Gvermi5911.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5911.t1
Unique NameGvermi5911.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:770611..771570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5911Gvermi5911Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 770611..771570 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5911.t1.start1Gvermi5911.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 770611..770613 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5911.t1.CDS1Gvermi5911.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 770611..771570 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5911.t1.exon1Gvermi5911.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 770611..771570 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5911.t1.stop1Gvermi5911.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 771568..771570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5911.t1Gvermi5911.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 770611..771570 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5911.t1 ID=Gvermi5911.t1|Name=Gvermi5911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=320bp
MDAPAFAASGMFSPVKVGTSSFAPAVVSPRARAAAAPPAVTMAVDAFQKK
FQRYGKINIDYSRPKKLAAYKRAGYPVSLDYPTSPAMAGHYSISNCNVPG
ASAKILSKYDEFCAKGMMQVYKRSAVPFGTYSTKCAEGTVPQQAFDKRVV
SRTKAFRQAQKPVSVRMAERFENRRRCFIMANGCHREEQQFSAMPMSAAT
YMAARAEAMGTCYRVVTPTSIAEDYMAAGVRAQLTAKAHPTGVYRVGVCE
DGFAKGDADRLRVAALAAEFRAGQQSPRTVTAQQYESARTARKLYASACH
HEETQIFAYPAVAAAMCRD*
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spliced messenger RNA

>Gvermi5911.t1 ID=Gvermi5911.t1|Name=Gvermi5911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=960bp|location=Sequence derived from alignment at ScGOVlb_1708:770611..771570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCCCGCATTCGCCGCCAGCGGCATGTTCTCGCCCGTCAAAGT
GGGCACCTCGTCCTTCGCTCccgccgtcgtgtcgccgcgcgctcgcgcgg
ccgccgcgccgcccgccgTCACCATGGCCGTGGACGCGTTCCAGAAAAAG
TTCCAGCGCTACGGCAAGATCAACATCGACTACTCGCGCCCCAAGAAGCT
GGCCGCGTACAAGCGCGCCGGCTACCCCGTCTCGCTGGACTACCCCACCT
CGCCCGCCATGGCCGGCCACTACTCCATCTCCAACTGCAACGTGCCCGGC
GCGTCCGCCAAGATCCTCAGCAAGTACGACGAGTTCTGCGCCAAGGGCAT
GATGCAGGTGTACAAGCGCTCGGCCGTGCCGTTCGGCACGTACAGCACCA
AGTGCGCCGAGGGCACCGTGCCGCAGCAGGCGTTTGACAAGCGCGTGGTC
AGCCGCACCAAGGCGTTCCGCCAGGCGCAGAAGCCCGTCAGCGTGCGCAT
GGCCGAGCGCTTCGAGAACCGCCGCCGCTGCTTCATCATGGCCAACGGCT
GCCACCGCGAGGAGCAGCAGTTCTCCGCCATGCCCATGTCGGCCGCCACG
TACATGGCCGCGCGCGCCGAGGCCATGGGCACGTGCTACCGCGTCGTCAC
GCCCACGTCCATCGCCGAGGACTACATGGCCGCCGGCGTGCGCGCCCAGC
TCACCGCCAAGGCGCACCCCACCGGCGTGTACCGCGTGGGCGTGTGCGAG
GACGGCTTCGCCAAGGGCGACGCCGACAGGCTGCGCGTCGCCGCGCTCGC
CGCCGAGTTCCGCGCCGGCCAGCAGTCGCCGCGCACCGTCACGGCGCAGC
AGTACGAGTCGGCGCGCACCGCGCGCAAGCTGTACGCCAGCGCCTGCCAC
CACGAGGAGACGCAGATCTTTGCGTACCccgccgtcgccgccgccatgtg
ccgcgactga
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protein sequence of Gvermi5911.t1

>Gvermi5911.t1 ID=Gvermi5911.t1|Name=Gvermi5911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=320bp
MDAPAFAASGMFSPVKVGTSSFAPAVVSPRARAAAAPPAVTMAVDAFQKK
FQRYGKINIDYSRPKKLAAYKRAGYPVSLDYPTSPAMAGHYSISNCNVPG
ASAKILSKYDEFCAKGMMQVYKRSAVPFGTYSTKCAEGTVPQQAFDKRVV
SRTKAFRQAQKPVSVRMAERFENRRRCFIMANGCHREEQQFSAMPMSAAT
YMAARAEAMGTCYRVVTPTSIAEDYMAAGVRAQLTAKAHPTGVYRVGVCE
DGFAKGDADRLRVAALAAEFRAGQQSPRTVTAQQYESARTARKLYASACH
HEETQIFAYPAVAAAMCRD*
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mRNA from alignment at ScGOVlb_1708:770611..771570+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5911.t1 ID=Gvermi5911.t1|Name=Gvermi5911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=960bp|location=Sequence derived from alignment at ScGOVlb_1708:770611..771570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCCCCGCATTCGCCGCCAGCGGCATGTTCTCGCCCGTCAAAGT
GGGCACCTCGTCCTTCGCTCccgccgtcgtgtcgccgcgcgctcgcgcgg
ccgccgcgccgcccgccgTCACCATGGCCGTGGACGCGTTCCAGAAAAAG
TTCCAGCGCTACGGCAAGATCAACATCGACTACTCGCGCCCCAAGAAGCT
GGCCGCGTACAAGCGCGCCGGCTACCCCGTCTCGCTGGACTACCCCACCT
CGCCCGCCATGGCCGGCCACTACTCCATCTCCAACTGCAACGTGCCCGGC
GCGTCCGCCAAGATCCTCAGCAAGTACGACGAGTTCTGCGCCAAGGGCAT
GATGCAGGTGTACAAGCGCTCGGCCGTGCCGTTCGGCACGTACAGCACCA
AGTGCGCCGAGGGCACCGTGCCGCAGCAGGCGTTTGACAAGCGCGTGGTC
AGCCGCACCAAGGCGTTCCGCCAGGCGCAGAAGCCCGTCAGCGTGCGCAT
GGCCGAGCGCTTCGAGAACCGCCGCCGCTGCTTCATCATGGCCAACGGCT
GCCACCGCGAGGAGCAGCAGTTCTCCGCCATGCCCATGTCGGCCGCCACG
TACATGGCCGCGCGCGCCGAGGCCATGGGCACGTGCTACCGCGTCGTCAC
GCCCACGTCCATCGCCGAGGACTACATGGCCGCCGGCGTGCGCGCCCAGC
TCACCGCCAAGGCGCACCCCACCGGCGTGTACCGCGTGGGCGTGTGCGAG
GACGGCTTCGCCAAGGGCGACGCCGACAGGCTGCGCGTCGCCGCGCTCGC
CGCCGAGTTCCGCGCCGGCCAGCAGTCGCCGCGCACCGTCACGGCGCAGC
AGTACGAGTCGGCGCGCACCGCGCGCAAGCTGTACGCCAGCGCCTGCCAC
CACGAGGAGACGCAGATCTTTGCGTACCccgccgtcgccgccgccatgtg
ccgcgactga
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Coding sequence (CDS) from alignment at ScGOVlb_1708:770611..771570+

>Gvermi5911.t1 ID=Gvermi5911.t1|Name=Gvermi5911.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=960bp|location=Sequence derived from alignment at ScGOVlb_1708:770611..771570+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGCCCCCGCATTCGCCGCCAGCGGCATGTTCTCGCCCGTCAAAGT
GGGCACCTCGTCCTTCGCTCccgccgtcgtgtcgccgcgcgctcgcgcgg
ccgccgcgccgcccgccgTCACCATGGCCGTGGACGCGTTCCAGAAAAAG
TTCCAGCGCTACGGCAAGATCAACATCGACTACTCGCGCCCCAAGAAGCT
GGCCGCGTACAAGCGCGCCGGCTACCCCGTCTCGCTGGACTACCCCACCT
CGCCCGCCATGGCCGGCCACTACTCCATCTCCAACTGCAACGTGCCCGGC
GCGTCCGCCAAGATCCTCAGCAAGTACGACGAGTTCTGCGCCAAGGGCAT
GATGCAGGTGTACAAGCGCTCGGCCGTGCCGTTCGGCACGTACAGCACCA
AGTGCGCCGAGGGCACCGTGCCGCAGCAGGCGTTTGACAAGCGCGTGGTC
AGCCGCACCAAGGCGTTCCGCCAGGCGCAGAAGCCCGTCAGCGTGCGCAT
GGCCGAGCGCTTCGAGAACCGCCGCCGCTGCTTCATCATGGCCAACGGCT
GCCACCGCGAGGAGCAGCAGTTCTCCGCCATGCCCATGTCGGCCGCCACG
TACATGGCCGCGCGCGCCGAGGCCATGGGCACGTGCTACCGCGTCGTCAC
GCCCACGTCCATCGCCGAGGACTACATGGCCGCCGGCGTGCGCGCCCAGC
TCACCGCCAAGGCGCACCCCACCGGCGTGTACCGCGTGGGCGTGTGCGAG
GACGGCTTCGCCAAGGGCGACGCCGACAGGCTGCGCGTCGCCGCGCTCGC
CGCCGAGTTCCGCGCCGGCCAGCAGTCGCCGCGCACCGTCACGGCGCAGC
AGTACGAGTCGGCGCGCACCGCGCGCAAGCTGTACGCCAGCGCCTGCCAC
CACGAGGAGACGCAGATCTTTGCGTACCccgccgtcgccgccgccatgtg
ccgcgactga
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