Gvermi6050.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6050.t1
Unique NameGvermi6050.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length180
Homology
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A2V3J0E7_9FLOR (PXMP2/4 family protein 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0E7_9FLOR)

HSP 1 Score: 225 bits (574), Expect = 1.780e-70
Identity = 105/170 (61.76%), Postives = 129/170 (75.88%), Query Frame = 0
Query:    4 AMYLRAMSRNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHA 173
            AMY  A+ R P+ TKA  T  +A +GDLLAQ LS     +  WD RR+L+IS W L FMGP LH+W+ TLDRLF  +Y++  KLL+DQL+FAP FN+AFM+G+G LEG+S KD +  +K KLW  MKANW LWPAAQ VNFS VPK+FQV+YVNCVAL+WNVIF YISH+
Sbjct:  155 AMYAGALVRTPLRTKAITTSALAFIGDLLAQKLSQADEKEYSWDKRRSLSISLWGLVFMGPVLHYWYLTLDRLFRHKYAIFTKLLSDQLVFAPCFNAAFMLGIGALEGNSLKDIADNIKAKLWPVMKANWTLWPAAQVVNFSIVPKDFQVIYVNCVALIWNVIFTYISHS 324          
BLAST of Gvermi6050.t1 vs. uniprot
Match: R7QQZ3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQZ3_CHOCR)

HSP 1 Score: 213 bits (542), Expect = 6.170e-66
Identity = 101/174 (58.05%), Postives = 131/174 (75.29%), Query Frame = 0
Query:    1 MIVAMYLRAMSRNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHAE 174
            +++A Y+RA+  NP+ TKA  T +IA LGDLLAQ +S  G      D+RR+ ++  W L  +GPALH+W+G LDRLF  RY+V+ KLL+DQLLFAP  N+AFM+GVG+LEG+ F + S+TV+ K W + KANW LWPAAQ +NFS VPK FQ+VYVNCVALVW+VI  YI+H E
Sbjct:  140 LLLAAYVRAIKTNPVRTKALSTGLIAILGDLLAQKISQRGDGQFVLDMRRSASVGIWGLLALGPALHYWYGILDRLFLGRYAVISKLLSDQLLFAPVCNTAFMLGVGSLEGNPFSEVSKTVREKFWPSTKANWTLWPAAQLLNFSLVPKTFQIVYVNCVALVWSVILAYIAHDE 313          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A5J4YU56_PORPP (Protein SYM1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YU56_PORPP)

HSP 1 Score: 133 bits (335), Expect = 4.170e-35
Identity = 72/177 (40.68%), Postives = 105/177 (59.32%), Query Frame = 0
Query:    2 IVAMYLRAMSRNPILTKAAITCVIACLGDLLAQTLSH-----IGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHA 173
            ++A Y   +   P+LTK ++  V+  +GD+LAQ L+       G    + ++RRTL +   A   + P LH W+  L+R   S  +V+  +L DQL+FAP+ NSAFM+ +G L G       +T+K +LW  M  NW LWPAAQ +NF FVP +FQV+ VN  A VW+V+  Y +HA
Sbjct:  115 LMAWYAACVRDKPLLTKVSVALVLNMIGDILAQYLTRDSGPSSGRGSFRLNLRRTLEVGLIAAVVIAPNLHGWYLFLNRAIPSG-NVVQMVLLDQLVFAPYLNSAFMLALGALNGKKPAQIRRTIKDRLWPTMLMNWQLWPAAQALNFMFVPPDFQVLCVNLTAFVWSVLLSYSAHA 290          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A8J4UQV3_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UQV3_9MYCE)

HSP 1 Score: 125 bits (315), Expect = 3.310e-33
Identity = 68/185 (36.76%), Postives = 105/185 (56.76%), Query Frame = 0
Query:    6 YLRAMSRNPILTKAAITCVIACLGDLLAQTLS-----------HIGTADA---QWDVRRTLAISTWALCFMGPALHFWFGTLDRLF--TSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHAE 174
            YL  + + P+ TK+  T V+   GD+LAQ +            +  T D    + D +R L +++  + F GP LH+W+ +LD++   + +   + K+L DQ +FAP   S FM  + T+ G S  D  Q +K  L+ AMKANWMLWPAAQ +NFS VP N +V+Y + V++ WN+   ++ H E
Sbjct:    8 YLHLLDKYPLTTKSLSTGVLMGTGDILAQRIDFHFKQQSLNKDNNNTNDDNRFKIDYQRVLTMTSVGVLFSGPVLHYWYTSLDKIVVGSGKTVYIKKMLLDQGVFAPIVISCFMGIMNTIHGKSLADTEQKIKNDLFYAMKANWMLWPAAQLINFSLVPPNLRVLYTSVVSIFWNIFLSHLGHKE 192          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A7S1CGT8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CGT8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.890e-33
Identity = 71/176 (40.34%), Postives = 100/176 (56.82%), Query Frame = 0
Query:    6 YLRAMSRNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLF--TSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHAEPAAVA 179
            Y   +   PILTK+  + VI  +GD+  QT       D  +D+ R    S      +GP LHFW+GTL+RL    +  +VL +L  DQL++AP F + FM  + T++G  + D  + V    W + K NWMLWPAA F+NF FVP  +QV++ N VAL+WN    Y  + +PAA A
Sbjct:  112 YAELLETRPILTKSLTSLVITAIGDIACQTFF----GDGSFDIVRFAQFSILGGVLVGPGLHFWYGTLNRLIPGVTTKAVLGRLALDQLVWAPPFIAVFMGTLKTMQGRPYDDLLEIV----WESCKVNWMLWPAANFINFKFVPGQYQVLFANFVALIWNTYLSYAGN-KPAAEA 278          
BLAST of Gvermi6050.t1 vs. uniprot
Match: M1VHB0_CYAM1 (Similar to peroxisomal membrane protein PMP22 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VHB0_CYAM1)

HSP 1 Score: 127 bits (319), Expect = 1.190e-32
Identity = 73/172 (42.44%), Postives = 97/172 (56.40%), Query Frame = 0
Query:    6 YLRAMSRNPILTKAAITCVIACLGDLLAQTLS---HIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFT-SRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLE-GHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISH 172
            Y RA+ R PI TK+    ++    DL AQ      H       W  RRTL+ +   LCF+GP LH WF  L+R F  SR S++ KLL DQ L A  FN   ++ +  LE G  F+D  Q++K +L   M  NW +WPAAQ VNF+FVP  F+V+YVN V+  W +    I+H
Sbjct:  118 YCRALERRPIFTKSITAALLNFFADLTAQYFEARKHPSDTPPGWQRRRTLSFAIIGLCFVGPGLHGWFSFLERAFPPSRLSLVGKLLIDQTLGAAVFNGVLLVMLYWLEHGGKFQDAWQSMKHRLPPTMIGNWKVWPAAQLVNFAFVPPAFRVLYVNSVSFFWTIYLSEIAH 289          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A6A5BU89_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BU89_NAEFO)

HSP 1 Score: 124 bits (312), Expect = 1.330e-32
Identity = 65/194 (33.51%), Postives = 101/194 (52.06%), Query Frame = 0
Query:    6 YLRAMSRNPILTKAAITCVIACLGDLLAQTLSH------------IGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSRYSV-------------LCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISHAE 174
            YL  +   PILTK+  + ++  LGD+L QTL H              T     D  RTL ++++ +  +GP LH W+  LDR    +Y V               ++L DQ LFAPF    F+  +G +EG SF   ++ +K  +W  +  NW +WPAAQ +NF+ VP  ++V++VN VA++WN    ++ H +
Sbjct:    9 YLNMLETRPILTKSISSSILVGLGDVLTQTLEHNHQXXXXXXXXXXXTTGFTLDWVRTLKMASFGIIMIGPTLHLWYKFLDRFVAKKYPVGYVLSNTERTLNAARQMLVDQTLFAPFALFQFLAYMGAIEGKSFDSIAEKMKHDMWPTLVVNWYIWPAAQMLNFTLVPLQYRVLFVNSVAILWNAYLSHVQHKD 202          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A7K9T123_9AVES (M17L2 protein (Fragment) n=2 Tax=Galbuliformes TaxID=118184 RepID=A0A7K9T123_9AVES)

HSP 1 Score: 121 bits (304), Expect = 2.000e-31
Identity = 65/166 (39.16%), Postives = 93/166 (56.02%), Query Frame = 0
Query:   12 RNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSR-----YSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISH 172
            R  +LT      V+   GD+L QT       D +  V RT  + T   C MGP +H+W+  LD  F  R      +VL K+L DQ++ +P     + +G+GTLEGHS +++ + +K K W   KA+W +WPAAQ VNF FVP  ++VVYVN + L W+    Y+ H
Sbjct:   19 RLLLLTNTTSCGVLMATGDMLQQTWHRRQHPDTERQVARTGRMFTIG-CSMGPVMHYWYLWLDSAFPGRGVRGLRTVLKKVLIDQVVASPVLGVWYFLGMGTLEGHSLEESWEELKEKFWEFYKADWCIWPAAQLVNFLFVPPKYRVVYVNVITLGWDTYLSYLKH 183          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A1S3J5P5_LINUN (mpv17-like protein 2 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3J5P5_LINUN)

HSP 1 Score: 120 bits (300), Expect = 5.180e-31
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 0
Query:   12 RNPILTKAAITCVIACLGDLLAQTLS--HIGTADAQW--DVRRTLAISTWALCFMGPALHFWFGTLDRLF--TSRYSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISH 172
            R+  LT      V+   GD + QT     I     +W  D +RT  + T  L   GPA H W+  LDR+   T   ++  K+L DQ+  +PFF   F+MG+G LEG S++   Q  K+K WT   A+W +WPAAQ +NF F+P   +V+YVN V L W+V   YI H
Sbjct:   14 RHLFLTNTISAGVLLGAGDSIVQTFEGRRIKKKGGEWARDWKRTGRMVTIGLVLQGPASHAWYSFLDRILKGTQFKTIAKKILLDQIFASPFFAFGFLMGMGLLEGQSWEKGVQEFKSKFWTVYMADWTVWPAAQCINFYFLPPKLRVIYVNFVTLGWDVFLSYIKH 180          
BLAST of Gvermi6050.t1 vs. uniprot
Match: A0A7L2B2W7_9GRUI (M17L2 protein (Fragment) n=1 Tax=Heliornis fulica TaxID=54369 RepID=A0A7L2B2W7_9GRUI)

HSP 1 Score: 119 bits (298), Expect = 8.310e-31
Identity = 65/166 (39.16%), Postives = 91/166 (54.82%), Query Frame = 0
Query:   12 RNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRRTLAISTWALCFMGPALHFWFGTLDRLFTSR-----YSVLCKLLTDQLLFAPFFNSAFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKNFQVVYVNCVALVWNVIFMYISH 172
            R  +LT  A    +   GDLL Q        D Q  V RT  +     C MGPA+H+W+  LD  F +R      +VL K+  DQL+ +P   + + +G+GTLEG S +++ Q +K K W   K +W +WPAAQ VNF FVP  ++VVY+N V L W+    Y+ H
Sbjct:    8 RLLLLTNTATCGALLATGDLLQQAWHRRRHPDTQPQVARTGRMFAVG-CSMGPAMHYWYVWLDAAFPARGVRGLRTVLKKVFIDQLVASPVLGAWYFLGMGTLEGQSLQESWQELKEKFWEFYKVDWCVWPAAQLVNFLFVPPQYRVVYINAVTLGWDTYLSYLKH 172          
The following BLAST results are available for this feature:
BLAST of Gvermi6050.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0E7_9FLOR1.780e-7061.76PXMP2/4 family protein 2 n=1 Tax=Gracilariopsis ch... [more]
R7QQZ3_CHOCR6.170e-6658.05Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YU56_PORPP4.170e-3540.68Protein SYM1 n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A8J4UQV3_9MYCE3.310e-3336.76Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A7S1CGT8_9STRA8.890e-3340.34Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
M1VHB0_CYAM11.190e-3242.44Similar to peroxisomal membrane protein PMP22 n=1 ... [more]
A0A6A5BU89_NAEFO1.330e-3233.51Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A7K9T123_9AVES2.000e-3139.16M17L2 protein (Fragment) n=2 Tax=Galbuliformes Tax... [more]
A0A1S3J5P5_LINUN5.180e-3139.52mpv17-like protein 2 isoform X1 n=2 Tax=Lingula un... [more]
A0A7L2B2W7_9GRUI8.310e-3139.16M17L2 protein (Fragment) n=1 Tax=Heliornis fulica ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 107..166
e-value: 1.3E-24
score: 86.1
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 3..175
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 29..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 72..91
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 110..150
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 151..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 52..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 171..179
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 52..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1884075..1884614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6050.t1Gvermi6050.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1884075..1884614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6050.t1 ID=Gvermi6050.t1|Name=Gvermi6050.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=180bp
MIVAMYLRAMSRNPILTKAAITCVIACLGDLLAQTLSHIGTADAQWDVRR
TLAISTWALCFMGPALHFWFGTLDRLFTSRYSVLCKLLTDQLLFAPFFNS
AFMMGVGTLEGHSFKDNSQTVKTKLWTAMKANWMLWPAAQFVNFSFVPKN
FQVVYVNCVALVWNVIFMYISHAEPAAVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22