Gvermi6118.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6118.t1
Unique NameGvermi6118.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length213
Homology
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A2V3J0T1_9FLOR (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0T1_9FLOR)

HSP 1 Score: 325 bits (834), Expect = 3.810e-111
Identity = 159/212 (75.00%), Postives = 183/212 (86.32%), Query Frame = 0
Query:    1 MGAKCVYDVSTEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVCTTPDKKRPPIELVTLPDVTNRQYVISPPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFNEKDLVPFSKRTEALLFAKLLRS 212
            MGAKCVYD+STEG S AMV+REIIRRI+AHTGR+  SWQV+VS  T PDKKRP IE+V+LPD+ +R ++ISPPL+TEA+P L  LLRR+S Y+PK  R+ARG +FDFVDF VRVGMSFDRHG ATGVVV+IEYRPCSY  DCE LIAELMERIAAPLVPPP AN DPG+S AATT+YNY R+ VDA KFN+KDL+PFS RTEALLFAKLLR+
Sbjct:    1 MGAKCVYDISTEGKSPAMVEREIIRRIEAHTGRRLTSWQVTVSFHTNPDKKRPTIEIVSLPDIKDRVFLISPPLVTEAQPTLVPLLRRISNYSPKYNRSARGLQFDFVDFLVRVGMSFDRHGGATGVVVQIEYRPCSYTADCERLIAELMERIAAPLVPPPQANHDPGISAAATTSYNYTRVDVDATKFNDKDLMPFSHRTEALLFAKLLRA 212          
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A7S3A9S3_9RHOD (Mediator of RNA polymerase II transcription subunit 20 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A9S3_9RHOD)

HSP 1 Score: 146 bits (369), Expect = 1.580e-40
Identity = 81/211 (38.39%), Postives = 122/211 (57.82%), Query Frame = 0
Query:    1 MGAKCVYDVS-TEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVCTTPDKKRPPIELVTLPDVTNRQYVISPPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFNEKDLVPFSKRTEALLFAKLL 210
            MGAKC++ +   E  ++A V +E+ RR++AHTGR+ G WQVS     +    RPP+ + T  +   ++Y ++     E +  L+ LL ++   TP  +   +G E+D VDF+VRVGM F++ G  T  VVEI Y PCS + +C  LI ELM++IAAPLV P  +  D   + AA T Y +  +  D +K       PFS R  A+L++ +L
Sbjct:    1 MGAKCLFRIQINEYYNSAQVHKELQRRVEAHTGRRVGPWQVSAQQYGSKGNVRPPVVVFTTSEEPEKRYFLTGKHAIETDDGLSALLSKIPALTPTQSFMVKGIEYDLVDFTVRVGMVFEKSGP-TSNVVEIGYLPCSIVDNCVGLITELMDKIAAPLVAPQDSRQDSQANAAAETNYEFRLVPDDFQKVEGLANTPFSMRHTAMLYSAML 210          
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A7S1ESA9_9RHOD (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESA9_9RHOD)

HSP 1 Score: 80.9 bits (198), Expect = 7.900e-15
Identity = 61/210 (29.05%), Postives = 101/210 (48.10%), Query Frame = 0
Query:    1 MGAKCVYDVSTEGTSAAMVQREIIRRIKAHTGRQ-SGSWQVS-------VSVCTT----PDKKRPPIEL------------VTLPDVTNRQYVIS------PPLITEAEPALTVLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYN 180
            MG +CVY +S E   A  +++EI+RRI+AH+GR+ SG+ + S        +V T     P     PI              +TL +   + ++ +         +  A   +  LL R+S  + K  ++  G  +D  DF++RV +  D+   A GVV+++EY  C  + +C  L+ EL+ R+ APLV  P  N+     G+A +    N
Sbjct:    1 MGVRCVYRLSVESYDATALEKEILRRIEAHSGRRKSGTCKASFTQFAFGTTVATQSQLPPSTDNTPISSTLKTGILQGLYELTLSEAPRQIFLFALHPTARAVQLLHASSEMHALLPRISNVSEKHKKSTFGMLYDLADFTLRVCLLMDK-SKAMGVVLDVEYGACDSLAECFELLDELVSRLCAPLVAAPPLNNGTEPIGSAISNLELN 209          
BLAST of Gvermi6118.t1 vs. uniprot
Match: A0A1Y1YBK9_9FUNG (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YBK9_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 5.770e-6
Identity = 53/200 (26.50%), Postives = 89/200 (44.50%), Query Frame = 0
Query:    1 MGAKCV--YDVSTEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVC--TTPDKKRPPIELVTLPDVTNRQYVIS-----PPLITEAEPALTVLLRRVST-YTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFN 190
            MG  CV  +  +    S  M+Q  I+   K + G+ SG W +S  V   T P  K    +L+ L  V +  Y  S       +I EA+  L  ++ ++   +  +      G  FD  DF +R G +     S  G+++EIEY+PCS  T C  + +E ++ +    +PP       G   +  T Y Y  + + ++ F+
Sbjct:    1 MGVTCVLRWTDANGAQSLNMLQERIV---KVYHGKISGRWNLSCKVYRDTNPINKMGTGKLLYL--VYHSSYPSSVFSMIDGVIVEADRELDFIVNKLKNIWVTRQNLQVEGYSFDIGDFVLRAG-NIMVGSSYKGMMIEIEYKPCSIPTQCNDIFSEFLQNV----IPP-------GAKYSLETDYKYESVGLSSETFS 183          
BLAST of Gvermi6118.t1 vs. uniprot
Match: UPI001AEA813D (mediator of RNA polymerase II transcription subunit 20-like n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=UPI001AEA813D)

HSP 1 Score: 55.5 bits (132), Expect = 8.300e-6
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0
Query:   84 VLLRRVSTYTPKITRAARGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELMERIAAPLVP 159
            +LL+  + Y+ K    ++G  F+  DF V++G+     GS  G+++E+EY PCS+I+ C SL+ E M+     +VP
Sbjct:   91 LLLKLSNIYSKKSKIESKGHRFEIGDFLVKLGV-VSSAGSFKGILIEVEYIPCSFISSCWSLMVEFMQGFLGSIVP 165          
The following BLAST results are available for this feature:
BLAST of Gvermi6118.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J0T1_9FLOR3.810e-11175.00Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3A9S3_9RHOD1.580e-4038.39Mediator of RNA polymerase II transcription subuni... [more]
A0A7S1ESA9_9RHOD7.900e-1529.05Mediator of RNA polymerase II transcription subuni... [more]
A0A1Y1YBK9_9FUNG5.770e-626.50Mediator of RNA polymerase II transcription subuni... [more]
UPI001AEA813D8.300e-635.53mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013921Mediator complex, subunit Med20PFAMPF08612Med20coord: 75..155
e-value: 3.4E-9
score: 36.4
IPR013921Mediator complex, subunit Med20PANTHERPTHR12465UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49coord: 10..154
NoneNo IPR availablePANTHERPTHR12465:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 20coord: 10..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:2588792..2589525 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6118.t1Gvermi6118.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 2588792..2589525 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6118.t1 ID=Gvermi6118.t1|Name=Gvermi6118.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=213bp
MGAKCVYDVSTEGTSAAMVQREIIRRIKAHTGRQSGSWQVSVSVCTTPDK
KRPPIELVTLPDVTNRQYVISPPLITEAEPALTVLLRRVSTYTPKITRAA
RGSEFDFVDFSVRVGMSFDRHGSATGVVVEIEYRPCSYITDCESLIAELM
ERIAAPLVPPPHANSDPGVSGAATTAYNYNRIVVDAKKFNEKDLVPFSKR
TEALLFAKLLRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013921Mediator_Med20