Gvermi4438.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4438.t1
Unique NameGvermi4438.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length553
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1926824..1928482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4438Gvermi4438Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1926824..1928482 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4438.t1.stop1Gvermi4438.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1926824..1926826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4438.t1.CDS1Gvermi4438.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1926824..1928482 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4438.t1.exon1Gvermi4438.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1926824..1928482 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4438.t1.start1Gvermi4438.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1928480..1928482 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4438.t1Gvermi4438.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1926824..1928482 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=553bp
MQCAQVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPI
ADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPPSSEVVLQSGIPAL
ADSETPGLTVTSRPPTLPKPIRGLSDLPSDTHSPYQPDTLGLPSTPSSTP
RGTALISLAPSREGEETTPSTVAPVPPPSQRDNHRETRGRRTATPNVRQE
RVSTEVGIYPTPSREERPNNLEQQAWLVVPPTSAGDEPRSLPNVTYRVAT
KPHTANRGNSPQRVGQVTDGARVVASETANPSKGTVNRGTKWHPVLDSIG
PNQGKTQEIPENRCVNANEPPSSRVKSPQVSRINRPEPRGQPLPPSRRGE
VRHLEVRDEYRRVHGRHPYRDVSEFAAAVRPKPRASPGSGNARPPAHPYG
MLTNPIREVTPMHVEQPTQPAQGMSTRNRETPPKQRYEYDVRSARKAEWV
HTAQSAASRAISNPSQGDSRFGAVTTTPEGRNDYSQGYVVKRIVGHSWDQ
DGILQYRVRWYGYATEWDTLEPIEHLPRSKLVQYHSHAGTALLSTMHKAQ
VG*
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spliced messenger RNA

>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at ScGOVlb_147:1926824..1928482- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATGCGCACAAGTCGCGTACAAAAGGGATTTCGATGCCCGCCTACG
TCGGGAAAACTCACGCCCCATCTCGAAAGGAGACCATGTGTTTGTTCGCA
GGGAGCACTACAACCATACAAAGGAGAAACGACACAAACTATCGCCCATC
GCCGACGGCCCCTTCCGGGTCATCTCCGAATCAACGGGCACAGTTGTCGC
CGAGATCGATGGCGCGCACGAACGCTTGTCGCGCGACCGCGTCGTTCTCG
CACCGCCTCCCTCATCTGAGGTCGTACTACAGTCAGGTATTCCCGCTTTG
GCGGATTCAGAAACGCCAGGTCTAACCGTGACATCTCGGCCCCCGACGTT
ACCCAAACCCATTCGAGGACTCTCCGATCTTCCGTCCGATACGCACTCAC
CTTATCAACCGGATACGCTGGGCCTACCCAGCACCCCTTCAAGCACCCCC
CGAGGTACGGCTCTAATATCCCTTGCTCCGTCTAGAGAGGGGGAGGAGAC
TACTCCCTCAACTGTGGCTCCTGTACCACCGCCGTCGCAACGGGATAACC
ACCGTGAGACACGGGGAAGGCGCACCGCAACACCAAATGTCCGGCAGGAA
CGCGTAAGTACAGAAGTGGGCATTTACCCCACACCTTCGCGTGAGGAAAG
ACCCAACAACTTGGAGCAACAAGCGTGGCTGGTCGTTCCGCCGACCTCAG
CGGGGGATGAACCGCGATCATTGCCTAACGTCACGTACCGCGTGGCAACG
AAGCCGCACACCGCGAACCGCGGGAACTCCCCACAAAGGGTCGGACAAGT
CACGGATGGTGCTCGGGTCGTCGCGTCAGAAACGGCAAACCCTTCAAAGG
GAACGGTTAACAGGGGCACGAAATGGCACCCAGTACTCGACAGCATTGGG
CCCAACCAGGGGAAGACGCAGGAGATCCCGGAAAATCGCTGCGTAAACGC
CAACGAGCCTCCCTCGTCAAGGGTCAAATCGCCCCAAGTGTCTCGGATAA
ACAGGCCAGAGCCACGCGGACAACCCCTGCCACCATCAAGACGAGGGGAA
GTTCGTCACCTCGAAGTGAGGGATGAGTACCGCAGAGTGCACGGTCGACA
CCCGTATCGGGATGTCTCGGAATTCGCCGCAGCTGTTAGGCCCAAGCCAA
GAGCGTCACCCGGGAGCGGGAACGCGCGGCCGCCGGCACATCCGTACGGC
ATGCTTACGAATCCAATCCGGGAAGTGACACCCATGCATGTGGAACAACC
GACACAACCCGCACAGGGGATGTCAACCCGCAACCGGGAAACGCCGCCAA
AGCAGCGCTATGAATACGACGTACGCTCTGCAAGGAAAGCCGAGTGGGTT
CACACGGCTCAGAGCGCCGCGTCCCGTGCAATCTCAAACCCTTCACAGGG
AGATTCCCGTTTTGGGGCGGTAACAACAACCCCGGAAGGCCGGAACGACT
ACTCACAGGGGTACGTAGTGAAGCGCATCGTCGGCCACTCCTGGGATCAG
GACGGTATACTGCAGTACCGCGTACGTTGGTACGGCTACGCCACAGAATG
GGATACTCTCGAACCAATCGAGCACCTTCCCAGATCAAAACTGGTACAGT
ACCACAGCCATGCGGGAACGGCGCTACTGTCTACGATGCACAAAGCCCAA
GTTGGGTAG
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protein sequence of Gvermi4438.t1

>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=553bp
MQCAQVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPI
ADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPPSSEVVLQSGIPAL
ADSETPGLTVTSRPPTLPKPIRGLSDLPSDTHSPYQPDTLGLPSTPSSTP
RGTALISLAPSREGEETTPSTVAPVPPPSQRDNHRETRGRRTATPNVRQE
RVSTEVGIYPTPSREERPNNLEQQAWLVVPPTSAGDEPRSLPNVTYRVAT
KPHTANRGNSPQRVGQVTDGARVVASETANPSKGTVNRGTKWHPVLDSIG
PNQGKTQEIPENRCVNANEPPSSRVKSPQVSRINRPEPRGQPLPPSRRGE
VRHLEVRDEYRRVHGRHPYRDVSEFAAAVRPKPRASPGSGNARPPAHPYG
MLTNPIREVTPMHVEQPTQPAQGMSTRNRETPPKQRYEYDVRSARKAEWV
HTAQSAASRAISNPSQGDSRFGAVTTTPEGRNDYSQGYVVKRIVGHSWDQ
DGILQYRVRWYGYATEWDTLEPIEHLPRSKLVQYHSHAGTALLSTMHKAQ
VG*
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mRNA from alignment at ScGOVlb_147:1926824..1928482-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1659bp|location=Sequence derived from alignment at ScGOVlb_147:1926824..1928482- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATGCGCACAAGTCGCGTACAAAAGGGATTTCGATGCCCGCCTACG
TCGGGAAAACTCACGCCCCATCTCGAAAGGAGACCATGTGTTTGTTCGCA
GGGAGCACTACAACCATACAAAGGAGAAACGACACAAACTATCGCCCATC
GCCGACGGCCCCTTCCGGGTCATCTCCGAATCAACGGGCACAGTTGTCGC
CGAGATCGATGGCGCGCACGAACGCTTGTCGCGCGACCGCGTCGTTCTCG
CACCGCCTCCCTCATCTGAGGTCGTACTACAGTCAGGTATTCCCGCTTTG
GCGGATTCAGAAACGCCAGGTCTAACCGTGACATCTCGGCCCCCGACGTT
ACCCAAACCCATTCGAGGACTCTCCGATCTTCCGTCCGATACGCACTCAC
CTTATCAACCGGATACGCTGGGCCTACCCAGCACCCCTTCAAGCACCCCC
CGAGGTACGGCTCTAATATCCCTTGCTCCGTCTAGAGAGGGGGAGGAGAC
TACTCCCTCAACTGTGGCTCCTGTACCACCGCCGTCGCAACGGGATAACC
ACCGTGAGACACGGGGAAGGCGCACCGCAACACCAAATGTCCGGCAGGAA
CGCGTAAGTACAGAAGTGGGCATTTACCCCACACCTTCGCGTGAGGAAAG
ACCCAACAACTTGGAGCAACAAGCGTGGCTGGTCGTTCCGCCGACCTCAG
CGGGGGATGAACCGCGATCATTGCCTAACGTCACGTACCGCGTGGCAACG
AAGCCGCACACCGCGAACCGCGGGAACTCCCCACAAAGGGTCGGACAAGT
CACGGATGGTGCTCGGGTCGTCGCGTCAGAAACGGCAAACCCTTCAAAGG
GAACGGTTAACAGGGGCACGAAATGGCACCCAGTACTCGACAGCATTGGG
CCCAACCAGGGGAAGACGCAGGAGATCCCGGAAAATCGCTGCGTAAACGC
CAACGAGCCTCCCTCGTCAAGGGTCAAATCGCCCCAAGTGTCTCGGATAA
ACAGGCCAGAGCCACGCGGACAACCCCTGCCACCATCAAGACGAGGGGAA
GTTCGTCACCTCGAAGTGAGGGATGAGTACCGCAGAGTGCACGGTCGACA
CCCGTATCGGGATGTCTCGGAATTCGCCGCAGCTGTTAGGCCCAAGCCAA
GAGCGTCACCCGGGAGCGGGAACGCGCGGCCGCCGGCACATCCGTACGGC
ATGCTTACGAATCCAATCCGGGAAGTGACACCCATGCATGTGGAACAACC
GACACAACCCGCACAGGGGATGTCAACCCGCAACCGGGAAACGCCGCCAA
AGCAGCGCTATGAATACGACGTACGCTCTGCAAGGAAAGCCGAGTGGGTT
CACACGGCTCAGAGCGCCGCGTCCCGTGCAATCTCAAACCCTTCACAGGG
AGATTCCCGTTTTGGGGCGGTAACAACAACCCCGGAAGGCCGGAACGACT
ACTCACAGGGGTACGTAGTGAAGCGCATCGTCGGCCACTCCTGGGATCAG
GACGGTATACTGCAGTACCGCGTACGTTGGTACGGCTACGCCACAGAATG
GGATACTCTCGAACCAATCGAGCACCTTCCCAGATCAAAACTGGTACAGT
ACCACAGCCATGCGGGAACGGCGCTACTGTCTACGATGCACAAAGCCCAA
GTTGGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_147:1926824..1928482-

>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1659bp|location=Sequence derived from alignment at ScGOVlb_147:1926824..1928482- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAATGCGCACAAGTCGCGTACAAAAGGGATTTCGATGCCCGCCTACG
TCGGGAAAACTCACGCCCCATCTCGAAAGGAGACCATGTGTTTGTTCGCA
GGGAGCACTACAACCATACAAAGGAGAAACGACACAAACTATCGCCCATC
GCCGACGGCCCCTTCCGGGTCATCTCCGAATCAACGGGCACAGTTGTCGC
CGAGATCGATGGCGCGCACGAACGCTTGTCGCGCGACCGCGTCGTTCTCG
CACCGCCTCCCTCATCTGAGGTCGTACTACAGTCAGGTATTCCCGCTTTG
GCGGATTCAGAAACGCCAGGTCTAACCGTGACATCTCGGCCCCCGACGTT
ACCCAAACCCATTCGAGGACTCTCCGATCTTCCGTCCGATACGCACTCAC
CTTATCAACCGGATACGCTGGGCCTACCCAGCACCCCTTCAAGCACCCCC
CGAGGTACGGCTCTAATATCCCTTGCTCCGTCTAGAGAGGGGGAGGAGAC
TACTCCCTCAACTGTGGCTCCTGTACCACCGCCGTCGCAACGGGATAACC
ACCGTGAGACACGGGGAAGGCGCACCGCAACACCAAATGTCCGGCAGGAA
CGCGTAAGTACAGAAGTGGGCATTTACCCCACACCTTCGCGTGAGGAAAG
ACCCAACAACTTGGAGCAACAAGCGTGGCTGGTCGTTCCGCCGACCTCAG
CGGGGGATGAACCGCGATCATTGCCTAACGTCACGTACCGCGTGGCAACG
AAGCCGCACACCGCGAACCGCGGGAACTCCCCACAAAGGGTCGGACAAGT
CACGGATGGTGCTCGGGTCGTCGCGTCAGAAACGGCAAACCCTTCAAAGG
GAACGGTTAACAGGGGCACGAAATGGCACCCAGTACTCGACAGCATTGGG
CCCAACCAGGGGAAGACGCAGGAGATCCCGGAAAATCGCTGCGTAAACGC
CAACGAGCCTCCCTCGTCAAGGGTCAAATCGCCCCAAGTGTCTCGGATAA
ACAGGCCAGAGCCACGCGGACAACCCCTGCCACCATCAAGACGAGGGGAA
GTTCGTCACCTCGAAGTGAGGGATGAGTACCGCAGAGTGCACGGTCGACA
CCCGTATCGGGATGTCTCGGAATTCGCCGCAGCTGTTAGGCCCAAGCCAA
GAGCGTCACCCGGGAGCGGGAACGCGCGGCCGCCGGCACATCCGTACGGC
ATGCTTACGAATCCAATCCGGGAAGTGACACCCATGCATGTGGAACAACC
GACACAACCCGCACAGGGGATGTCAACCCGCAACCGGGAAACGCCGCCAA
AGCAGCGCTATGAATACGACGTACGCTCTGCAAGGAAAGCCGAGTGGGTT
CACACGGCTCAGAGCGCCGCGTCCCGTGCAATCTCAAACCCTTCACAGGG
AGATTCCCGTTTTGGGGCGGTAACAACAACCCCGGAAGGCCGGAACGACT
ACTCACAGGGGTACGTAGTGAAGCGCATCGTCGGCCACTCCTGGGATCAG
GACGGTATACTGCAGTACCGCGTACGTTGGTACGGCTACGCCACAGAATG
GGATACTCTCGAACCAATCGAGCACCTTCCCAGATCAAAACTGGTACAGT
ACCACAGCCATGCGGGAACGGCGCTACTGTCTACGATGCACAAAGCCCAA
GTTGGGTAG
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