Gvermi2114.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2114.t1
Unique NameGvermi2114.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:209450..210245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2114Gvermi2114Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 209450..210245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1Gvermi2114.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 209450..210245 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1.stop1Gvermi2114.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 209450..209452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1.CDS1Gvermi2114.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 209450..209872 -
Gvermi2114.t1.CDS2Gvermi2114.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 210078..210245 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1.exon1Gvermi2114.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 209450..209872 -
Gvermi2114.t1.exon2Gvermi2114.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 210078..210245 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1.intron1Gvermi2114.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 209873..210077 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2114.t1.start1Gvermi2114.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 210243..210245 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2114.t1 ID=Gvermi2114.t1|Name=Gvermi2114.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=197bp
MDSASIARGFILAYRIADKVIQNKGDNNFLQKQDFHSRVRSDFYDTSDGV
KKKTRVYVPEKPPEEFLNRILVVKGPSLSYSQREHRPVIDAELKCQASKD
VDETIQSAIEDDKTRQSVYFFLVFPEGTVLDNSVKGSGMYLVRDVIPITI
DARKNPCNKELRQCTLSWTIVQEGGERGLGGVDDGDDKVDLQSMFR*
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spliced messenger RNA

>Gvermi2114.t1 ID=Gvermi2114.t1|Name=Gvermi2114.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=591bp|location=Sequence derived from alignment at ScGOVlb_191:209450..210245- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCGGCAAGCATCGCACGCGGCTTCATTTTGGCTTACCGCATCGC
GGACAAGGTGATTCAGAACAAGGGCGACAACAACTTCCTGCAGAAGCAAG
ACTTTCATTCTCGCGTCCGCAGCGACTTCTATGACACTTCAGATGGTGTT
AAGAAGAAGACTCGTGTATATGTCCCAGAGAAACCTCCCGAGGAGTTCTT
GAATCGCATTCTTGTTGTGAAAGGCCCATCGCTTTCCTACTCGCAACGCG
AACACCGTCCGGTCATCGATGCTGAGCTCAAGTGTCAAGCAAGCAAGGAT
GTCGACGAAACAATCCAGTCAGCCATTGAGGACGACAAGACCCGTCAAAG
TGTCTATTTCTTTCTTGTATTTCCAGAGGGAACCGTGCTGGACAATTCAG
TTAAAGGAAGTGGAATGTACTTGGTCCGTGATGTCATTCCCATCACTATT
GACGCCCGAAAAAATCCTTGCAACAAGGAGCTACGTCAGTGTACTCTCTC
CTGGACAATTGTTCAAGAAGGAGGCGAACGTGGTCTTGGCGGCGTTGACG
ATGGTGACGACAAAGTGGATCTTCAATCTATGTTTCGTTAG
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protein sequence of Gvermi2114.t1

>Gvermi2114.t1 ID=Gvermi2114.t1|Name=Gvermi2114.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=197bp
MDSASIARGFILAYRIADKVIQNKGDNNFLQKQDFHSRVRSDFYDTSDGV
KKKTRVYVPEKPPEEFLNRILVVKGPSLSYSQREHRPVIDAELKCQASKD
VDETIQSAIEDDKTRQSVYFFLVFPEGTVLDNSVKGSGMYLVRDVIPITI
DARKNPCNKELRQCTLSWTIVQEGGERGLGGVDDGDDKVDLQSMFR*
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mRNA from alignment at ScGOVlb_191:209450..210245-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2114.t1 ID=Gvermi2114.t1|Name=Gvermi2114.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=796bp|location=Sequence derived from alignment at ScGOVlb_191:209450..210245- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCGGCAAGCATCGCACGCGGCTTCATTTTGGCTTACCGCATCGC
GGACAAGGTGATTCAGAACAAGGGCGACAACAACTTCCTGCAGAAGCAAG
ACTTTCATTCTCGCGTCCGCAGCGACTTCTATGACACTTCAGATGGTGTT
AAGAAGAAGACTCGTGTAGTAGAGTAGTCGTAATTCTAGTACGTACGTAT
TTAAAAACTTTCAATGGACACGGTGTGTTTGGTTGTTGGATGGTTGTGGT
GTTCGATTCTCTTGTTTTGGAGGGAGTGTTCGGCCTCTGTAGAAAGTGTA
CTGAGTTCTACGTGCGCCCTTGAAAAAATCTAGCGGTTGACGGGGTGCAC
AAGAACTGCTCGGTCGGAGCCAGTATGTCCCAGAGAAACCTCCCGAGGAG
TTCTTGAATCGCATTCTTGTTGTGAAAGGCCCATCGCTTTCCTACTCGCA
ACGCGAACACCGTCCGGTCATCGATGCTGAGCTCAAGTGTCAAGCAAGCA
AGGATGTCGACGAAACAATCCAGTCAGCCATTGAGGACGACAAGACCCGT
CAAAGTGTCTATTTCTTTCTTGTATTTCCAGAGGGAACCGTGCTGGACAA
TTCAGTTAAAGGAAGTGGAATGTACTTGGTCCGTGATGTCATTCCCATCA
CTATTGACGCCCGAAAAAATCCTTGCAACAAGGAGCTACGTCAGTGTACT
CTCTCCTGGACAATTGTTCAAGAAGGAGGCGAACGTGGTCTTGGCGGCGT
TGACGATGGTGACGACAAAGTGGATCTTCAATCTATGTTTCGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_191:209450..210245-

>Gvermi2114.t1 ID=Gvermi2114.t1|Name=Gvermi2114.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=591bp|location=Sequence derived from alignment at ScGOVlb_191:209450..210245- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCGGCAAGCATCGCACGCGGCTTCATTTTGGCTTACCGCATCGC
GGACAAGGTGATTCAGAACAAGGGCGACAACAACTTCCTGCAGAAGCAAG
ACTTTCATTCTCGCGTCCGCAGCGACTTCTATGACACTTCAGATGGTGTT
AAGAAGAAGACTCGTGTATATGTCCCAGAGAAACCTCCCGAGGAGTTCTT
GAATCGCATTCTTGTTGTGAAAGGCCCATCGCTTTCCTACTCGCAACGCG
AACACCGTCCGGTCATCGATGCTGAGCTCAAGTGTCAAGCAAGCAAGGAT
GTCGACGAAACAATCCAGTCAGCCATTGAGGACGACAAGACCCGTCAAAG
TGTCTATTTCTTTCTTGTATTTCCAGAGGGAACCGTGCTGGACAATTCAG
TTAAAGGAAGTGGAATGTACTTGGTCCGTGATGTCATTCCCATCACTATT
GACGCCCGAAAAAATCCTTGCAACAAGGAGCTACGTCAGTGTACTCTCTC
CTGGACAATTGTTCAAGAAGGAGGCGAACGTGGTCTTGGCGGCGTTGACG
ATGGTGACGACAAAGTGGATCTTCAATCTATGTTTCGTTAG
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