Gvermi6160.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6160.t1
Unique Name	Gvermi6160.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	349

Homology

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BLAST of Gvermi6160.t1 vs. uniprot
Match: UPI001C8B73EB (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. TRM72054 TaxID=2870562 RepID=UPI001C8B73EB)

HSP 1 Score: 58.5 bits (140), Expect = 4.410e-6
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0

Query:  137 DRPPGW--LGPGKKCTRGHLLGKQLGGNGLNTRNIVMLFNSANSPVMSGWENMI 188
              P GW  L   +   RGHLLG+QLGGNG N RN+V ++N+ANS VM G+E+ +
Sbjct:  182 SNPAGWQHLDGQRGWARGHLLGRQLGGNGRNRRNLVKMYNAANSDVMEGYESAV 235

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BLAST of Gvermi6160.t1 vs. uniprot
Match: A0A233ST79_9ACTN (Sugar-binding protein n=2 Tax=Streptomyces diastatochromogenes TaxID=42236 RepID=A0A233ST79_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 7.020e-6
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 0

Query:  139 PPGW-LGPGKKCTRGHLLGKQLGGNGLNTRNIVMLFNSANSPVMSGWENMIAD 190
            PPG+ LG      RGHLL +QLGG+G + RN+V L+ +ANSPVMSG E  IAD
Sbjct: 2818 PPGFKLGNDPTMNRGHLLARQLGGSGTDRRNLVPLYRNANSPVMSGAEQKIAD 2870

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BLAST of Gvermi6160.t1 vs. uniprot
Match: UPI001E2A75A8 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces spinoverrucosus TaxID=284043 RepID=UPI001E2A75A8)

HSP 1 Score: 58.5 bits (140), Expect = 9.710e-6
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0

Query:  137 DRPPGW--LGPGKKCTRGHLLGKQLGGNGLNTRNIVMLFNSANSPVMSGWENMI 188
              P GW  L   +   RGHLLG+QLGGNG N RN+V ++N+ANS VM G+E+ +
Sbjct:  617 SNPAGWQHLDGQRGWARGHLLGRQLGGNGRNRRNLVKMYNAANSDVMEGYESAV 670

The following BLAST results are available for this feature:

BLAST of Gvermi6160.t1 vs. uniprot

BLAST of Gvermi6160.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
UPI001C8B73EB	4.410e-6	51.85	DNA/RNA non-specific endonuclease n=1 Tax=Streptom...	[more]
A0A233ST79_9ACTN	7.020e-6	58.49	Sugar-binding protein n=2 Tax=Streptomyces diastat...	[more]
UPI001E2A75A8	9.710e-6	51.85	DNA/RNA non-specific endonuclease n=1 Tax=Streptom...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 339..348
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..32
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 33..348
None	No IPR available	TMHMM	TMhelix		coord: 13..32
IPR044927	Type VII secretion system protein EssD-like	PFAM	PF13930	Endonuclea_NS_2	coord: 136..224 e-value: 1.0E-7 score: 32.3
IPR044929	DNA/RNA non-specific endonuclease superfamily	GENE3D	3.40.570.10	Extracellular Endonuclease, subunit A	coord: 116..275 e-value: 7.9E-12 score: 47.1

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:2796053..2797099 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6160.t1	Gvermi6160.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_1708 2796053..2797099 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6160.t1 ID=Gvermi6160.t1|Name=Gvermi6160.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=349bp
MIAGISMPRVSICLPLSFAYCAFALYAVAVIYKVKLGDIWSIGTWGEKPR
AVLQSTDALPKDEDGFERRYPVSDDDHEYNDCIARNGVNLVYGPVLNPKV
DFKEWKATWIRATFQAVGNGVAHNQLAKCGKMAYNYDRPPGWLGPGKKCT
RGHLLGKQLGGNGLNTRNIVMLFNSANSPVMSGWENMIADVRKKMLVNSS
RLAGIDYIVKCEYCSGRETPAAVWIETWFKAAKGGELVEWLKILIPNERE
VKGIIYVDNSQRLGFGQAVVNAKHNAVIRGMLARGSRGTEGAWKKYPQRL
MAFGKRSTRRKRKWQRREELTSIAVDALTEDSPCAWQVAQAEQMTNKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR044927	Endonuclea_NS_2
IPR044929	DNA/RNA_non-sp_Endonuclease_sf