Gvermi4438.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi4438.t1
Unique Name	Gvermi4438.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	553

Homology

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BLAST of Gvermi4438.t1 vs. uniprot
Match: R7QFB9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFB9_CHOCR)

HSP 1 Score: 68.9 bits (167), Expect = 1.570e-8
Identity = 40/83 (48.19%), Postives = 52/83 (62.65%), Query Frame = 0

Query:    5 QVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPIADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPP 87
            Q  YKR+FDARLR+     I  G +VF+R+E    T E +HKL+ +A GP++V   +  TVV  I    ER+SRDRV LAP P
Sbjct:  624 QARYKRNFDARLRKSKY-DIPSGSYVFLRKEQGTAT-EPKHKLAQVATGPYQVKESTENTVVIAIGDQEERVSRDRVELAPSP 704

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BLAST of Gvermi4438.t1 vs. uniprot
Match: R7Q5S0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5S0_CHOCR)

HSP 1 Score: 64.7 bits (156), Expect = 3.230e-7
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0

Query:    5 QVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPIADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPPSSEVVLQSGIPA-LADSETPG 107
            Q  YKRDFD R+RR NSR +  G++V++       T  K   L+  A GP+RV++    T+  + DG  ER+S DR V APPP+  +   +  PA LAD    G
Sbjct:  617 QARYKRDFDKRIRRINSR-LHPGEYVYLNPTDGGKTSNK---LASPAVGPYRVLANDHRTITIDRDGVTERVSADRCVYAPPPTDALRASTTTPADLADKVREG 716

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BLAST of Gvermi4438.t1 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 64.7 bits (156), Expect = 3.360e-7
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 0

Query:    5 QVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPIADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPP 87
            Q  YKR+FDARLR+   + I  G +VF+R++      E +HKL+ +A GP++V      TVV  I    ER+SRDRV LAP P
Sbjct:  627 QARYKRNFDARLRKPQYQ-IPPGSYVFLRKKQGT-ASEPKHKLAQVATGPYQVRRSDQHTVVIAIGDQEERVSRDRVELAPSP 707

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BLAST of Gvermi4438.t1 vs. uniprot
Match: R7QJ39_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ39_CHOCR)

HSP 1 Score: 60.8 bits (146), Expect = 5.210e-6
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0

Query:    5 QVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPIADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPP 87
            Q  YKR+FDARLR      I  G +VF+R+E      E +HKL+ +A G + V      TVV  I    ER+SRDRV LAP P
Sbjct:  582 QARYKRNFDARLRNPQYE-IPPGSYVFLRKEQGT-ASEPKHKLAQVATGLYHVRRSDQHTVVIAIGDQEERVSRDRVELAPSP 662

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BLAST of Gvermi4438.t1 vs. uniprot
Match: R7QSX9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSX9_CHOCR)

HSP 1 Score: 60.1 bits (144), Expect = 7.580e-6
Identity = 41/104 (39.42%), Postives = 55/104 (52.88%), Query Frame = 0

Query:    5 QVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPIADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPPSSEVVLQSGIPA-LADSETPG 107
            Q  YKRDFD R+RR NSR +  G++V++       T  K   L+  A GP+RV++     +  + DG  ER+S DR V APPP       +  P  LAD  T G
Sbjct:  418 QARYKRDFDKRIRRINSR-LRPGEYVYLNPTDGAKTSNK---LASPAVGPYRVLANDRRIITIDRDGVTERVSADRCVYAPPPIDAPRASTTTPRDLADKVTAG 517

The following BLAST results are available for this feature:

BLAST of Gvermi4438.t1 vs. uniprot

BLAST of Gvermi4438.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
R7QFB9_CHOCR	1.570e-8	48.19	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7Q5S0_CHOCR	3.230e-7	40.38	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7QG36_CHOCR	3.360e-7	45.78	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7QJ39_CHOCR	5.210e-6	45.78	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7QSX9_CHOCR	7.580e-6	39.42	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 483..539 e-value: 3.5E-9 score: 38.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..330
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..351
None	No IPR available	CDD	cd00024	CD_CSD	coord: 488..536 e-value: 1.94611E-10 score: 54.4053
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 488..536 e-value: 7.0E-7 score: 29.1
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 488..532 score: 9.245201
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 483..536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_147	contig	ScGOVlb_147:1926824..1928482 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi4438.t1	Gvermi4438.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_147 1926824..1928482 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi4438.t1 ID=Gvermi4438.t1|Name=Gvermi4438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=553bp
MQCAQVAYKRDFDARLRRENSRPISKGDHVFVRREHYNHTKEKRHKLSPI
ADGPFRVISESTGTVVAEIDGAHERLSRDRVVLAPPPSSEVVLQSGIPAL
ADSETPGLTVTSRPPTLPKPIRGLSDLPSDTHSPYQPDTLGLPSTPSSTP
RGTALISLAPSREGEETTPSTVAPVPPPSQRDNHRETRGRRTATPNVRQE
RVSTEVGIYPTPSREERPNNLEQQAWLVVPPTSAGDEPRSLPNVTYRVAT
KPHTANRGNSPQRVGQVTDGARVVASETANPSKGTVNRGTKWHPVLDSIG
PNQGKTQEIPENRCVNANEPPSSRVKSPQVSRINRPEPRGQPLPPSRRGE
VRHLEVRDEYRRVHGRHPYRDVSEFAAAVRPKPRASPGSGNARPPAHPYG
MLTNPIREVTPMHVEQPTQPAQGMSTRNRETPPKQRYEYDVRSARKAEWV
HTAQSAASRAISNPSQGDSRFGAVTTTPEGRNDYSQGYVVKRIVGHSWDQ
DGILQYRVRWYGYATEWDTLEPIEHLPRSKLVQYHSHAGTALLSTMHKAQ
VG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023780	Chromo_domain
IPR000953	Chromo/chromo_shadow_dom
IPR016197	Chromo-like_dom_sf