Gvermi5830.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5830.t1
Unique NameGvermi5830.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:267502..267793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog41875.XP_007508643.1
PFAMsFer2
Max annot lvl3041|Chlorophyta
KEGG koko:K22071
Evalue3.07e-22
EggNOG OGsCOG0633@1|root,KOG3309@2759|Eukaryota,37TZ6@33090|Viridiplantae,34MDP@3041|Chlorophyta
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryC
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5830Gvermi5830Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 267502..267793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1Gvermi5830.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 267502..267793 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1.start1Gvermi5830.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 267502..267504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1.CDS1Gvermi5830.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 267502..267587 +
Gvermi5830.t1.CDS2Gvermi5830.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 267679..267793 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1.exon1Gvermi5830.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 267502..267587 +
Gvermi5830.t1.exon2Gvermi5830.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 267679..267793 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1.intron1Gvermi5830.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1708 267588..267678 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5830.t1.stop1Gvermi5830.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 267791..267793 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5830.t1 ID=Gvermi5830.t1|Name=Gvermi5830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=67bp
LDRPSFDKLDEPCDDENDMLDLAFALSELSRLGCQVKLSKQLHGMRVTLP
PATRNMAVDGFVPQPH*
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spliced messenger RNA

>Gvermi5830.t1 ID=Gvermi5830.t1|Name=Gvermi5830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=201bp|location=Sequence derived from alignment at ScGOVlb_1708:267502..267793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGATCGGCCCTCCTTCGACAAGCTCGACGAGCCGTGCGACGACGAGAA
TGACATGCTCGACCTGGCGTTTGCGCTCTCCGAACTATCGAGACTCGGCT
GCCAGGTGAAGCTTTCGAAGCAGCTGCACGGCATGCGCGTCACCCTCCCG
CCGGCCACCAGAAACATGGCCGTAGATGGCTTTGTTCCTCAGCCGCACTA
A
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protein sequence of Gvermi5830.t1

>Gvermi5830.t1 ID=Gvermi5830.t1|Name=Gvermi5830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=67bp
LDRPSFDKLDEPCDDENDMLDLAFALSELSRLGCQVKLSKQLHGMRVTLP
PATRNMAVDGFVPQPH*
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mRNA from alignment at ScGOVlb_1708:267502..267793+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5830.t1 ID=Gvermi5830.t1|Name=Gvermi5830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=292bp|location=Sequence derived from alignment at ScGOVlb_1708:267502..267793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGATCGGCCCTCCTTCGACAAGCTCGACGAGCCGTGCGACGACGAGAA
TGACATGCTCGACCTGGCGTTTGCGCTCTCCGAACTGTACGTGCCCTCGT
TTCCcgcccgcgcccgcgccaacccccgcgcgcgcaccccgctcgtcgag
ctgacccgcgtcccgcccccgcccCAGATCGAGACTCGGCTGCCAGGTGA
AGCTTTCGAAGCAGCTGCACGGCATGCGCGTCACCCTCCCGCCGGCCACC
AGAAACATGGCCGTAGATGGCTTTGTTCCTCAGCCGCACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:267502..267793+

>Gvermi5830.t1 ID=Gvermi5830.t1|Name=Gvermi5830.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=201bp|location=Sequence derived from alignment at ScGOVlb_1708:267502..267793+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGATCGGCCCTCCTTCGACAAGCTCGACGAGCCGTGCGACGACGAGAA
TGACATGCTCGACCTGGCGTTTGCGCTCTCCGAACTATCGAGACTCGGCT
GCCAGGTGAAGCTTTCGAAGCAGCTGCACGGCATGCGCGTCACCCTCCCG
CCGGCCACCAGAAACATGGCCGTAGATGGCTTTGTTCCTCAGCCGCACTA
A
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