative GTP-ase activating proteins for the small GTPase, ARF
COG category	TUZ
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8853	Gvermi8853	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2241 273504..274859 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8853.t1.start1	Gvermi8853.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2241 273504..273506 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8853.t1.CDS1	Gvermi8853.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2241 273504..274859 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8853.t1.exon1	Gvermi8853.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2241 273504..274859 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8853.t1.stop1	Gvermi8853.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2241 274857..274859 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8853.t1	Gvermi8853.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2241 273504..274859 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2241:273504..274859+
coding sequence from alignment at ScGOVlb_2241:273504..274859+

mRNA sequence

>Gvermi8853.t1 ID=Gvermi8853.t1|Name=Gvermi8853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=452bp
MDPTKKILRELQMRPENKVCADCGTKNPQWATVSYGTFICLDCSGQHRGL
GVHISFVRSVGMDKWKEWEVKRMQCGGNAKFVKYCKENGMHGAEISSKYN
SEAAAVYAAKLKSEATGEPYQVPPPANRPKPKMAAPGSLGSTGMGGVTTL
SSSGGRRTSGLGMGSVGGNGNMNSMASGMGSSMGSSMGSAMGSSVGSGMG
SMGNGAMGTGMSHSTGGAYGSGAPRMGGISSDMWHQSNGNPAAMSSTSSA
SYGGNAKNSGFGGFSGFGSLGSNAPATLNNVGQNLTRNLSSIASTVQKSD
VMGHASKAAAQAGGMLSSWFTNVSTQANKIMNENDGRQDLRAGLRRNLAE
APGANSAGFKGFSSDDFARSSYGTNNSNSSETVPTNRTNGVSYAQMSSSY
QANQAGTTQSSNAPSTAVAAGSGNAGENAWGGFDDVPSTPKETSDPWGAW
N*

spliced messenger RNA

>Gvermi8853.t1 ID=Gvermi8853.t1|Name=Gvermi8853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at ScGOVlb_2241:273504..274859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCGACGAAGAAGATATTGCGGGAACTACAGATGCGTCCCGAAAA
CAAAGTGTGCGCGGATTGTGGAACCAAAAACCCGCAGTGGGCTACGGTTT
CATACGGCACTTTCATCTGCCTCGATTGCTCCGGCCAGCACCGGGGGCTT
GGCGTTCACATTTCGTTCGTTCGCTCGGTGGGCATGGATAAATGGAAGGA
GTGGGAGGTGAAGCGTATGCAATGCGGCGGGAATGCCAAGTTTGTCAAGT
ACTGCAAGGAGAACGGCATGCACGGCGCGGAGATTAGCAGCAAGTACAAT
TCTGAGGCGGCGGCGGTATACGCGGCCAAGCTGAAAAGTGAGGCCACTGG
AGAGCCGTATCAAGTCCCACCCCCTGCAAATCGCCCGAAACCAAAAATGG
CCGCTCCGGGATCCTTGGGCTCCACTGGCATGGGTGGAGTCACCACTCTT
AGCTCATCTGGAGGGCGCAGAACAAGCGGCTTGGGAATGGGTTCAGTTGG
TGGAAACGGAAACATGAACAGCATGGCAAGTGGCATGGGGTCGAGTATGG
GGTCTAGCATGGGATCGGCCATGGGTTCCAGCGTAGGCTCTGGCATGGGC
AGCATGGGTAACGGGGCCATGGGCACCGGCATGAGTCACAGTACGGGAGG
TGCTTATGGGTCTGGTGCACCGCGAATGGGGGGGATCTCTTCCGACATGT
GGCATCAGAGCAATGGAAACCCAGCGGCAATGTCGAGCACATCGTCAGCG
AGCTACGGCGGAAATGCAAAGAACTCCGGGTTCGGGGGCTTCAGCGGCTT
TGGCTCTCTGGGGTCCAACGCGCCTGCCACGCTGAACAACGTGGGACAGA
ACCTCACCCGCAATCTATCAAGCATTGCCTCGACTGTGCAAAAGTCTGAT
GTAATGGGTCACGCAAGCAAAGCAGCAGCGCAAGCCGGGGGCATGCTATC
GTCTTGGTTCACAAATGTATCCACGCAGGCAAACAAGATAATGAACGAAA
ACGACGGACGCCAAGACCTTCGAGCAGGGCTTCGCAGAAATCTGGCCGAG
GCACCAGGGGCAAACAGTGCTGGATTCAAAGGCTTTTCATCGGACGATTT
TGCAAGGAGTTCATACGGAACTAACAACAGCAACTCTAGCGAAACAGTGC
CGACAAATCGTACGAATGGTGTATCGTATGCACAAATGAGCTCATCTTAC
CAAGCGAATCAGGCTGGAACGACGCAAAGCAGTAATGCGCCCAGCACTGC
TGTAGCTGCGGGAAGTGGAAATGCAGGCGAAAACGCGTGGGGTGGGTTTG
ACGATGTGCCATCCACACCAAAAGAAACGAGCGATCCATGGGGTGCCTGG
AATTGA

protein sequence of Gvermi8853.t1

>Gvermi8853.t1 ID=Gvermi8853.t1|Name=Gvermi8853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=452bp
MDPTKKILRELQMRPENKVCADCGTKNPQWATVSYGTFICLDCSGQHRGL
GVHISFVRSVGMDKWKEWEVKRMQCGGNAKFVKYCKENGMHGAEISSKYN
SEAAAVYAAKLKSEATGEPYQVPPPANRPKPKMAAPGSLGSTGMGGVTTL
SSSGGRRTSGLGMGSVGGNGNMNSMASGMGSSMGSSMGSAMGSSVGSGMG
SMGNGAMGTGMSHSTGGAYGSGAPRMGGISSDMWHQSNGNPAAMSSTSSA
SYGGNAKNSGFGGFSGFGSLGSNAPATLNNVGQNLTRNLSSIASTVQKSD
VMGHASKAAAQAGGMLSSWFTNVSTQANKIMNENDGRQDLRAGLRRNLAE
APGANSAGFKGFSSDDFARSSYGTNNSNSSETVPTNRTNGVSYAQMSSSY
QANQAGTTQSSNAPSTAVAAGSGNAGENAWGGFDDVPSTPKETSDPWGAW
N*

mRNA from alignment at ScGOVlb_2241:273504..274859+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8853.t1 ID=Gvermi8853.t1|Name=Gvermi8853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at ScGOVlb_2241:273504..274859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCCGACGAAGAAGATATTGCGGGAACTACAGATGCGTCCCGAAAA
CAAAGTGTGCGCGGATTGTGGAACCAAAAACCCGCAGTGGGCTACGGTTT
CATACGGCACTTTCATCTGCCTCGATTGCTCCGGCCAGCACCGGGGGCTT
GGCGTTCACATTTCGTTCGTTCGCTCGGTGGGCATGGATAAATGGAAGGA
GTGGGAGGTGAAGCGTATGCAATGCGGCGGGAATGCCAAGTTTGTCAAGT
ACTGCAAGGAGAACGGCATGCACGGCGCGGAGATTAGCAGCAAGTACAAT
TCTGAGGCGGCGGCGGTATACGCGGCCAAGCTGAAAAGTGAGGCCACTGG
AGAGCCGTATCAAGTCCCACCCCCTGCAAATCGCCCGAAACCAAAAATGG
CCGCTCCGGGATCCTTGGGCTCCACTGGCATGGGTGGAGTCACCACTCTT
AGCTCATCTGGAGGGCGCAGAACAAGCGGCTTGGGAATGGGTTCAGTTGG
TGGAAACGGAAACATGAACAGCATGGCAAGTGGCATGGGGTCGAGTATGG
GGTCTAGCATGGGATCGGCCATGGGTTCCAGCGTAGGCTCTGGCATGGGC
AGCATGGGTAACGGGGCCATGGGCACCGGCATGAGTCACAGTACGGGAGG
TGCTTATGGGTCTGGTGCACCGCGAATGGGGGGGATCTCTTCCGACATGT
GGCATCAGAGCAATGGAAACCCAGCGGCAATGTCGAGCACATCGTCAGCG
AGCTACGGCGGAAATGCAAAGAACTCCGGGTTCGGGGGCTTCAGCGGCTT
TGGCTCTCTGGGGTCCAACGCGCCTGCCACGCTGAACAACGTGGGACAGA
ACCTCACCCGCAATCTATCAAGCATTGCCTCGACTGTGCAAAAGTCTGAT
GTAATGGGTCACGCAAGCAAAGCAGCAGCGCAAGCCGGGGGCATGCTATC
GTCTTGGTTCACAAATGTATCCACGCAGGCAAACAAGATAATGAACGAAA
ACGACGGACGCCAAGACCTTCGAGCAGGGCTTCGCAGAAATCTGGCCGAG
GCACCAGGGGCAAACAGTGCTGGATTCAAAGGCTTTTCATCGGACGATTT
TGCAAGGAGTTCATACGGAACTAACAACAGCAACTCTAGCGAAACAGTGC
CGACAAATCGTACGAATGGTGTATCGTATGCACAAATGAGCTCATCTTAC
CAAGCGAATCAGGCTGGAACGACGCAAAGCAGTAATGCGCCCAGCACTGC
TGTAGCTGCGGGAAGTGGAAATGCAGGCGAAAACGCGTGGGGTGGGTTTG
ACGATGTGCCATCCACACCAAAAGAAACGAGCGATCCATGGGGTGCCTGG
AATTGA

Coding sequence (CDS) from alignment at ScGOVlb_2241:273504..274859+

>Gvermi8853.t1 ID=Gvermi8853.t1|Name=Gvermi8853.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1356bp|location=Sequence derived from alignment at ScGOVlb_2241:273504..274859+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACCCGACGAAGAAGATATTGCGGGAACTACAGATGCGTCCCGAAAA
CAAAGTGTGCGCGGATTGTGGAACCAAAAACCCGCAGTGGGCTACGGTTT
CATACGGCACTTTCATCTGCCTCGATTGCTCCGGCCAGCACCGGGGGCTT
GGCGTTCACATTTCGTTCGTTCGCTCGGTGGGCATGGATAAATGGAAGGA
GTGGGAGGTGAAGCGTATGCAATGCGGCGGGAATGCCAAGTTTGTCAAGT
ACTGCAAGGAGAACGGCATGCACGGCGCGGAGATTAGCAGCAAGTACAAT
TCTGAGGCGGCGGCGGTATACGCGGCCAAGCTGAAAAGTGAGGCCACTGG
AGAGCCGTATCAAGTCCCACCCCCTGCAAATCGCCCGAAACCAAAAATGG
CCGCTCCGGGATCCTTGGGCTCCACTGGCATGGGTGGAGTCACCACTCTT
AGCTCATCTGGAGGGCGCAGAACAAGCGGCTTGGGAATGGGTTCAGTTGG
TGGAAACGGAAACATGAACAGCATGGCAAGTGGCATGGGGTCGAGTATGG
GGTCTAGCATGGGATCGGCCATGGGTTCCAGCGTAGGCTCTGGCATGGGC
AGCATGGGTAACGGGGCCATGGGCACCGGCATGAGTCACAGTACGGGAGG
TGCTTATGGGTCTGGTGCACCGCGAATGGGGGGGATCTCTTCCGACATGT
GGCATCAGAGCAATGGAAACCCAGCGGCAATGTCGAGCACATCGTCAGCG
AGCTACGGCGGAAATGCAAAGAACTCCGGGTTCGGGGGCTTCAGCGGCTT
TGGCTCTCTGGGGTCCAACGCGCCTGCCACGCTGAACAACGTGGGACAGA
ACCTCACCCGCAATCTATCAAGCATTGCCTCGACTGTGCAAAAGTCTGAT
GTAATGGGTCACGCAAGCAAAGCAGCAGCGCAAGCCGGGGGCATGCTATC
GTCTTGGTTCACAAATGTATCCACGCAGGCAAACAAGATAATGAACGAAA
ACGACGGACGCCAAGACCTTCGAGCAGGGCTTCGCAGAAATCTGGCCGAG
GCACCAGGGGCAAACAGTGCTGGATTCAAAGGCTTTTCATCGGACGATTT
TGCAAGGAGTTCATACGGAACTAACAACAGCAACTCTAGCGAAACAGTGC
CGACAAATCGTACGAATGGTGTATCGTATGCACAAATGAGCTCATCTTAC
CAAGCGAATCAGGCTGGAACGACGCAAAGCAGTAATGCGCCCAGCACTGC
TGTAGCTGCGGGAAGTGGAAATGCAGGCGAAAACGCGTGGGGTGGGTTTG
ACGATGTGCCATCCACACCAAAAGAAACGAGCGATCCATGGGGTGCCTGG
AATTGA